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At least 1,117 records · Page 62

Informing selection of drugs for COVID-19 treatment through adverse events analysis

Coronavirus disease 2019 (COVID-19) is an ongoing pandemic and there is an urgent need for safe and effective drugs for COVID-19 treatment. Since developing a new drug is time consuming, many approved or investigational drugs have been repurposed for COVID-19 treatment in clinical trials. Therefore, selection of safe drugs for COVID-19 patients is vital for combating this pandemic. Our goal was to evaluate the safety concerns of drugs by analyzing adverse events reported in post-market surveillance. We collected 296 drugs that have been evaluated in clinical trials for COVID-19 and identified 28,597,464 associated adverse events at the system organ classes (SOCs) level in the FDA adverse events report systems (FAERS). We calculated Z-scores of SOCs that statistically quantify the relative frequency of adverse events of drugs in FAERS to quantitatively measure safety concerns for the drugs. Analyzing the Z-scores revealed that these drugs are associated with different significantly frequent adverse events. Our results suggest that this safety concern metric may serve as a tool to inform selection of drugs with favorable safety profiles for COVID-19 patients in clinical practices. Caution is advised when administering drugs with high Z-scores to patients who are vulnerable to associated adverse events.

59 BASIC BIOLOGICAL SCIENCES↗

Comparison of local and global gyrokinetic calculations of collisionless zonal flow damping in quasi-symmetric stellarators

The linear collisionless damping of zonal flows is calculated for quasi-symmetric stellarator equilibria in flux-tube, flux-surface, and full-volume geometry. Equilibria are studied from the quasi-helical symmetry configuration of the Helically Symmetric eXperiment (HSX), a broken symmetry configuration of HSX, and the quasi-axial symmetry geometry of the National Compact Stellarator eXperiment (NCSX). Zonal flow oscillations and long-time damping affect the zonal flow evolution, and the zonal flow residual goes to zero for small radial wavenumber. The oscillation frequency and damping rate depend on the bounce-averaged radial particle drift in accordance with theory. While each flux tube on a flux surface is unique, several different flux tubes in HSX or NCSX can reproduce the zonal flow damping from a flux-surface calculation given an adequate parallel extent. The flux-surface or flux-tube calculations can accurately reproduce the full-volume long-time residual for moderate kx, but the oscillation and damping time scales are longer in local representations, particularly for small kx approaching the system size.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Adaptation strategies of giant viruses to low-temperature marine ecosystems

Abstract Microbes in marine ecosystems have evolved their gene content to thrive successfully in the cold. Although this process has been reasonably well studied in bacteria and selected eukaryotes, less is known about the impact of cold environments on the genomes of viruses that infect eukaryotes. Here, we analyzed cold adaptations in giant viruses (Nucleocytoviricota and Mirusviricota) from austral marine environments and compared them with their Arctic and temperate counterparts. We recovered giant virus metagenome-assembled genomes (98 Nucleocytoviricota and 12 Mirusviricota MAGs) from 61 newly sequenced metagenomes and metaviromes from sub-Antarctic Patagonian fjords and Antarctic seawater samples. When analyzing our data set alongside Antarctic and Arctic giant viruses MAGs already deposited in the Global Ocean Eukaryotic Viral database, we found that Antarctic and Arctic giant viruses predominantly inhabit sub-10°C environments, featuring a high proportion of unique phylotypes in each ecosystem. In contrast, giant viruses in Patagonian fjords were subject to broader temperature ranges and showed a lower degree of endemicity. However, despite differences in their distribution, giant viruses inhabiting low-temperature marine ecosystems evolved genomic cold-adaptation strategies that led to changes in genetic functions and amino acid frequencies that ultimately affect both gene content and protein structure. Such changes seem to be absent in their mesophilic counterparts. The uniqueness of these cold-adapted marine giant viruses may now be threatened by climate change, leading to a potential reduction in their biodiversity.

Environmental Sciences & Ecology↗

Field-angle dependence of sound velocity in the Weyl semimetal TaAs

The elastic modulus c 44 of a single crystal of the Weyl semimetal TaAs was investigated by measuring relative changes in the sound velocity under application of a magnetic field up to 10 T. Using an ultrasonic pulsed-echo technique, we studied the shear response of the crystal when the angle between the sound wave propagation and the magnetic field is changed. We observe a broken tetragonal symmetry at fields above 6 T, an anisotropy that is likely related to a longitudinal negative magnetoresistance and therefore might provide evidence of the chiral anomaly, one of the main topological signatures of this class of materials. Furthermore, we also observe quantum oscillations in the sound velocity whose frequencies vary with magnetic field orientation. A fan diagram of Landau level indices reveals topological and trivial Berry phases, depending on the field orientation, indicating a sensitivity to different Fermi surface pockets that do or do not enclose Weyl nodes, respectively.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Seasonality regulates the structure and biogeochemical impact of ectomycorrhizal fungal communities across environmentally divergent neotropical dry forests

Abstract Ectomycorrhizal (ECM) symbioses support forest functioning globally, yet both the structure and function of ECM fungal communities in seasonally dry neotropical forests (SDTFs), known for extreme heterogeneity in vegetation and edaphic properties, remain under characterized. Here, we evaluated the relative influences of seasonal versus spatial variation in ECM fungal community structure in soils from four environmentally divergent SDTFs. We also assessed the importance of biotic and abiotic drivers of SDTF ECM fungal community structure at regional scales, as well as ECM impacts on soil carbon (C) and nitrogen (N) cycling. ECM fungal frequency, relative abundance and richness all increased in the wet season, but spatial rather than seasonal effects explained more variation in community composition. Across the four SDTFs investigated, differences in tree communities drove ECM fungal community turnover more than geographic distances, site abiotic conditions or soil chemistry. Although soil moisture and ECM tree basal area were stronger predictors of soil biogeochemistry, incorporating ECM fungal community composition and relative abundance added explanatory power to models of soil C and N cycling in the wet season. Synthesis : Our results highlight the importance of seasonality and plant community composition in shaping different aspects of SDTF ECM fungal community structure and diversity as well as the potential for both the plant and fungal components of ECM symbioses to impact soil functioning across heterogenous SDTFs. Furthermore, our findings suggest that alterations in SDTF plant community composition due to climate or land‐use change will have important consequences for ECM fungal diversity and associated effects on soil biogeochemical cycling.

54 ENVIRONMENTAL SCIENCES↗

Representation of the Convectively Coupled Kelvin Waves in Modern Reanalysis Products

Abstract This study aims to deepen our understanding of the destabilization mechanisms and the mean-state modulation of the convectively coupled Kelvin waves (CCKWs) while testing simple models for CCKWs. We examine CCKW precipitation, vertical structure, and energetics in four modern reanalyses: the fifth version of ECMWF Reanalysis (ERA5), NASA Modern-Era Retrospective Analysis for Research and Applications, version 2 (MERRA-2), the second version of the NCEP Climate Forecast System Reanalysis (CFSR), and the Japanese 55-year Reanalysis (JRA-55). The CCKW precipitation signal strength in the wavenumber–frequency domain and the geographical distribution of CCKW precipitation variability are reasonably represented in all reanalyses, although they commonly underestimate the amplitude of CCKW precipitation. Despite considerable interreanalysis differences in the vertical structure of temperature and diabatic heating anomalies, the eddy available potential energy (EAPE) generation within the CCKWs is found to be associated with the second baroclinic mode whereas the first baroclinic mode damps CCKW EAPE in three out of four reanalyses. Geographically, strong CCKW activity occurs in the areas of high mean-state sea surface temperature (SST), where the second mode EAPE generation is higher, mainly due to a stronger stratiform heating and a tighter wave–convection coupling. Our results are supportive of the simple models for CCKWs in which CCKWs are destabilized within the second baroclinic mode component.

Meteorology & Atmospheric Sciences↗

Commissioning of the Mu2e Data AcQuisition System and the Vertical Slice Test of the Straw Tracker

The report discusses the commissioning of the DAQ system of the Mu2e experiment. We studied how the tracker works and especially the tracker readout. We used a generator to send pulses and we tried to understand the output and non-output of the DTC, in order to validate the event and run format and all the failure modes. In section one, we describe Charged Lepton Flavour Violation, the main purpose of Mu2e, in section two we describe Mu2e experiment. Section three presents the tracker description and readout, meanwhile section four the DAQ system and event building. In section five, we start explaining the analysis we have done on events and all the failure modes we discovered. In section six, we have done an analysis of the logger and boardreader rate, we validated the generator frequency in section seven and studied the number of hits in function of the channel number in section eight. To conclude we investigated the channel to channel time differences in section nine and in section ten we explain our Monte Carlo simulation, reproducing ROCs readout.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Availability of state-level climate change projection resources for use in site-level risk assessment

In recent years, incorporating climate change considerations has become an important focus of organizations’ resilience planning and risk assessment efforts, including United States federal agencies. This has led to an increasing demand for higher-resolution and higher-quality climate projection information that is easy to understand for non-expert users. In particular, there is a demand for information about how climate change may affect high-impact, low-frequency (HILF) hazards that are central to risk assessments focused on infrastructure. While national-level resources like the National Climate Assessment provide information on climate impacts for different sectors and regions in the United States, downscaled information with location-specific context is often required for site-level resilience planning. As higher-resolution and higher-quality climate resources continue to be developed at the state level, it is imperative to understand ongoing and planned efforts, as well as key drivers for developing these state-level resources. Based primarily on stakeholder input from climate experts from 31 states, we identify key state-level climate resources, as well as drivers accelerating the development of these resources. We assess the availability of climate change resources, specifically those with information about HILF events that have been developed at the state level and can support users in conducting site-level resilience planning. We identify three key drivers or predictors for the development of climate change resources at the state level: (1) existence of state laws, mandates, Executive Orders, and other state policies, (2) existence of university partnerships; and (3) the makeup of the stakeholder groups (in terms of dominant discipline/expertise) participating in the effort. The diverse state strategies and resources surveyed in this study could support the incorporation of higher-resolution climate information into site-level planning.

54 ENVIRONMENTAL SCIENCES↗

An Exploration of the Equation of State Dependence of Core-collapse Supernova Explosion Outcomes and Signatures

We explore, using a state-of-the-art simulation code in 3D and late-enough times to witness final observables, the dependence of core-collapse supernova explosions on the nuclear equation of state (EOS). Going beyond questions of explodability, we compare final explosion energies, nucleosynthetic yields, recoil kicks, and gravitational-wave and neutrino signatures using the SFHo and DD2 nuclear EOSs for a 9 M ⊙ /solar-metallicity progenitor star. The DD2 EOS is stiffer and has a lower effective nucleon mass. The result is a more extended protoneutron star (PNS) and lower central densities. As a consequence, the mean neutrino energies, final explosion energy, and recoil kick speed are lower. Moreover, the evolution of PNS convection differs between the two EOS models in significant ways. This translates in part into interestingly altered neutrino “light” curves and noticeably altered gravitational-wave signal strengths and frequency characteristics that may be diagnostic. The faster exploding model (SFHo) yields slightly more neutron-rich ejecta and more species with atomic weights between 60 and 90 and a weak r-process. However, this is merely a preliminary study. The next step is a more comprehensive and multiprogenitor set of 3D supernova simulations for various EOSs to late times when the observables have asymptoted. Such a future investigation will have a direct bearing on the neutron star and black hole birth mass functions and the quest toward a fully quantitative theory of supernova observables.

Rusakov, Aleksandr [Princeton University, NJ (Unit↗

A Reversed Impedance-Based Stability Criterion for IBR Grids: Preprint

The existing impedance-based stability criterion is effective for analyzing local control interactions; however, it is difficult to scale the existing criterion to analyze wide-area control interactions among numerous IBRs through a complex power system network. The scaled version of the existing criterion requires the impedance response of each IBR in the system as well as of the network looking from all the IBRs. It is quite challenging to obtain all these impedance responses because of the computational effort and the requirement of separately scanning the impedance of the network and the IBRs. We propose a reversed criterion for the impedance-based stability analysis to address these problems. In contrast to the existing criterion, the reversed criterion analyzes the stability of a power system when an IBR is disconnected from the system. The reversed criterion estimates the impact of an IBR on the frequency and damping of power system oscillation modes using the impedance scans of only the IBR and the grid at its terminal. It can be sequentially applied at different IBRs to evaluate their impact on the power system stability. In addition to scalability, the reversed criterion gives flexibility to focus only on a few selected IBRs, depending on their rating, the magnitude of oscillations observed at their terminals, and the vendor support available for implementing stabilizing control system updates. The reversed criterion is demonstrated on a 14-bus power system with 100% IBRs.

control interactions↗

Evaluating EAMv2 Simulated High Latitude Clouds Using ARM Measurements in the Northern and Southern Hemispheres

Here, this study evaluates high latitude stratiform mixed-phase clouds (SMPC) in the atmosphere model of the Energy Exascale Earth System Model version 2 (EAMv2) by utilizing one-year-long ground-based remote sensing measurements from the Atmospheric Radiation and Measurement (ARM) program. A nudging approach is applied to model simulations for a constrained comparison with the ARM observations. Observed and modeled SMPCs are sampled and collocated to address the difference in data resolution, so that we can consistently evaluate their macrophysical properties at the North Slope of Alaska (NSA) site in the Arctic and the McMurdo (AWR) site in the Antarctic. We found that EAMv2 overestimates SMPC frequency of occurrence at both sites. However, the model captures the observed larger cloud frequency of occurrence at the NSA site. For collocated SMPCs, the annual statistics of observed cloud macrophysics are generally reproduced at the NSA site, while at the AWR site, there are larger biases. Compared to the AWR site, the lower cloud top and cloud base and the warmer cloud top temperature observed at NSA are well simulated. On the other hand, simulated cloud phase is substantially biased. The model largely overestimates liquid water path, and the ice water path is underestimated at NSA, but at AWR, the liquid water path is frequently underestimated due to the dominance of snow in Antarctic SMPCs. As a result, the observed hemispheric difference in cloud phase partitioning is misrepresented in EAMv2. This study implies that additional model development is needed for high latitude mixed-phase clouds.

54 ENVIRONMENTAL SCIENCES↗

Forced Component Estimation Statistical Method Intercomparison Project (ForceSMIP)

Anthropogenic climate change is unfolding rapidly, yet its regional manifestation can be obscured by internal variability. A primary goal of climate science is to identify the externally forced climate response from among the noise of internal variability. Separating the forced response from internal variability can be addressed in climate models by using a large ensemble to average over different possible realizations of internal variability. However, with only one realization of the real world, it is a major challenge to isolate the forced response directly in observations. In the Forced Component Estimation Statistical Method Intercomparison Project (ForceSMIP), contributors used existing and newly developed statistical and machine learning methods to estimate the forced response over 1950–2022 within individual realizations of the climate system. Participants used neural networks, linear inverse models, fingerprinting methods, and low-frequency component analysis, among other approaches. These methods were trained using large ensembles from multiple climate models and then applied to observations. Here, we evaluate method performance within large ensembles and investigate the estimates of the forced response in observations. Our results show that many different types of methods are skillful for estimating the forced response in climate models, though the relative skill of individual methods varies depending on the variable and evaluation metric. Methods with comparable skill in models can give a wide range of estimates of the forced response pattern in observations, illustrating the epistemic uncertainty in forced response estimates. ForceSMIP gives new insights into the forced response in observations, its uncertainty, and methods for its estimation.

Climate attribution↗

The influence of packing structure and interparticle forces on ultrasound transmission in granular media

Ultrasound propagation through externally stressed, disordered granular materials was experimentally and numerically investigated. Experiments employed piezoelectric transducers to excite and detect longitudinal ultrasound waves of various frequencies traveling through randomly packed sapphire spheres subjected to uniaxial compression. The experiments featured in situ X-ray tomography and diffraction measurements of contact fabric, particle kinematics, average per-particle stress tensors, and interparticle forces. The experimentally measured packing configuration and inferred interparticle forces at different sample stresses were used to construct spring networks characterized by Hessian and damping matrices. The ultrasound responses of these network were simulated to investigate the origins of wave velocity, acoustic paths, dispersion, and attenuation. Results revealed that both packing structure and interparticle force heterogeneity played an important role in controlling wave velocity and dispersion, while packing structure alone quantitatively explained most of the observed wave attenuation. This research provides insight into time- and frequency-domain features of wave propagation in randomly packed granular materials, shedding light on the fundamental mechanisms controlling wave velocities, dispersion, and attenuation in such systems.

36 MATERIALS SCIENCE↗

Vibrational Properties of a Naturally Occurring Semiconducting van der Waals Heterostructure

We present vibrational properties of Franckeite, which is a naturally occurring van der Waals heterostructure consisting of two different semiconducting layers. Franckeite is a complex layered crystal composed of alternating SnS 2 -like pseudohexagonal and PbS-like pseudotetragonal layers stacked on top of each other, providing a unique platform to study vibrational properties and thermal transport across layers with mass density and phonon mismatches. Using micro-Raman spectroscopy and first-principles Raman simulations, we found that the PbS-like pseudotetragonal structure is mostly composed of Pb 3 SbS 4 . We also discovered several low-frequency Raman modes that originate from the intralayer vibrations of the pseudotetragonal layer. Using density functional theory, we determined all vibrational patterns of Franckeite, whose signatures are observed in the Raman spectrum. By studying temperature-dependent Raman spectroscopy (300–500 K), we have found different temperature coefficients for both pseudotetragonal and pseudohexagonal layers. Here, we believe that our study will help understand the vibration modes of its complex heterostructure and the thermal properties at the nanoscale.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Impact of Model Resolution on Tropical Cyclone Simulation Using the HighResMIP–PRIMAVERA Multimodel Ensemble

A multimodel, multiresolution set of simulations over the period 1950–2014 using a common forcing protocol from CMIP6 HighResMIP have been completed by six modeling groups. Analysis of tropical cyclone performance using two different tracking algorithms suggests that enhanced resolution toward 25 km typically leads to more frequent and stronger tropical cyclones, together with improvements in spatial distribution and storm structure. Both of these factors reduce typical GCM biases seen at lower resolution. Using single ensemble members of each model, there is little evidence of systematic improvement in interannual variability in either storm frequency or accumulated cyclone energy as compared with observations when resolution is increased. Changes in the relationships between large-scale drivers of climate variability and tropical cyclone variability in the Atlantic Ocean are also not robust to model resolution. However, using a larger ensemble of simulations (of up to 14 members) with one model at different resolutions does show evidence of increased skill at higher resolution. The ensemble mean correlation of Atlantic interannual tropical cyclone variability increases from ~0.5 to ~0.65 when resolution increases from 250 to 100 km. In the northwestern Pacific Ocean the skill keeps increasing with 50-km resolution to 0.7. These calculations also suggest that more than six members are required to adequately distinguish the impact of resolution within the forced signal from the weather noise.

54 ENVIRONMENTAL SCIENCES↗

A Privacy First Path Analysis using Clickstream Data

In the modern digital economy, data-driven decision making is crucial for effectively meeting the ever-evolving demands of consumer engagement and satisfaction. Clickstream data has become invaluable for understanding customer behavior, yet concerns over privacy and security persist, especially with some internet service providers profiting from its sale. This article introduces an innovative methodology that blends experiential learning with advanced cryptographic techniques, including differential privacy and graph analytics. The core objective of this methodology is to estimate Customer Lifetime Value (CLV) by analyzing clickstream data, achieving an average prediction accuracy of 92.4% in user engagement levels while ensuring user anonymity through Recency, Frequency, and Monetary (RFM) analysis. Our study introduces the concept of a “data depositor” and a privacy manager, employing the composition theorem to merge non-adaptive queries effectively. Privacy budgets (? = 1.0, d = 10-5), sensitivity-specific techniques, and data partitioning were applied. Randomization and noise addition protect data integrity, with special handling for categorical values. This approach, differing from prior studies, offers a 12.6% improvement in privacy-preserving targeting accuracy while maintaining strict confidentiality, presenting a novel path forward in data-driven decision-making.

Frequency and Monetary (RFM) analysis↗

Wireless Frequency‐Multiplexed Acoustic Array‐Based Acoustofluidics

Abstract Acoustofluidics has shown great potential in enabling on‐chip technologies for driving liquid flows and manipulating particles and cells for engineering, chemical, and biomedical applications. To introduce on‐demand liquid sample processing and micro/nano‐object manipulation functions to wearable and embeddable electronics, wireless acoustofluidic chips are highly desired. This paper presents wireless acoustofluidic chips to generate acoustic waves carrying sufficient energy and achieve key acoustofluidic functions, including arranging particles and cells, generating fluid streaming, and enriching in‐droplet particles. To enable these functions, the wireless acoustofluidic chips leverage mechanisms, including inductive coupling‐based wireless power transfer (WPT), frequency multiplexing‐based control of multiple acoustic waves, and the resultant acoustic radiation and drag forces. For validation, the wirelessly generated acoustic waves are measured using laser vibrometry when different materials (e.g., bone, tissue, and hand) are inserted between the WPT transmitter and receiver. Moreover, the wireless acoustofluidic chips successfully arrange nanoparticles into different patterns, align cells into parallel pearl chains, generate streaming, and enrich in‐droplet microparticles. This research is anticipated to facilitate the development of embeddable wireless on‐chip flow generators, wearable sensors with liquid sample processing functions, and implantable devices with flow generation and acoustic stimulation abilities for engineering, veterinary, and biomedical applications.

Li, Jiali↗

Adapting Optimal Velocity Tracking Control to Account for WEC Constraints and Power-Take-Off Efficiencies: Preprint

Wave energy converters (WECs) come in many different forms, from point absorbers, oscillating water columns, to bulge wave devices. This paper focuses on the control of point absorber WECs, which typically have a narrow-banded frequency response and, therefore, control is well placed to improve the energy capture of such WECs. The acausal nature of the control problem means that theoretically optimal control is almost impossible to achieve inpractice; however optimal velocity tracking (OVT) offers a simple and robust approximation to optimal control that can achieve better power capture than passive linear damping methods, albeit with necessarily higher force demands. OVT is a form of impedance matching and the magnitude of the power-take off (PTO) force demand is often not linearly proportional to the WEC velocity, which can lead to PTO force and speed combinations far from the optimalPTO efficiency. The highly non-linear PTO force and speed to efficiency mapping can, without remedial measures, severely diminish the effectiveness of OVT techniques. In this paper, limits to the movement and force of the PTO are demonstrated, allowing OVT to be more easily applied in practice. The effect of PTO efficiency is explored, and a potential solution to the problem of adapting control to account for efficiency is presented. Both aspects of the work presented highlight the requirement for co-design of the WEC, PTO, and controller.

conversion efficiency↗