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At least 1,117 records · Page 62

Real-time discovery of AT2020xnd: a fast, luminous ultraviolet transient with minimal radioactive ejecta

ABSTRACT The many unusual properties of the enigmatic AT2018cow suggested that at least some subset of the empirical class of fast blue optical transients (FBOTs) represents a genuinely new astrophysical phenomenon. Unfortunately, the intrinsic rarity and fleeting nature of these events have made it difficult to identify additional examples early enough to acquire the observations necessary to constrain theoretical models. We present here the Zwicky Transient Facility discovery of AT2020xnd (ZTF20acigmel, the ‘Camel’) at z = 0.243, the first unambiguous AT2018cow analogue to be found and confirmed in real time. AT2018cow and AT2020xnd share all key observational properties: a fast optical rise, sustained high photospheric temperature, absence of a second peak attributable to ejection of a radioactively heated stellar envelope, extremely luminous radio, millimetre, and X-ray emission, and a dwarf-galaxy host. This supports the argument that AT2018cow-like events represent a distinct phenomenon from slower-evolving radio-quiet supernovae, likely requiring a different progenitor or a different central engine. The sample properties of the four known members of this class to date disfavour tidal disruption models but are consistent with the alternative model of an accretion powered jet following the direct collapse of a massive star to a black hole. Contextual filtering of alert streams combined with rapid photometric verification using multiband imaging provides an efficient way to identify future members of this class, even at high redshift.

79 ASTRONOMY AND ASTROPHYSICS↗

Some observational tests of a minimal galaxy formation model

Dark matter simulations can serve as a basis for creating galaxy histories via the galaxy–dark matter connection. One such model by Becker is implemented with several variations on three different dark matter simulations. Stellar mass and star formation rates are assigned to all simulation subhaloes at all times, using subhalo mass gain to determine stellar mass gain. The observational properties of the resulting galaxy distributions are compared to each other and observations for a range of redshifts from 0 to 2. Although many of the galaxy distributions seem reasonable, there are noticeable differences as simulations, subhalo mass gain definitions or subhalo mass definitions are altered, suggesting that the model should change as these properties are varied. Agreement with observations may improve by including redshift dependence in the added-by-hand random contribution to star formation rate. There appears to be an excess of faint quiescent galaxies as well (perhaps due in part to differing definitions of quiescence). The ensemble of galaxy formation histories for these models tend to have more scatter around their average histories (for a fixed final stellar mass) than the two more predictive and elaborate semi-analytic models of Guo et al. and Henriques et al., and require more basis fluctuations (using principal component analysis) to capture 90 per cent of the scatter around their average histories. The codes to plot model predictions (in some cases alongside observational data) are publicly available to test other mock catalogues at https://github.com/jdcphysics/validation/. Information on how to use these codes is in Appendix A.

79 ASTRONOMY AND ASTROPHYSICS↗

A minimal motif for sequence recognition by mitochondrial transcription factor A (TFAM)

Abstract Mitochondrial transcription factor A (TFAM) plays a critical role in mitochondrial transcription initiation and mitochondrial DNA (mtDNA) packaging. Both functions require DNA binding, but in one case TFAM must recognize a specific promoter sequence, while packaging requires coating of mtDNA by association with non sequence-specific regions. The mechanisms by which TFAM achieves both sequence-specific and non sequence-specific recognition have not yet been determined. Existing crystal structures of TFAM bound to DNA allowed us to identify two guanine-specific interactions that are established between TFAM and the bound DNA. These interactions are observed when TFAM is bound to both specific promoter sequences and non-sequence specific DNA. These interactions are established with two guanine bases separated by 10 random nucleotides (GN10G). Our biochemical results demonstrate that the GN10G consensus is essential for transcriptional initiation and contributes to facilitating TFAM binding to DNA substrates. Furthermore, we report a crystal structure of TFAM in complex with a non sequence-specific sequence containing a GN10G consensus. The structure reveals a unique arrangement in which TFAM bridges two DNA substrates while maintaining the GN10G interactions. We propose that the GN10G consensus is key to facilitate the interaction of TFAM with DNA.

59 BASIC BIOLOGICAL SCIENCES↗

Crystals of $\mathrm{TELSAM}$–target protein fusions that exhibit minimal crystal contacts and lack direct inter-$\mathrm{TELSAM}$ contacts

While conducting pilot studies into the usefulness of fusion to TELSAM polymers as a potential protein crystallization strategy, we observed novel properties in crystals of two TELSAM–target protein fusions, as follows. (i) A TELSAM–target protein fusion can crystallize more rapidly and with greater propensity than the same target protein alone. (ii) TELSAM–target protein fusions can be crystallized at low protein concentrations. This unprecedented observation suggests a route to crystallize proteins that can only be produced in microgram amounts. (iii) The TELSAM polymers themselves need not directly contact one another in the crystal lattice in order to form well-diffracting crystals. This novel observation is important because it suggests that TELSAM may be able to crystallize target proteins too large to allow direct inter-polymer contacts. (iv) Flexible TELSAM–target protein linkers can allow target proteins to find productive binding modes against the TELSAM polymer. (v) TELSAM polymers can adjust their helical rise to allow fused target proteins to make productive crystal contacts. (vi). Fusion to TELSAM polymers can stabilize weak inter-target protein crystal contacts. We report features of these TELSAM–target protein crystal structures and outline future work needed to validate TELSAM as a crystallization chaperone and determine best practices for its use.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control

Rootless plants in the genus Wolffia are some of the fastest growing known plants on Earth. Wolffia have a reduced body plan, primarily multiplying through a budding type of asexual reproduction. Here, we generated draft reference genomes for Wolffia australiana (Benth.) Hartog & Plas, which has the smallest genome size in the genus at 357 Mb and has a reduced set of predicted protein-coding genes at about 15,000. Comparison between multiple high-quality draft genome sequences from W. australiana clones confirmed loss of several hundred genes that are highly conserved among flowering plants, including genes involved in root developmental and light signaling pathways. Wolffia has also lost most of the conserved nucleotide-binding leucine-rich repeat (NLR) genes that are known to be involved in innate immunity, as well as those involved in terpene biosynthesis, while having a significant overrepresentation of genes in the sphingolipid pathways that may signify an alternative defense system. Diurnal expression analysis revealed that only 13% of Wolffia genes are expressed in a time-of-day (TOD) fashion, which is less than the typical ~40% found in several model plants under the same condition. In contrast to the model plants Arabidopsis and rice, many of the pathways associated with multicellular and developmental processes are not under TOD control in W. australiana, where genes that cycle the conditions tested predominantly have carbon processing and chloroplast-related functions. The Wolffia genome and TOD expression data set thus provide insight into the interplay between a streamlined plant body plan and optimized growth.

59 BASIC BIOLOGICAL SCIENCES↗

Workhorse minimally empirical dispersion-corrected density functional with tests for weakly bound systems: r 2 SCAN + rVV 10

SCAN+rVV10 has been demonstrated to be a versatile van der Waals (vdW) density functional that delivers good predictions of both energetic and structural properties for many types of bonding. Recently, the r 2 SCAN functional was devised as a revised form of SCAN with improved numerical stability. In this work, we refit the rVV10 functional to optimize the r 2 SCAN+rVV10 vdW density functional and test its performance for molecular interactions and layered materials. Our molecular tests demonstrate that r 2 SCAN+rVV10 outperforms its predecessor SCAN+rVV10 in both efficiency (numerical stability) and accuracy. This good performance is also found in lattice-constant predictions. In comparison with benchmark results from higher-level theories or experiments, r 2 SCAN+rVV10 yields excellent interlayer binding energies and phonon dispersions for layered materials.

36 MATERIALS SCIENCE↗

Minimal one-dimensional model of bad metal behavior from fast particle-hole scattering

A strongly interacting plasma of linearly dispersing electron and hole excitations in two spatial dimensions (2D), also known as a Dirac fluid, can be captured by relativistic hydrodynamics and shares many universal features with other quantum critical systems. Here, we propose a one-dimensional (1D) model to capture key aspects of the 2D Dirac fluid while including lattice effects and being amenable to nonperturbative computation. When interactions are added to the Dirac-like 1D dispersion without opening a gap, we show that this kind of irrelevant interaction is able to preserve Fermi-liquid-like quasiparticle features while relaxing a zero-momentum charge current via collisions between particle-hole excitations, leading to resistivity that is linear in temperature via a mechanism previously discussed for large-diameter metallic carbon nanotubes. We further provide a microscopic lattice model and obtain numerical results via density-matrix renormalization group simulations, which support the above physical picture. The limits on such fast relaxation at strong coupling are of considerable interest because of the ubiquity of bad metals in experiments.

1-dimensional systems↗

Minimally nonlocal nucleon-nucleon potentials with chiral two-pion exchange including Δ resonances

In this study, we construct a coordinate-space chiral potential, including Δ-isobar intermediate states in its two-pion-exchange component up to order Q 3 (Q denotes generically the low momentum scale). The contact interactions entering at next-to-leading and next-to-next-to-next-to-leading orders (Q 2 and Q 4 , respectively) are rearranged by Fierz transformations to yield terms at most quadratic in the relative momentum operator of the two nucleons. The low-energy constant multiplying these contact interactions are fitted to the 2013 Granada database, consisting of 2309 pp and 2982 np data (including, respectively, 148 and 218 normalizations) in the laboratory-energy range 0–300 MeV. For the total 5291 $pp$ and $np$ data in this range, we obtain a Χ 2 /datum of roughly 1.3 for a set of three models characterized by long- and short-range cutoffs, R L and R S respectively, ranging from (R L ,R S )=(1.2,0.8) fm down to (0.8,0.6) fm. The long-range (short-range) cutoff regularizes the one- and two-pion exchange (contact) part of the potential.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Minimal conditions for collectivity in e + e – and p + p collisions

Signatures of collective behavior have been measured in highly relativistic p + p collisions, as well as in p + A, d + A, and 3 He + A collisions. Numerous particle correlation measurements in these systems have been successfully described by calculations based on viscous hydrodynamic and transport models. Here, these observations raise the question of the minimum necessary conditions for a system to exhibit collectivity. Recently, numerous scientists have raised the question of whether the quarks and gluons generated in e + e - collisions may satisfy these minimum conditions. In this paper we explore possible signatures of collectivity, or lack thereof, in e + e - collisions utilizing A Multi-Phase Transport (AMPT) framework which comprises melted color strings, parton scattering, hadronization, and hadron re-scattering.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Minimal length effect on the broadening of free wave-packets and its physical implications

We study the generalized uncertainty principle (GUP) modified time evolution for the width of wave packets for a scalar potential. The free particle case is solved exactly where the wave-packet broadening is modified by a coupling between the GUP parameter and higher-order moments in the probability distribution in momentum space. We consider two popular forms of deformations widely used in the literature—one of which modifies the commutator with a quadratic term in momentum, while the other modifies it with terms both linear and quadratic in momentum. Unlike the standard case, satisfying Heisenberg uncertainty, here the GUP modified broadening rates, for both deformations, not only depend on the initial size (in both position and momentum space) of the wave packet but also on the initial probability distribution and momentum of the particle. The new rates of wave-packet broadening, for both situations, are modified by a handful of new terms—such as the skewness and kurtosis coefficients, as well as the (constant) momentum of the particle. Comparisons with the standard Heisenberg uncertainty principle–based results show potentially measurable differences in the rates of free wave-packet broadening for physical systems such as the C60 and C176 molecules, and more so for large organic molecular wave packets. In doing so, we open a path to scan the GUP parameter space by several orders of magnitude inside the best existing upper bounds for both forms of GUP.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗