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At least 1,135 records · Page 63

Predictive and therapeutic markers in ovarian cancer

Cancer markers may be developed to detect diseases characterized by increased expression of apoptosis-suppressing genes, such as aggressive cancers. Genes in the human chromosomal regions, 8q24, 11q13, 20q11-q13, were found to be amplified indicating in vivo drug resistance in diseases such as ovarian cancer. Diagnosis and assessment of amplification levels certain genes shown to be amplified, including PVT1, can be useful in prediction of poor outcome of patient's response and drug resistance in ovarian cancer patients with low survival rates. Certain genes were found to be high priority therapeutic targets by the identification of recurrent aberrations involving genome sequence, copy number and/or gene expression are associated with reduced survival duration in certain diseases and cancers, specifically ovarian cancer. Therapeutics to inhibit amplification and inhibitors of one of these genes, PVT1, target drug resistance in ovarian cancer patients with low survival rates is described.

60 APPLIED LIFE SCIENCES↗

Fluidics platform and method for sample preparation and analysis

Herein provided are fluidics platform and method for sample preparation and analysis. The fluidics platform is capable of analyzing DNA from blood samples using amplification assays such as polymerase-chain-reaction assays and loop-mediated-isothermal-amplification assays. The fluidics platform can also be used for other types of assays and analyzes. In some embodiments, a sample in a sealed tube can be inserted directly. The following isolation, detection, and analyzes can be performed without a user's intervention. The disclosed platform may also comprises a sample preparation system with a magnetic actuator, a heater, and an air-drying mechanism, and fluid manipulation processes for extraction, washing, elution, assay assembly, assay detection, and cleaning after reactions and between samples.

47 OTHER INSTRUMENTATION↗

Nucleic acid detection system and method for detecting influenza

The invention provides a rapid, sensitive and specific nucleic acid detection system which utilizes isothermal nucleic acid amplification in combination with a lateral flow chromatographic device, or DNA dipstick, for DNA-hybridization detection. The system of the invention requires no complex instrumentation or electronic hardware, and provides a low cost nucleic acid detection system suitable for highly sensitive pathogen detection. Hybridization to single-stranded DNA amplification products using the system of the invention provides a sensitive and specific means by which assays can be multiplexed for the detection of multiple target sequences.

59 BASIC BIOLOGICAL SCIENCES↗

Highly simplified lateral flow-based nucleic acid sample preparation and passive fluid flow control

Highly simplified lateral flow chromatographic nucleic acid sample preparation methods, devices, and integrated systems are provided for the efficient concentration of trace samples and the removal of nucleic acid amplification inhibitors. Methods for capturing and reducing inhibitors of nucleic acid amplification reactions, such as humic acid, using polyvinylpyrrolidone treated elements of the lateral flow device are also provided. Further provided are passive fluid control methods and systems for use in lateral flow assays.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Method for genetic identification of unknown organisms

A method of rapid, genome and proteome based identification of unknown pathogenic or non-pathogenic organisms in a complex sample. The entire sample is analyzed by creating millions of emulsion encapsulated microdroplets, each containing a single pathogenic or non-pathogenic organism sized particle and appropriate reagents for amplification. Following amplification, the amplified product is analyzed.

59 BASIC BIOLOGICAL SCIENCES↗

On the utility of non thermal plasmas

Nonthermal plasmas have properties which can differ substantially even from thermal plasmas of the same density and energy. In practical applications, many of these differences have utility that can be exploited, often with waves. The goal of this thesis is to explore three such applications of nonthermal plasma for the purposes of wave amplification and, ultimately, controlled nuclear fusion. First, we discuss the outstanding potential for a shaped plasma technology that relies on ionizing a beam of aerosol particles. This ionization results in a Coulomb explosion, yielding a highly nonthermal distribution for the plasma in the target volume. Homogeneous, high aspect ratio plasma couplers such as these could be used in a Raman amplification scheme to attain the next generation of laser intensities. Such a powerful laser could be used to study radiation reaction and vacuum pair production, among many other applications. We describe the conditions under which sufficiently dense aerosol beams can be prepared and provide some experimental validation of these claims. Second, we survey the prospects for controlled p-11B fusion in both magnetic and inertial confinement schemes. Whereas most studies have focused on mitigating the bremsstrahlung loss channel, we focus on nonthermal manipulations of the bulk plasma which could improve the reactivity. In particular, we present upper bounds on the p-11B reactivity using alpha channeling to efficiently heat the proton distribution in both schemes. Finally, we place a sharp limit on the energy that can be extracted from a non-thermal particle distribution using waves. In the quasilinear regime of wave-particle interaction, waves rearrange the densities of states in phase space in a diffusive fashion. A salient consequence is that only certain, generally nonthermal, plasma states can be reached. We characterize this restricted state space and thereby reduce the problem of maximizing energy extraction to linear programming. Varying the connectedness of the phase space so that e.g. particles may only be diffused to parts of phase space close in energy, we describe the implications for the state space and the solution of the optimization problem.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Highly simplified lateral flow-based nucleic acid sample preparation and passive fluid flow control

Highly simplified lateral flow chromatographic nucleic acid sample preparation methods, devices, and integrated systems are provided for the efficient concentration of trace samples and the removal of nucleic acid amplification inhibitors. Methods for capturing and reducing inhibitors of nucleic acid amplification reactions, such as humic acid, using polyvinylpyrrolidone treated elements of the lateral flow device are also provided. Further provided are passive fluid control methods and systems for use in lateral flow assays.

59 BASIC BIOLOGICAL SCIENCES↗

Endpoint detection of amplified nucleic acids

The present invention relates to probes and primers beneficial for conducting amplification assays, such as those including loop-mediated isothermal amplification reactions. Also described herein are methods for detecting targets using such probes and/or primers.

59 BASIC BIOLOGICAL SCIENCES↗

Endpoint detection of amplified nucleic acids

The present invention relates to probes and primers beneficial for conducting amplification assays, such as those including loop-mediated isothermal amplification reactions. Also described herein are methods for detecting targets using such probes and/or primers.

Meagher, Robert↗

Higher-order dispersion compensating pulse shaper via amplitude spectral filtering and nonlinear phase accumulation

A method of pulse shaping using spectral filtering, positive chirp, and self-phase modulation to control the accumulated higher-order phase terms of the spectral phase. This pulse shaping method has particular advantage in fiber chirped pulse amplification (FCPA) systems, where there are two effects: (1) an offsetting of the fourth order phase via nonlinear phase accumulation, allowing for a higher Strehl ratio (i.e., a cleaner pulse), higher peak power pulse and (2) enabling power scaling to higher pulse energies without the increased nonlinear phase accumulation leading to pulse breakup. This technique can be used both in a passive system with no amplification to clean up an existing pulse, and in an amplifier system to enable higher performance operation (shorter pulses, cleaner pulses, higher energy pulses).

Domingue, Scott R.↗

Nonlinear Loss Engineering in Near‐Zero‐Index Bulk Materials

Transparent conducting oxides (TCOs) show unprecedented optical nonlinearities in the near infrared wavelength range, where the real part of their linear refractive index approaches zero. More specifically, the Kerr nonlinearities of these materials have sparked widespread attention due to their magnitude and speed. However, due to the absorptive nature of these nonlinear processes, it is of fundamental interest to further investigate the imaginary component of the nonlinear index. The present work studies the nonlinear optical absorption properties of aluminium‐doped zinc oxide (AZO) thin films in their near‐zero‐index (NZI) spectral window. It is found that the imaginary part of the refractive index is reduced under optical excitation such that the field penetration depth more than doubles. An optically induced shift of the NZI bandwidth of ≈120 nm for a pump intensity of 1.3 TW cm −2 is also demonstrated. Looking into the optically induced spectral redistribution of the probe signal, local net gain is recorded, which is ascribed to a nonlinear adiabatic energy transfer. The present study adds key information about the fundamental interplay between real and imaginary nonlinear indices in NZI media, while advancing parametric amplification as viable direction for loss compensation.

36 MATERIALS SCIENCE↗

Design and Simulation for Pre-amplifier of ITER Radial X-ray Camera

The radial X-ray camera, which is used to measure magnetohydrodynamic phenomenon and monitor edge localised mode events, is a key diagnostic system for physics studies in the international thermonuclear experimental reactor (ITER) tokamak. Considering the special requirements of physics measurements and spatial resolution, 144 detector channels are required. The board card of the pre-amplifier is designed to improve the integration, on which 16 signal channels have been integrated. In order to suppress the noise and improve the stability of the pre-amplifier, the target impedance analysis method is applied in the design of the power supply, the trans-impedance amplifier and a two-stage active low pass filter are applied in the design. Simulation with Cadence OrCAD and ANSYS SIwave has been adopted to optimize the characteristics of the pre-amplifier. A test of the pre-amplifier shows its good performance for ITER application. After optimization of the pre-amplifier, the band width is 270 kHz, the amplification is 10{sup 7} V/A, and the noise attenuation is − 30 dB, the noise of the pre-amplifier is reduced to 10 mV (noise of the power supply is included).

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

A hybrid DCF/FBG scheme for dispersion compensation over a 300 km SMF

In this work, the efficient restoration of a dissipated signal over a 300 km long-haul optical fiber is investigated. A hybrid system is proposed including a dispersion compensation fiber (DCF) and a fiber Bragg grating (FBG). Two 150 km standard single mode fibers with a chromatic dispersion of 17 ps/nm km are used in the simulation. Sufficient optical amplification power is supplied using an erbium-doped fiber amplifier to overcome the signal attenuation down the link, yet the signal is totally distorted. The only major reason left interpreting the total data loss would be the chromatic dispersion (CD). A DCF and a-tanh-apodized-linearly-chirped fiber Bragg grating (ACFBG) are implemented individually in a symmetric or a distributed setting in an attempt to compensate for the CD that led mainly to the signal degradation. The proposed hybrid scheme is then tested in a pre, post, symmetric and distributed installations. Several lengths of DCFs and ACFBGs at various parameters are examined. A comparison between the mentioned schemes is performed, seeking the most remarkable, resilient, and cost-effective technique.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Virology: The Next Generation from Digital PCR to Single Virion Genomics

In the past 25 years, virology has had major technology breakthroughs stemming first from the introduction of nucleic acid amplification testing, but more recently from the use of next-generation sequencing, digital PCR, and the possibility of single virion genomics. These technologies have and will improve diagnosis and disease state monitoring in clinical settings, aid in environmental monitoring, and reveal the vast genetic potential of viruses. Using the principle of limiting dilution, digital PCR amplifies single molecules of DNA in highly partitioned endpoint reactions and reads each of those reactions as either positive or negative based on the presence or absence of target fluorophore. In this review, digital PCR will be highlighted along with current studies, advantages/disadvantages, and future perspectives with regard to digital PCR, viral load testing, and the possibility of single virion genomics.

59 BASIC BIOLOGICAL SCIENCES↗

Weak values and weak coupling maximizing the output of weak measurements

In a weak measurement, the average output 〈o〉 of a probe that measures an observable A{sup -hat} of a quantum system undergoing both a preparation in a state ρ{sub i} and a postselection in a state E{sub f} is, to a good approximation, a function of the weak value A{sub w}=Tr[E{sub f}A{sup -hat} ρ{sub i}]/Tr[E{sub f}ρ{sub i}], a complex number. For a fixed coupling λ, when the overlap Tr[E{sub f}ρ{sub i}] is very small, A{sub w} diverges, but 〈o〉 stays finite, often tending to zero for symmetry reasons. This paper answers the questions: what is the weak value that maximizes the output for a fixed coupling? What is the coupling that maximizes the output for a fixed weak value? We derive equations for the optimal values of A{sub w} and λ, and provide the solutions. The results are independent of the dimensionality of the system, and they apply to a probe having a Hilbert space of arbitrary dimension. Using the Schrödinger–Robertson uncertainty relation, we demonstrate that, in an important case, the amplification 〈o〉 cannot exceed the initial uncertainty σ{sub o} in the observable o{sup -hat}, we provide an upper limit for the more general case, and a strategy to obtain 〈o〉≫σ{sub o}. - Highlights: •We have provided a general framework to find the extremal values of a weak measurement. •We have derived the location of the extremal values in terms of preparation and postselection. •We have devised a maximization strategy going beyond the limit of the Schrödinger–Robertson relation.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Quantum dynamics of a small symmetry breaking measurement device

Highlights: • Ferromagnetic measurement device exploits symmetry breaking to measure a spin. • Quantum interaction results in loss of phase coherence of test object. • Dynamics lead to sizeable correlation with, and enhancement of, microscopic object. • No reliable registration of pointer readings is observed after decoupling spin. - Abstract: A quantum measuring instrument is constructed that utilises symmetry breaking to enhance a microscopic signal. The entire quantum system consists of a system–apparatus–environment triad that is composed of a small set of spin-1/2 particles. The apparatus is a ferromagnet that measures the z-component of a single spin. A full quantum many-body calculation allows for a careful examination of the loss of phase coherence, the formation and amplification of system–apparatus correlations, the irreversibility of registration, the fault tolerance, and the bias of the device.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

microRNA-218 inhibits prostate cancer cell growth and promotes apoptosis by repressing TPD52 expression

Highlights: • miR-218 expression is downregulated in prostate cancer. • miR-218 inhibits prostate tumor cells proliferation partially through promoting apoptosis. • miR-218 targets TPD52 by binding to its 3′-UTR. • miR-218 suppresses prostate cancer cell growth through inhibiting TPD52 expression. - Abstract: The tumor protein D52 (TPD52) is an oncogene overexpressed in prostate cancer (PC) due to gene amplification. Although the oncogenic effect of TPD52 is well recognized, how its expression is regulated is still not clear. This study tried to explore the regulative role of miR-218, a tumor suppressing miRNA on TPD52 expression and prostate cancer cell proliferation. We found the expression of miR-218 was significantly lower in PC specimens. Based on gain and loss of function analysis, we found miR-218 significantly inhibit cancer cell proliferation by inducing apoptosis. These results strongly suggest that miR-218 plays a tumor suppressor role in PC cells. In addition, our data firstly demonstrated that miR-218 directly regulates oncogenic TPD52 in PC3 cells and the miR-218-TPD52 axis can regulate growth of this prostate cancer cell line. Knockdown of TPD52 resulted in significantly increased cancer cell apoptosis. Clearly understanding of oncogenic TPD52 pathways regulated by miR-218 might be helpful to reveal new therapeutic targets for PC.

60 APPLIED LIFE SCIENCES↗

FGFR antagonist induces protective autophagy in FGFR1-amplified breast cancer cell

Breast cancer, representing approximately 30% of all gynecological cancer cases diagnosed yearly, is a leading cause of cancer-related mortality for women. Amplification of FGFR1 is frequently observed in breast cancers and is associated with poor prognosis. Though FGFRs have long been considered as anti-cancer drug targets, and a cluster of FGFR antagonists are currently under clinical trials, the precise cellular responses under the treatment of FGFR antagonists remains unclear. Here, we show that PD166866, an FGFR1-selective inhibitor, inhibits proliferation and triggers anoikis in FGFR1-amplified breast cancer cell lines. Notably, we demonstrate that PD166866 induces autophagy in FGFR1-amplified breast cancer cell lines, while blockage of autophagy by Atg5 knockdown further enhances the anti-proliferative activities of PD166866. Moreover, mechanistic study reveals that PD166866 induces autophagy through repressing Akt/mTOR signaling pathway. Together, the present study provides new insights into the molecular mechanisms underlying the anti-tumor activities of FGFR antagonists, and may further assist the FGFRs-based drug discovery. -- Highlights: •FGFR1 antagonist inhibits cell viability in FGFR1-amplified breast cancer cells. •FGFR1 antagonist induces autophagy in FGFR1-amplified breast cancer cells. •FGFR1 antagonist-induced autophagy is protective. •FGFR1 antagonist induces autophagy by inhibiting Akt/mTOR pathway.

60 APPLIED LIFE SCIENCES↗