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At least 1,117 records · Page 62

Open Data Integration (ODIN): A Concurrent, Distributed Message-Based Architecture and Framework for Disaster Response

The Runtime for Airspace Concept Evaluation (RACE) is an open-source software architecture and framework to build configurable, highly concurrent and distributed message-based systems that offer scalable, low-latency performance on commodity hardware. RACE was used in commercial aviation applications to rapidly build systems that span several machines (including synchronized displays), interface existing hardware simulators and other live data feeds, and incorporate sophisticated visualization components such as NASA WorldWind. These RACE applications validated elements of the FAA’s System Wide Information Management (SWIM) Program, handling up to 1000 messages/sec from diverse sources (SFDPS, TFM-DATA, TAIS, ASDE-X, ITWS and local ADS) for 4,500 simultaneous flights tracked in the next-generation air transportation system’s digital backbone. We have since generalized RACE to support Open Data Integration (ODIN) applications outside aviation. Systems built with RACE/ODIN can be deployed in the field, on commodity hardware, and operate with limited or intermittent connectivity to the outside world. Our primary use case is a web-server with local/persistent data storage that runs within and only serves the stakeholder network (e.g. an incident command post). We are tailoring the RACE/ODIN system to support wildland fire management for the upcoming NASA Wildland Fire Safety Demonstration Series. RACE-ODIN is under consideration for application in the Scalable Traffic Management for Emergency Response Operations project, or STEReO, which aims to create a system that can be deployed during emergencies, to coordinate multiple elements of disaster response. Such data sources predominantly come from existing services on the internet (e.g. weather and satellite data, imported from so called "edge servers") but can also include dynamic (real-time) data from computer simulations and within the stakeholder network (such as aircraft and personnel tracking information). We will present the architecture and ODIN system demonstration incorporating local data from instrumented power-line towers, interpolated weather data and geospatial data from space-based platforms.

Joseph C Coughlan↗

Open Data Integration (ODIN): A Concurrent, Distributed Message-Based Architecture and Framework for Disaster Response

The Runtime for Airspace Concept Evaluation (RACE) is an open-source software architecture and framework to build configurable, highly concurrent and distributed message-based systems that offer scalable, low-latency performance on commodity hardware. RACE was used in commercial aviation applications to rapidly build systems that span several machines (including synchronized displays), interface existing hardware simulators and other live data feeds, and incorporate sophisticated visualization components such as NASA WorldWind. These RACE applications validated elements of the FAA’s System Wide Information Management (SWIM) Program, handling up to 1000 messages/sec from diverse sources (SFDPS, TFM-DATA, TAIS, ASDE-X, ITWS and local ADS) for 4,500 simultaneous flights tracked in the next-generation air transportation system’s digital backbone. We have since generalized RACE to support Open Data Integration (ODIN) applications outside aviation. Systems built with RACE/ODIN can be deployed in the field, on commodity hardware, and operate with limited or intermittent connectivity to the outside world. Our primary use case is a web-server with local/persistent data storage that runs within and only serves the stakeholder network (e.g. an incident command post). We are tailoring the RACE/ODIN system to support wildland fire management for the upcoming NASA Wildland Fire Safety Demonstration Series. RACE-ODIN is under consideration for application in the Scalable Traffic Management for Emergency Response Operations project, or STEReO, which aims to create a system that can be deployed during emergencies, to coordinate multiple elements of disaster response. Such data sources predominantly come from existing services on the internet (e.g. weather and satellite data, imported from so called "edge servers") but can also include dynamic (real-time) data from computer simulations and within the stakeholder network (such as aircraft and personnel tracking information). We will present the architecture and ODIN system demonstration incorporating local data from instrumented power-line towers, interpolated weather data and geospatial data from space-based platforms.

Guillaume P Brat↗

RadSim: Math, Utility & RTK

This package includes three parts, (1) gov.llnl.math, (2)gov.llnl.utility and (3)gov.llnl.rtk, which are utilized in the development of Radiation Detector Simulator (RadSim) project. RadSim is being developed to provide the capability to: (1) simulate radiation source emissions, (2) interpolate results from radiation transport tools into a common format to prepare incident flux, and (3) model radiation detector response to rapidly produce synthetic radiation measurement templates. RadSim is targeted for open-source release, which will enable researchers and industry partners to model gamma-ray detectors response to simulated flux from the transport tool of their choice. The techniques and implementation will be entirely transparent, which will allow for improvements and boutique modifications by future researchers beyond the lifespan of this specific project. The first tool of the package, gov.llnl.math, includes classes and functions to define and perform basic math operations. Some of the example features available in the package include defining statistical distributions and performing algebra and matrix operations, all of which are already accessible on publicly available software packages such as MATLAB and ROOT. The second package gov.llnl.utility includes tools commonly used to enable optimization and readability of various data structures such as Java lists and external xml files. Lastly, the gov.llnl.rtk package includes classes and functions to implement methods commonly used in radiation physics, such as data structures to represent and characterize photon spectra and tools to apply well-defined and published methods to calibrate a given spectra.

Cheung, Hoi Sing↗

RadSim: ENSDF, Xray and N42

This package includes three parts, (1) gov.bnl.nndc.ensdf, (2) gov.nist.xray and (3) gov.nist.physics.n42, which are utilized in the development of Radiation Detector Simulator (RadSim) project. RadSim is being developed to provide the capability to: (1) simulate radiation source emissions, (2) interpolate results from radiation transport tools into a common format to prepare incident flux, and (3) model radiation detector response to rapidly produce synthetic radiation measurement templates. RadSim is targeted for open-source release, which will enable researchers and industry partners to model gamma-ray detectors response to simulated flux from the transport tool of their choice. The first tool of the package, gov.bnl.nndc.ensdf, includes functionality to parse and split publicly available decay records in ENSDF format, and pull the relevant information from ENSDF libraries. The second tool, gov.nist.xray, provides Xray information using the public NIST database. Lastly, gov.nist.physics.n42, is a tool used to convert an N42 xml file into a Java object that can be interfaced within a Java program.

Hangal, DnaushA↗

Adaptive-Sweep Algorithm for Spacecraft Carrier Acquisition and Tracking: System Analysis and Implementation

This paper presents an adaptive-sweep algorithm that can be used in conjunction with a Phased-Lock Loop to acquire and track the carrier of a Binary Phase-shift Keying signal with residual carrier. This algorithm is useful in proximity links where no Doppler pre-compensation is available at the transmitter, and allows the receiver to acquire the incoming carrier even if the experienced Doppler shift is several orders of magnitude larger than the PLL bandwidth. Other applications for this algorithm include Multiple Uplink per Antenna at the Deep Space Network, and generation of observables (Doppler shift, Doppler rate, range rate) for in-situ navigation purposes. This paper enhances a previously presented adaptive-sweep algorithm and its performance analysis in two fronts. First, the algorithm now uses the direction function to automatically estimate the required frequency jump to achieve PLL lock. This enables a fully adaptive-sweep scheme in which system implementer does not need to manually select thresholds. On the other hand, we study the system performance in the presence of Additive White Gaussian Noise and derive necessary conditions for the system to operate at low signal-to-noise conditions. This allows us to create design rules that specify all parameters of the algorithm given a set of system-level requirements. To test the performance of the proposed algorithm, we implement it in GNU Radio, an open-source Software-Defined Radio that interfaces with several commercial radio peripherals. We use this implementation to demonstrate carrier lock and quantify system performance under different noise conditions. We also test the algorithm using open-loop recordings of two downlinks between the Lunar Reconnaissance Orbiter and the Deep Space Network. We show that even after large frequency jumps (tens of kHz), the proposed system is able to rapidly reacquire the carrier and continue operation.

Divsalar, Dariush↗

useeio-infra-app

This GitHub repository hosts the source code to an RShiny web application that implements the U.S. Environmentally-Extended Input-Output (USEEIO) model in order to conduct a screening-level life cycle analysis. The USEEIO model is an open-source model developed and maintained by the Environmental Protection Agency (EPA), along with colleagues and contractors, and is available on GitHub (https://github.com/USEPA/USEEIO). The USEEIO model incorporates environmental data into pre-existing Economic Input-Output Models, which look at the interdependence of different economic industries. In this web application, the focus is on energy infrastructure applications; however, it can be used to implement USEEIO in any area for which this model is applicable.

AS↗

Energy Model of an Air Source Heat Pump to Explore Performance Improvements under Cold Conditions: A Python Framework: Preprint

Replacing combustion appliances with heat pumps can be part of a strategy to electrify buildings. When their electricity is supplied by renewables, the adoption of heat pumps for space heating may help curb the carbon dioxide emissions inherent to traditional heating systems that burn natural gas or coal. When operating in very cold climates, however, heat pump performance deteriorates, sometimes requiring backup heating supplied by electric resistances or other sources to continue to function. To avoid the use of electric resistances, complementary technologies, like thermal energy storage, solar collectors, or alternative refrigerants, have been explored in recent years. In this study, we present an open-source Python-based numerical model developed to evaluate the annual hourly performance of an air source heat pump (ASHP) operating in the USA. Simulation results include coefficient of performance and heating capacity. The model, validated with experimental results, will be employed in the future to investigate the feasibility of integrating thermal energy storage and other technologies into ASHPs operating in cold climates.

cold climate↗

Measuring and Simulating T1 and T2 for Qubits

Quantum computers perform computations exploiting quantum mechanics to a possible advantage, allowing us to prepare and manipulate states that do not have a classical equivalent. In particular, phenomena like superposition and entanglement may enable quantum computers to outperform their classical counterparts in certain applications. Implementing these useful quantum algorithms is contingent upon building accurate quantum hardware that is not affected by noise. Environmental noise decreases coherence time of qubits, meaning that qubits do not stay in a desired state long enough to carry out a complex computation. To that end, harnessing the full power of quantum computers necessitate characterization of noise sources and how they impact a given quantum system. Often times, T1and T2 are used to quantify noise. In this project, we provide an approach as to how T1 and T2 values are calculated and simulated for quantum systems. In addition, we compare simulated values of T1 and T2 with those of real quantum computer’s measurements. IBMQ Experience, an open source software allowing users to simulate and use real quantum hardware, is used. QuTip, a Python-based toolbox offering quantum simulation tools for open quantum systems, is also used.

Youssef, Rahaf↗

PubDAS: A PUBlic Distributed Acoustic Sensing Datasets Repository for Geosciences

During the past few years, distributed acoustic sensing (DAS) has become an invaluable tool for recording high-fidelity seismic wavefields with great spatiotemporal resolutions. However, the considerable amount of data generated during DAS experiments limits their distribution with the broader scientific community. Such a bottleneck inherently slows down the pursuit of new scientific discoveries in geosciences. Here, we introduce PubDAS—the first large-scale open-source repository where several DAS datasets from multiple experiments are publicly shared. PubDAS currently hosts eight datasets covering a variety of geological settings (e.g., urban centers, underground mines, and seafloor), spanning from several days to several years, offering both continuous and triggered active source recordings, and totaling up to ~90 TB of data. Here this article describes these datasets, their metadata, and how to access and download them. Some of these datasets have only been shallowly explored, leaving the door open for new discoveries in Earth sciences and beyond.

54 ENVIRONMENTAL SCIENCES↗

Data-Driven Software Framework for Web-Based ISS Telescience

Software that enables authorized users to monitor and control scientific payloads aboard the International Space Station (ISS) from diverse terrestrial locations equipped with Internet connections is undergoing development. This software reflects a data-driven approach to distributed operations. A Web-based software framework leverages prior developments in Java and Extensible Markup Language (XML) to create portable code and portable data, to which one can gain access via Web-browser software on almost any common computer. Open-source software is used extensively to minimize cost; the framework also accommodates enterprise-class server software to satisfy needs for high performance and security. To accommodate the diversity of ISS experiments and users, the framework emphasizes openness and extensibility. Users can take advantage of available viewer software to create their own client programs according to their particular preferences, and can upload these programs for custom processing of data, generation of views, and planning of experiments. The same software system, possibly augmented with a subset of data and additional software tools, could be used for public outreach by enabling public users to replay telescience experiments, conduct their experiments with simulated payloads, and create their own client programs and other custom software.

Tso, Kam S.↗

A Climatology and Life‐Cycle Characteristics of Atmospheric Fronts and Their Associated Precipitation

Abstract Atmospheric fronts are one of the main sources of mid‐latitude variability. We employ a novel method for identifying and tracking fronts and frontal precipitation. Thermal and dynamical variables are used to identify fronts as areal objects in space, which are tracked in time using the open‐source TempestExtremes software package. Precipitation objects are co‐located to identify frontal precipitation. The method is subjected to validation and sensitivity tests using manually curated data from the National Weather Service. Climatologies of fronts and frontal precipitation are computed from reanalysis and observations; fronts are present upwards of 14% of the time in the storm tracks, and represent the majority (up to 90%) of total and extreme precipitation. Novel aspects of the method are showcased through the lifetime characteristics of fronts across North America. Three sets of warm and cold fronts were discovered, and their duration, distance‐traveled, and translation velocity are examined. Plain Language Summary Mid‐latitude low‐pressure systems and weather fronts are important for our day‐to‐day experience of weather events, particularly in the mid‐latitudes. This work makes use of standardized atmospheric data and creates a method of automatically tracking these important atmospheric features and their precipitation to quantify their relative role in global precipitation. Weather fronts are persistent in the mid‐latitudes and are associated with the majority of precipitation–particularly the most intense precipitation. Trajectories of fronts over North America are categorized to create a set of archetypal fronts that occur in that region. The differences between these types of fronts are characterized. Key Points An automated, efficient, and skillful frontal detection algorithm is developed and validated Fronts contribute a larger fraction of extreme precipitation than all precipitation in mid‐latitude storm tracks Fronts across North America have substantial variation in characteristics depending on their origin location

extratropical cyclone↗

Tropical Rainfall Measuring Mission (TRMM) Precipitation Data and Services for Research and Applications

Precipitation is a critical component of the Earth's hydrological cycle. Launched on 27 November 1997, TRMM is a joint U.S.-Japan satellite mission to provide the first detailed and comprehensive data set of the four-dimensional distribution of rainfall and latent heating over vastly under-sampled tropical and subtropical oceans and continents (40 S - 40 N). Over the past 14 years, TRMM has been a major data source for meteorological, hydrological and other research and application activities around the world. The purpose of this short article is to inform that the NASA Goddard Earth Sciences Data and Information Services Center (GES DISC) provides TRMM archive and near-real-time precipitation data sets and services for research and applications. TRMM data consist of orbital data from TRMM instruments at the sensor s resolution, gridded data at a range of spatial and temporal resolutions, subsets, ground-based instrument data, and ancillary data. Data analysis, display, and delivery are facilitated by the following services: (1) Mirador (data search and access); (2) TOVAS (TRMM Online Visualization and Analysis System); (3) OPeNDAP (Open-source Project for a Network Data Access Protocol); (4) GrADS Data Server (GDS); and (5) Open Geospatial Consortium (OGC) Web Map Service (WMS) for the GIS community. Precipitation data application services are available to support a wide variety of applications around the world. Future plans include enhanced and new services to address data related issues from the user community. Meanwhile, the GES DISC is preparing for the Global Precipitation Measurement (GPM) mission which is scheduled for launch in 2014.

Liu, Zhong↗

Publication of the Belle II Software

The Belle II software was developed by a few hundred individual contributors over several years. Following the rising desire of making it publicly available, the collaboration established open source software policies and procedures. The political and technical challenges and their solutions at Belle II are discussed in this article. With the publication of the Belle II software, basf2, on GitHub and Zenodo in 2021 an important milestone towards open science was reached.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Collision Tracking in OpenMC: Methods and Applications in Neutron Noise, Neutron Imaging, Time-of-Flight, and Multiplicity Counting

We present the development and application of a collision tracking feature within the OpenMC Monte Carlo particle transport code, designed for diverse applications such as neutron spectroscopy, scatter camera system, neutron noise, and multiplicity counting simulations. This feature enables the tracking of individual particle collisions, with potential applications in nuclear nonproliferation, reactor physics, and nuclear security. Additionally, the feature holds potential for the calibration of neutron detectors, specifically in converting light output into energy deposited within the detectors. The implementation consists of a set of filters—such as reaction type, energy, cell, and material—that constrain the set of collisions that are tracked, extensions to the Python API to enable simple input specification, and support for writing either OpenMC’s native HDF5-based format or the Monte Carlo particle list format. This feature was added to the official OpenMC release in version 0.15.3. In this work, the feature will be applied to showcase scenarios such as time-of-flight simulations, scatter-camera imaging for neutron source localization, neutron-noise analysis to extract integral kinetic parameters such as the prompt decay constant α, and multiplicity counting to estimate the mass of special nuclear materials. Ultimately, this feature aims to expand the application scope of open-source Monte Carlo particle transport codes such as OpenMC.

Monte Carlo code↗

Spinteract: a program to refine magnetic interactions to diffuse scattering data

Magnetic diffuse scattering—the broad magnetic scattering features observed in neutron-diffraction data above a material's magnetic ordering temperature—provides a rich source of information about the material's magnetic Hamiltonian. However, this information has often remained under-utilised due to a lack of available computer software that can fit values of magnetic interaction parameters to such data. Here, an open-source computer program, Spinteract, is presented, which enables straightforward refinement of magnetic interaction parameters to powder and single-crystal magnetic diffuse scattering data. Here, the theory and implementation of this approach are summarised. Examples are presented of refinements to published experimental diffuse-scattering data sets for the canonical antiferromagnet MnO and the highly-frustrated classical spin liquid Gd 3 Ga 5 O 12 . Guidelines for data collection and refinement are outlined, and possible developments of the approach are discussed.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Benchmarking a Proof-of-Concept Performance Portable SYCL-based Fast Fourier Transformation Library

ABSTRACT In this paper, we present an early version of a SYCL-based FFT library, capable of running on all major vendor hardware, including CPUs and GPUs from AMD, ARM, Intel and NVIDIA. The current limitations of our library is it supports single-dimension FFTs up to 211 in length and base-2 input sequences. Although preliminary, the aim of this work is to seed further developments for a rich set of features for calculating FFTs. The library has the advantage over existing portable FFT libraries in that it is single-source, and there- fore removes the complexities that arise due to abundant use of pre-processor macros and auto-generated kernels to target different architectures. We exercise two SYCL-enabled compilers, Codeplay ComputeCpp and Intel's open-source LLVM project, to evaluate performance portability of our SYCL-based FFT on various hetero- geneous architectures.We provide studies comparing our portable library with highly optimized vendor-specific FFT libraries, and discuss potential sources hindering performance.

97 MATHEMATICS AND COMPUTING↗

Removing Atmospheric Fringes from Zwicky Transient Facility i-band Images using Principal Component Analysis

The Zwicky Transient Facility is a time-domain optical survey that has substantially increased our ability to observe and construct massive catalogs of astronomical objects by use of its 47 square degree camera that can observe in multiple filters. However the telescope’s i-band filter suffers from significant atmospheric fringes that reduce photometric precision, especially for faint sources and in multi-epoch co-additions. Here we present a method for constructing models of these atmospheric fringes using Principal Component Analysis that can be used to identify and remove these artifacts from contaminated images. In addition, we present the Uniform Background Indicator as a quantitative measurement of the reduced correlated background noise and photometric error present after removing fringes. We conclude by evaluating the effect of our method on measuring faint sources through the injection and recovery of artificial stars in both single-image epochs and co-additions. Our method for constructing atmospheric fringe models and applying those models to produce cleaned images is available for public download in the open source Python package fringez.

79 ASTRONOMY AND ASTROPHYSICS↗

ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data

Background: Metagenomics and metatranscriptomics studies provide valuable insight into the composition and function of microbial populations from diverse environments, however the data processing pipelines that rely on mapping reads to gene catalogs or genome databases for cultured strains yield results that underrepresent the genes and functional potential of uncultured microbes. Recent improvements in sequence assembly methods have eased the reliance on genome databases, thereby allowing the recovery of genomes from uncultured microbes. However, configuring these tools, linking them with advanced binning and annotation tools, and maintaining provenance of the processing continues to be challenging for researchers. Results: Here we present ATLAS, a software package for customizable data processing from raw sequence reads to functional and taxonomic annotations using state-of-the-art tools to assemble, annotate, quantify, and bin metagenome and metatranscriptome data. Genome-centric resolution and abundance estimates are provided for each sample in a dataset. ATLAS is written in Python and the workflow implemented in Snakemake; it operates in a Linux environment, and is compatible with Python 3.5+ and Anaconda 3+ versions. The source code for ATLAS is freely available, distributed under a BSD-3 license. Conclusions: ATLAS provides a user-friendly, modular and customizable Snakemake workflow for metagenome and metatranscriptome data processing; it is easily installable with conda and maintained as open-source on GitHub at https://github.com/metagenome-atlas/atlas.

59 BASIC BIOLOGICAL SCIENCES↗