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Image tools for UNIX

This talk features two simple and useful tools for digital image processing in the UNIX environment. They are xv and pbmplus. The xv image viewer which runs under the X window system reads images in a number of different file formats and writes them out in different formats. The view area supports a pop-up control panel. The 'algorithms' menu lets you blur an image. The xv control panel also activates the color editor which displays the image's color map (if one exists). The xv image viewer is available through the internet. The pbmplus package is a set of tools designed to perform image processing from within a UNIX shell. The acronym 'pbm' stands for portable bit map. Like xv, the pbm plus tool can convert images from and to many different file formats. The source code and manual pages for pbmplus are also available through the internet. This software is in the public domain.

Banks, David C.↗

NASA Contractor Report: Guidelines for Proof Test Analysis

These Guidelines integrate state-of-the-art Elastic-Plastic Fracture Mechanics (EPFM) and proof test implementation issues into a comprehensive proof test analysis procedure in the form of a Road Map which identifies the types of data, fracture mechanics based parameters, and calculations needed to perform flaw screening and minimum proof load analyses of fracture critical components. Worked examples are presented to illustrate the application of the Road Map to proof test analysis. The state-of-the-art fracture technology employed in these Guidelines is based on the EPFM parameter, J, and a pictorial representation of a J fracture analysis, called the Failure Assessment Diagram (FAD) approach. The recommended fracture technology is validated using finite element J results, and laboratory and hardware fracture test results on the nickel-based superalloy IN-718, the aluminum alloy 2024-T351 1, and ferritic pressure vessel steels. In all cases the laboratory specimens and hardware failed by ductile mechanisms. Advanced proof test analyses involving probability analysis and Multiple Cycle Proof Testing (MCPT) are addressed. Finally, recommendations are provided on to how to account for the effects of the proof test overload on subsequent service fatigue and fracture behaviors.

Chell, G. G.↗

Guidelines for Proof Test Analysis

These guidelines integrate state-of-the-art elastic-plastic fracture mechanics (EPFM) and proof test implementation issues into a comprehensive proof test analysis procedure in the form of a road map which identifies the types of data, fracture mechanics based parameters, and calculations needed to perform flaw screening and minimum proof load analyses of fracture critical components. Worked examples are presented to illustrate the application of the road map to proof test analysis. The state-of-the art fracture technology employed in these guidelines is based on the EPFM parameter, J, and a pictorial representation of a J fracture analysis, called the failure assessment diagram (FAD) approach. The recommended fracture technology is validated using finite element J results, and laboratory and hardware fracture test results on the nickel-based superalloy Inconel 718, the aluminum alloy 2024-T3511, and ferritic pressure vessel steels. In all cases the laboratory specimens and hardware failed by ductile mechanisms. Advanced proof test analyses involving probability analysis and multiple-cycle proof testing (MCPT) are addressed. Finally, recommendations are provided on how to account for the effects of the proof test overload on subsequent service fatigue and fracture behaviors.

Chell, G. G.↗

Multi-objective optimization of root phenotypes for nutrient capture using evolutionary algorithms

Root phenotypes are avenues to the development of crop cultivars with improved nutrient capture, which is an important goal for global agriculture. The fitness landscape of root phenotypes is highly complex and multidimensional. It is difficult to predict which combinations of traits (phene states) will create the best performing integrated phenotypes in various environments. Brute force methods to map the fitness landscape by simulating millions of phenotypes in multiple environments are computationally challenging. Evolutionary optimization algorithms may provide more efficient avenues to explore high dimensional domains such as the root phenotypic space. We coupled the three-dimensional functional–structural plant model, SimRoot, to the Borg Multi-Objective Evolutionary Algorithm (MOEA) and the evolutionary search over several generations facilitated the identification of optimal root phenotypes balancing trade-offs across nutrient uptake, biomass accumulation, and root carbon costs in environments varying in nutrient availability. Our results show that several combinations of root phenes generate optimal integrated phenotypes where performance in one objective comes at the cost of reduced performance in one or more of the remaining objectives, and such combinations differed for mobile and non-mobile nutrients and for maize (a monocot) and bean (a dicot). Functional–structural plant models can be used with multi-objective optimization to identify optimal root phenotypes under various environments, including future climate scenarios, which will be useful in developing the more resilient, efficient crops urgently needed in global agriculture.

59 BASIC BIOLOGICAL SCIENCES↗

Neuromorphic learning of continuous-valued mappings from noise-corrupted data

The effect of noise on the learning performance of the backpropagation algorithm is analyzed. A selective sampling of the training set is proposed to maximize the learning of control laws by backpropagation, when the data have been corrupted by noise. The training scheme is applied to the nonlinear control of a cart-pole system in the presence of noise. The neural computation provides the neurocontroller with good noise-filtering properties. In the presence of plant noise, the neurocontroller is found to be more stable than the teacher. A novel perspective on the application of neural network technology to control engineering is presented.

Troudet, T.↗

R and DE Robotic Sensor Intern Team: Advanced Sensor Suite Prototype

The Department of Energy (DOE) nuclear complex includes many hazardous and challenging environments that must be inspected remotely and routinely for structural integrity evaluation and long-term planning purposes. The H-Canyon Air Exhaust (HCAEX) Tunnel is an example of such an environment where a biannual inspection is currently performed. Presently inspections are performed by teleoperated robotic crawlers which provide low-res video feedback to the structural engineers. Advanced sensors: including Lidar and panospheric hi-res cameras have the potential to provide additional valuable data in future inspections. The primary goal of the sensor suite is to provide an internal 3D map of the HCAEX tunnel. Possible sensors were a stereo camera, a 3D Lidar, or a 2D Lidar that would need to be spun around. The issues with the stereo camera were that it does not have a large field-of-view and that its depth information was not nearly as accurate as even the baseline Lidars. The Hokuyo UTM-30LX-EW shown below provides a 270 deg. FOV with high accuracy and resolution while the largest FOV on a 3D Lidar is 40 deg. This was the reason a 2D Lidar was chosen over the 3D Lidar. Even though the 2D Lidar requires additional components and software to generate a 3D map, its FOV advantage is too great given that the HCAEX tunnel is a relatively confined space. Along with the Lidar, a camera sensor, IMU sensor, pan-tit unit, and on board computer needed to be identified. The two panospheric cameras allow for full 360 deg. FOV. The IMU will give data on the state of the robot inside the tunnel. The computer is used to gather and process data on board and to control the pan-tilt system. Mounts were designed and 3D printed to build the prototype of the sensor suite. It was designed to have the Lidar on top With its full FOV free while having the camera below and as close to together as possible while still leaving much of their FOV visible. The design also managed the cables such that they were unlikely to be damaged if in tension and so that they did not intrude much on the cameras vision. The sensor tree developed for the H-Canyon tunnel inspection project produces a large quantity of camera and Lidar data. a postprocessing pipeline was created to facilitate the analysis of these data. The pipeline follows the following routine: 1) Registration - Salient local features in subsequent scans are identified and used to align the scans With one another. This allows production of a single cohesive map of the tunnel. 2) Sensor Fusion - RGB camera data is 'painted' onto the depth data created by the Lidar. 3) Segmentation - Individual surfaces from within the scene are segmented out separately for individual analysis. 4) Degradation Analysis - Automatic mapping of local deviation from the plane in position or surface normal is performed, as is detection of exposed rebar using Lidar return intensity. 2) Obstacle Detection - Lidar data is also used in real time to detect obstacles in the environment. This could give feedback to the operator to successfully drive in the tunnel. 6) Graphic User Interface - a custom GUI was created to facilitate customer use of the system. The system provides real-time feedback from both the cameras and Lidar. The Lidar point-cloud data is also used for obstacle detection. As the Lidar spins, various algorithms are run to analyze the current 'slice' and obstacles in the environment are determined and registered on a cost-map. A Graphical User Interface (GUI) was developed to allow the user to easily command the crawler to set the rotational speed of the Lidar, perform a scan, and register and save the 3D generated cloud after a scan is done. For the good of the crawler, a critical aspect of the GUI design is to allow the user to cancel a scan any time after it is commanded and before it is saved. The sensor trees depth accuracy was evaluated in comparison to a high end commercial FARO Terrestrial Laser Scanner (TLS) with specifications for millimeter accuracy at distances above 10 m. For the purposes of these tests, the depth measurements produced by the TLS were taken as ground truth. Example test wall panels were scanned with the TLS and postprocessed with its proprietary software, and subsequently scanned with the sensor tree system. The two scans were manually aligned and for each point in the output cloud from the sensor tree, the distance to the nearest ground truth point in the FARO cloud was determined. 98.7% of all produced points were within the specified target range of 6 mm, with an average deviation of 1.75 mm. The test walls used have an overall in-wall depth variation of around 40 mm.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Computational Modeling of Hydraulic Properties of a Sheared Single Rock Fracture

Flow through a single mechanically sheared Marcellus shale fracture was investigated computationally and experimentally. To provide a better understanding of the variation of hydraulic and geometrical characteristics of a fracture subjected to shearing, coupled shear flow tests on the fracture for four shearing displacement steps under constant normal stress were performed. At the end of each shearing step, computed tomography (CT) scans with resolution 26.8 μm were obtained and the corresponding fracture geometries were evaluated. The CT images were used to generate full aperture maps of the fracture configuration. In addition, average aperture maps were also created by averaging the full-resolution data over 10 × 10 pixels, smoothing out fine structural details. Computational modeling of water flow through the fractures at different shearing steps was performed using a modified local cubic law approach and the 3D full Navier–Stokes equations with the use of the ANSYS-Fluent software. Both the average aperture maps and full maps were used in these simulations. The experimental pressure drops of the fracture at shearing step 1, which has very small apertures, poorly matched the numerical results, quite likely because the fracture structure was inadequately captured by the scanning resolution. Shearing typically increased the aperture height of the fracture, whose features were then better captured by the CT scan. Good agreement between the experimental data and the numerical results of the full map for shearing step 2 was observed. The simulations were performed for both full and average aperture maps, and the effects of scan resolution and surface roughness on the accuracy of the results were studied. The modified local cubic law and full Navier–Stokes simulations of the averaged map fracture were found to be in good agreement. It was conjectured that this was because the nonlinear losses were insignificant for the smoothed out averaged map fracture. Similar comparisons with those of the full map showed agreement in trends, but there were some quantitative differences. The averaged fracture map simulations also predicted lower pressure drops compared to the full map, particularly for high flow rates. These differences were due to the fine-scale geometrical complexity (surface roughness) of fracture geometry that affects the fluid flow in the fracture. In conclusion, an improved cubic law model was also proposed, and its accuracy was verified by comparing its predictions with those of the Navier–Stokes simulations.

58 GEOSCIENCES↗

McIDAS-eXplorer: A version of McIDAS for planetary applications

McIDAS-eXplorer is a set of software tools developed for analysis of planetary data published by the Planetary Data System on CD-ROM's. It is built upon McIDAS-X, an environment which has been in use nearly two decades now for earth weather satellite data applications in research and routine operations. The environment allows convenient access, navigation, analysis, display, and animation of planetary data by utilizing the full calibration data accompanying the planetary data. Support currently exists for Voyager images of the giant planets and their satellites; Magellan radar images (F-MIDR and C-MIDR's, global map products (GxDR's), and altimetry data (ARCDR's)); Galileo SSI images of the earth, moon, and Venus; Viking Mars images and MDIM's as well as most earth based telescopic images of solar system objects (FITS). The NAIF/JPL SPICE kernels are used for image navigation when available. For data without the SPICE kernels (such as the bulk of the Voyager Jupiter and Saturn imagery and Pioneer Orbiter images of Venus), tools based on NAIF toolkit allow the user to navigate the images interactively. Multiple navigation types can be attached to a given image (e.g., for ring navigation and planet navigation in the same image). Tools are available to perform common image processing tasks such as digital filtering, cartographic mapping, map overlays, and data extraction. It is also possible to have different planetary radii for an object such as Venus which requires a different radius for the surface and for the cloud level. A graphical user interface based on Tel-Tk scripting language is provided (UNIX only at present) for using the environment and also to provide on-line help. It is possible for end users to add applications of their own to the environment at any time.

Limaye, Sanjay S.↗

R and DE Robotic Sensor Intern Team: Sensor Suite Software and User Interface

The sensor tree developed for the H-Canyon tunnel inspection project produces a large quantity of camera and Lidar data. A postprocessing pipeline was created to facilitate the analysis of these data. The pipeline follows the following routine: 1) Registration - Salient local features in subsequent scans are identified and used to align the scans with one another. This allows production of a single cohesive map of the tunnel. 2) Sensor Fusion - RGB camera data is 'painted' onto the depth data created by the Lidar. 3) Segmentation - Individual surfaces from within the scene are segmented out separately for individual analysis. 4) Degradation Analysis - Automatic mapping of local deviation from the plane in position or surface normal is performed, as is detection of exposed rebar using Lidar return intensity. 5) Obstacle Detection - Lidar data is also used in real time to detect obstacles in the environment. This could give feedback to the operator to successfully drive in the tunnel. 6) Graphic User Interface - a custom GUI was created to facilitate customer use of the system. The system provides real-time feedback from both the cameras and Lidar. During alignment, local features are used to recognize points within the walls that are especially unique and noticeable (salient) based on their deviation from the expected surface of the wall. These are used as landmarks to register the clouds, which also informs precise localization of the base at each scan point. After registration, clouds are 'painted' with RGB data from the spherical cameras, as shown below. The painted clouds provide a 3D, colorized model of the environment which improves the realism of the experience for the user. Painting also labels high-resolution color imagery from the 3D cameras with depth values. Following sensor fusion, individual walls and cylindrical duct surfaces are segmented from the scene for individual analysis using a Random Sample Consensus algorithm. This algorithm allows segmentation of planar walls and cylindrical ducts. Once individual walls are identified, each point within the wall can be compared to its neighbors and the wall overall in order to detect local areas with damaged concrete. Automatic rebar detection is also performed using the contrast in Lidar return intensity between iron and concrete. The Lidar point-cloud data is also used for obstacle detection. As the Lidar spins, various algorithms are run to analyze the current 'slice' and obstacles in the environment are determined and registered on a cost-map. A Graphical User Interface (GUI) was developed to allow the user to easily command the crawler to set the rotational speed of the Lidar, perform a scan, and register and save the 3D generated cloud after a scan is done. For the good of the crawler, a critical aspect of the GUI design is to allow the user to cancel a scan any time after it is commanded and before it is saved.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Execution models for mapping programs onto distributed memory parallel computers

The problem of exploiting the parallelism available in a program to efficiently employ the resources of the target machine is addressed. The problem is discussed in the context of building a mapping compiler for a distributed memory parallel machine. The paper describes using execution models to drive the process of mapping a program in the most efficient way onto a particular machine. Through analysis of the execution models for several mapping techniques for one class of programs, we show that the selection of the best technique for a particular program instance can make a significant difference in performance. On the other hand, the results of benchmarks from an implementation of a mapping compiler show that our execution models are accurate enough to select the best mapping technique for a given program.

Sussman, Alan↗

Photogrammetry of the Viking Lander imagery

The problem of photogrammetric mapping which uses Viking Lander photography as its basis is solved in two ways: (1) by converting the azimuth and elevation scanning imagery to the equivalent of a frame picture, using computerized rectification; and (2) by interfacing a high-speed, general-purpose computer to the analytical plotter employed, so that all correction computations can be performed in real time during the model-orientation and map-compilation process. Both the efficiency of the Viking Lander cameras and the validity of the rectification method have been established by a series of pre-mission tests which compared the accuracy of terrestrial maps compiled by this method with maps made from aerial photographs. In addition, 1:10-scale topographic maps of Viking Lander sites 1 and 2 having a contour interval of 1.0 cm have been made to test the rectification method.

Wu, S. S. C.↗

Satellite-Based Assessment of Grassland Conversion and Related Fire Disturbance in the Kenai Peninsula, Alaska

Spruce beetle-induced (Dendroctonus rufipennis (Kirby)) mortality on the Kenai Peninsula has been hypothesized by local ecologists to result in the conversion of forest to grassland and subsequent increased fire danger. This hypothesis stands in contrast to empirical studies in the continental US which suggested that beetle mortality has only a negligible effect on fire danger. In response, we conducted a study using Landsat data and modeling techniques to map land cover change in the Kenai Peninsula and to integrate change maps with other geospatial data to predictively map fire danger for the same region. We collected Landsat imagery to map land cover change at roughly five-year intervals following a severe, mid-1990s beetle infestation to the present. Landcover classification was performed at each time step and used to quantify grassland encroachment patterns over time. The maps of land cover change along with digital elevation models (DEMs),temperature, and historical fire data were used to map and assess wildfire danger across the study area. Results indicate the highest wildfire danger tended to occur in herbaceous and black spruce land cover types, suggesting that the relationship between spruce beetle damage and wildfire danger in costal Alaskan forested ecosystems differs from the relationship between the two in the forests of the coterminous United States. These change detection analyses and fire danger predictions provide the Kenai National Wildlife Refuge (KENWR) ecologists and other forest managers a better understanding of the extent and magnitude of grassland conversion and subsequent change in fire danger following the 1990s spruce beetle outbreak.

wildfire↗

Maps or analogies? A comparison of instructional aids for menu navigation

The relative efficacy of a variety of spatial maps and analogies as instructional aids for the learning and navigation of hierachical data bases is studied. Subjects performed single- and multinode retrieval tasks with novel data bases. The results of one experiment indicated that subjects who studied an analogy prior to performing data-retrieval tasks were less affected by increasing search distance than were subjects who studied a spatial map. The second experiment suggested that the benefits of analogy relative to other instructional aids increased as time passed between initial instruction and interaction with the data base.

Webb, Jayson M.↗

Molecular Transducers of Physical Activity Consortium (MoTrPAC): Mapping the Dynamic Responses to Exercise

Exercise provides a robust physiological stimulus that evokes cross-talk between a wide range of tissues via hormonal, cellular and molecular signals that when repeated regularly over time (i.e., training) improves physiological capacity, benefits numerous organ systems and decreases the risk for premature mortality. In spite of its fundamental importance, a gap remains in identifying the detailed molecular signals and responses to exercise and its benefits for health and disease prevention. To further knowledge in this emerging area, the Molecular Transducers of Physical Activity Consortium (MoTrPAC) was established to generate a molecular map of the effects of acute and chronic exercise. MoTrPAC investigators are conducting preclinical and clinical studies to better understand the systemic effects of exercise across multiple tissues. The preclinical studies were performed on more than 700 rats with the analysis of twenty or more organs per rat. The clinical study involves a large cohort of ~2600 individuals with a range of ages and fitness levels (untrained, trained, highly trained) who will be evaluated physiologically and by molecular probing of blood, muscle and adipose tissues before and after acute and chronic endurance or resistance exercise. Multi-omic analyses (genomics, epigenomics, transcriptomics, proteomics and metabolomics/lipidomics) will be performed followed by state-of-the-art bioinformatics to create a molecular map of exercise. This mapping project will provide a public database that is expected to enhance our understanding of the health benefits of physical activity in many organ systems and potentially provide insight into mitigating diseases through activity.

Sanford, James A.↗

Engineering study for pallet adapting the Apollo laser altimeter and photographic camera system for the Lidar Test Experiment on orbital flight tests 2 and 4

A Laser Altimeter and Mapping Camera System was included in the Apollo Lunar Orbital Experiment Missions. The backup system, never used in the Apollo Program, is available for use in the Lidar Test Experiments on the STS Orbital Flight Tests 2 and 4. Studies were performed to assess the problem associated with installation and operation of the Mapping Camera System in the STS. They were conducted on the photographic capabilities of the Mapping Camera System, its mechanical and electrical interface with the STS, documentation, operation and survivability in the expected environments, ground support equipment, test and field support.

Kuebert, E. J.↗

Mapping canopy defoliation by herbivorous insects at the individual tree level using bi-temporal airborne imaging spectroscopy and LiDAR measurements

Defoliation by herbivorous insects is a widespread forest disturbance driver, affecting global forest health and ecosystem dynamics. Additionally, compared with time- and labor-intensive field surveys, remote sensing provides the only realistic approach to mapping canopy defoliation by herbivorous insects over large spatial and temporal scales. However, the spectral and structural signatures of defoliation by insects at the individual tree level have not been well studied. Additionally, the predictive power of spectral and structural metrics for mapping canopy defoliation has seldom been compared. These critical knowledge gaps prevent us from consistently detecting and mapping canopy defoliation by herbivorous insects across multiple scales. During the peak of a gypsy moth outbreak in Long Island, New York in summer 2016, we leveraged bi-temporal airborne imaging spectroscopy (IS, i.e., hyperspectral imaging) and LiDAR measurements at 1m spatial resolution to explore the spectral and structural signatures of canopy defoliation in a mixed oak-pine forest. We determined that red edge and near-infrared spectral regions within the IS data were most sensitive to crown-scale defoliation severity. LiDAR measurements including B70 (i.e., 70th bincentile height), intensity skewness, and kurtosis were effectively able to detect structural changes caused by herbivorous insects. In addition to canopy leaf loss, increased exposure of understory and non-photosynthetic materials contributed to the detected spectral and structural signatures. Comparing the ability of individual sensors to map canopy defoliation, the LiDAR-only Ordinary Least-Square (OLS) model performed better than the IS-only model (Adj. R-squared = 0.77, RMSE = 15.37% vs. Adj. R- squared = 0.63, RMSE = 19.11%). The IS+LiDAR model improved on performance of the individual sensors (Adj. R-squared = 0.81, RMSE = 14.46%). Our study improves our understanding of spectral and structural signatures of defoliation by herbivorous insects and presents a novel approach for mapping insect defoliation at the individual tree level. Furthermore, with the current and next generation of spaceborne sensors (e.g., WorldView-3, Landsat, Sentinel-2, HyspIRI, and GEDI), higher accuracy and frequent monitoring of insect defoliation may become more feasible across a range of spatial scales, which are critical for ecological research and management of forest resources including the economic consequences of forest insect infestations (e.g., reduced growth and increased mortality), as well as for informing and testing of carbon cycle models.

54 ENVIRONMENTAL SCIENCES↗

Spatially Resolved Measurements of Ablation Velocities from Laser-Irradiated Solid Cobalt Targets Using X-ray Doppler Velocimetry

We present proof-of-principle experimental results using a novel diagnostic designed to measure bulk fluid motion in materials. The diagnostic is based on quasi-monochromatic bent-crystal imaging in two narrow, closely-spaced wavelength bands within the spectral profile of the Co He-α line generated by laser irradiation of a solid Co target. Analysis of the two-dimensional (2D) maps obtained from the two crystals, coupled with spectroscopic measurements of the line width, allow a 2D ablation velocity map to be inferred. We describe the technique, the instrumentation, and the experiments we performed at the Z-Beamlet Laser Facility at Sandia National Laboratory, and we present the results and the analysis procedures we used to reconstruct a 2D velocity map. We also discuss possible extensions and improvements to the technique for future experimental applications.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

High repetition rate mapping of the interaction between a laser plasma and magnetized background plasma via laser induced fluorescence

In this work, the laminar coupling of energy between a laser-produced plasma and a background magnetized plasma was investigated via planar laser induced fluorescence diagnostic and magnetic flux probes. Experiments performed on the Large Plasma Device at the University of California, Los Angeles, mapped out the two-dimensional spatiotemporal evolution of the laser-plasma (debris) ion velocity distribution function (VDF) to assess debris-background coupling in a sub-Alfvénic regime. The acquisition of these data necessitates high repetition rate (1 Hz) as each dataset is the accumulation of thousands of laser shots, which would not be feasible in single-shot experiments. Fully kinetic, three-dimensional particle-in-cell simulations are compared to the measured VDFs to provide a framework in which we can understand the coupling of a sub-Alfvénic plasma flow through a preformed, magnetized plasma. The simulations display the same departure from the expected gyromotion of the debris plasma as observed in the experimental data, and in conjunction with the measured magnetic field traces, have led to the direct observation of the collisionless coupling via laminar fields.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗