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At least 1,117 records · Page 62

Omics-Lethal Human Viruses, Influenza A Experiment ICL104

The purpose of this experiment was to evaluate the host response to Influenza A pandemic wild-type H1N1 (A/California/04/2009), natural isolate virus. Sample data was obtained from human lung adenocarcinoma cells (Calu-3) with wild-type H1N1 virus (A/California/04/2009) and processed for mRNA, miRNA, proteomics, metabolomics, and lipidomics expression analysis. Secondary host-associated viral dataset downloads contain one or more statistically processed (normalization data transformation) quantitative dataset collections resulting in qualitative expression analyses of primary host-pathogen experimental study designs. Leveraging unique high-resolution Omics capabilities for proteomics, metabolomics, lipidomics, and transcriptomics dataset download each have a direct relationship to a primary sample submission corresponding to a specific Influenza A virus infection.

59 BASIC BIOLOGICAL SCIENCES↗

A global metagenomic map of urban microbiomes and antimicrobial resistance

We present a global atlas of 4,728 metagenomic samples from mass-transit systems in 60 cities over 3 years, representing the first systematic, worldwide catalog of the urban microbial ecosystem. This atlas provides an annotated, geospatial profile of microbial strains, functional characteristics, antimicrobial resistance (AMR) markers, and genetic elements, including 10,928 viruses, 1,302 bacteria, 2 archaea, and 838,532 CRISPR arrays not found in reference databases. We identified 4,246 known species of urban microorganisms and a consistent set of 31 species found in 97% of samples that were distinct from human commensal organisms. Profiles of AMR genes varied widely in type and density across cities. Cities showed distinct microbial taxonomic signatures that were driven by climate and geographic differences. These results constitute a high-resolution global metagenomic atlas that enables discovery of organisms and genes, highlights potential public health and forensic applications, and provides a culture-independent view of AMR burden in cities.

59 BASIC BIOLOGICAL SCIENCES↗

Generalized enzymatic mechanism of catalysis by tetrameric L -asparaginases from mesophilic bacteria

The mechanism of catalysis by the L -glutaminase-asparaginase from Pseudomonas 7A (PGA) was investigated using structural, mass spectrometry, and kinetic data. We had previously proposed mechanism of hydrolysis of L -Asn by the type II L-asparaginase from E. coli (EcAII), but that work was limited to just one enzyme. Based on results presented in this report, we postulate that all homotetrameric L -asparaginases from mesophilic bacteria utilize a common ping-pong mechanism of catalysis consisting of two subsequent nucleophilic substitutions. Several new structures of non-covalent complexes of PGA with different substrates, as well as structures of covalent acyl-enzyme intermediates of PGA with canonical substrates ( L -Asp and L -Glu) and an opportunistic ligand, a citrate anion, were determined. The results of kinetic experiments monitored by high-resolution LC/MS, when combined with new structural data, clearly show that the reaction catalyzed by L -glutaminase-asparaginases proceeds through formation of a covalent intermediate, as observed previously for EcAII. Additionally, by showing that the same mechanism applies to L -Asn and L -Gln, we postulate that it is common for all these structurally related enzymes.

59 BASIC BIOLOGICAL SCIENCES↗

Scintillation light in SBND: simulation, reconstruction, and expected performance of the photon detection system

SBND is the near detector of the Short-Baseline Neutrino program at Fermilab. Its location near to the Booster Neutrino Beam source and relatively large mass will allow the study of neutrino interactions on argon with unprecedented statistics. This paper describes the expected performance of the SBND photon detection system, using a simulated sample of beam neutrinos and cosmogenic particles. Its design is a dual readout concept combining a system of 120 photomultiplier tubes, used for triggering, with a system of 192 X-ARAPUCA devices, located behind the anode wire planes. Furthermore, covering the cathode plane with highly-reflective panels coated with a wavelength-shifting compound recovers part of the light emitted towards the cathode, where no optical detectors exist. We show how this new design provides a high light yield and a more uniform detection efficiency, an excellent timing resolution and an independent 3D-position reconstruction using only the scintillation light. Finally, the whole reconstruction chain is applied to recover the temporal structure of the beam spill, which is resolved with a resolution on the order of nanoseconds.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

The Jefferson Lab Eta Factory Experiment and Applications of PbWO4 Calorimeters in Future Experimental Facilities

The goal of the new JLab Eta Factory (JEF) experiment, conducted with the GlueX detector in Hall D at Jefferson Lab, is to perform measurements of various ¿(') decays with a primary focus on rare neutral modes. The experiment’s physics program ranges from precision tests of low-energy QCD to searches for gauge bosons with masses below 1 GeV that could couple the Standard Model (SM) sector to the dark sector. The experiment will collect a high-statistics data sample of ¿(') mesons produced via a beam of tagged photons. The GlueX detector features a large, nearly uniform acceptance for both neutral and charged particles, enabling efficient identification of complex multi-particle final states. To meet the requirements of the JEF experiment, the inner section of the forward lead-glass calorimeter in the GlueX detector has been upgraded with lead tungstate (PbWO4) scintillating crystals. PbWO4 offers exceptional characteristics, such as a small radiation length and Molire radius, and large light yield, that make it ideal for constructing high- granularity, high-resolution, radiation-hard detectors. These properties enable excellent spatial separation and energy resolution of reconstructed electromagnetic showers, establishing PbWO4 as the material of choice for many high-precision experiments. The JEF experiment began data collection in April 2025 and will operate concurrently with the GlueX experiment, whose primary objective is the search for gluonic excitations in the meson spectrum. I will give an overview of the JEF experiment, the GlueX detector, and the feasibility of further upgrades to support future ¿ physics studies. Special attention will be given to the newly constructed PbWO4 scintillating calorimeter and recent advancements in calorimeter instrumentation.

Somov, Alexander↗

Particle Vertical Mixing and Horizontal Conveyance Within an Ambient Temperature Fluidized Bed

Previous studies have shown the advantages of particle-to-sCO2 fluidized bed (FB) heat exchangers, which include high heat transfer coefficients, low material cost, and the ability to horizontally convey solid particles. This paper outlines the design and testing of a compact cold flow FB test apparatus to characterize horizontal conveyance through convolutions within a 100 kWth FB heat exchanger design. Horizontal conveyance is an advantage in FBs because it enables more compact designs for heat exchangers. Two mass flow rates, 0.5 & 1 kg/s, at the inlet & outlet of the FB. To determine consistency of the flow rates, Student’s t-tests were used to assess whether the inlet & outlet values were statistically similar. The mass flow rate exiting the bed was statistically similar to the flow rate entering the bed for both cases, but each case featured a wider range and standard deviation. The range and standard deviation of the 1 kg/s flow rate was 0.69-1.23 kg/s and 0.12 kg/s respectively, and the 0.5 kg/s test featured a range and standard deviation of 0.37-0.73 kg/s and 0.09 kg/s, respectively. These measurements provide confidence that large-scale designs can successfully horizontally convey particles at ````~1.5x minimum fluidization velocity (U­mf) without significant variation in flow rate. A method to characterize the degree of particle vertical mixing and bubble frequency within the FB is also introduced. By using a high-resolution camera together with particle velocimetry, particle motion in the X and Y directions can be estimated to assess bed mixing and bubble frequency.

Khalaf, Jawad↗

Degradation Diagnostics from the Subsurface of Lithium-Ion Battery Electrodes

Despite the long-established rocking-chair theory of lithium-ion batteries (LIBs), developing novel characterization methodology with higher spatiotemporal resolution facilitates a better understanding of the solid electrolyte interphase studies to shape the reaction mechanisms. In this work, we develop a Xenon ion plasma focused ion beam (Xe + PFIB)-based characterization technique to probe the cross-sectional interface of both ternary cathode and graphite anode electrodes, with the focus on revealing the chemical composition and distribution underneath the electrode surface by in-depth analysis of secondary ions. Particularly, the lithium fluoride is detected in the pristine cathode prior to contact with the electrolyte, reflecting that the electrode degradation is in the form of the loss of lithium inventory during electrode preparation. This degradation is related to the hydrolysis of the cathode material and the decomposition of the PVDF binder. Here, through the quantitative analysis of the transition-metal degradation products, manganese is found to be the dominant element in the newly formed inactive fluoride deposition on the cathode, while no transition metal signal can be found inside the anode electrode. These insights at high resolution implemented via a PFIB-based characterization technique not only enrich the understanding of the degradation mechanism in the LIBs but also identify and enable a high-sensitivity methodology to obtain the chemical survey at the subsurface, which will help remove the capacity-fade observed in most LIBs.

25 ENERGY STORAGE↗

Continental-scale integration of soil metagenomes and organic matter chemistry reveals ubiquitous microbial capacity for chemically-recalcitrant carbon decomposition

Soil organic matter (SOM) decomposition by microorganisms is a major uncertainty in predicting terrestrial carbon–atmosphere feedbacks, partly because we lack understanding of the microbial diversity involved in depolymerizing different carbon pools across environmental gradients. We address this gap using a continental-scale dataset pairing shotgun metagenomes with high-resolution SOM chemistry, assembling 0.76 Tbp of prokaryotic MAGs (828 genomes) and identifying 66,727 SOM molecules from 47 standardized U.S. soil cores selected using respiration rates from 106 soils. Integrating these datasets reveals widespread microbial potential for depolymerizing chemically-recalcitrant SOM previously considered stable. We uncover complementary metabolic specialization between genera affiliated with two abundant bacterial orders, Rhizobiales and Chthoniobacterales, and an archaeal order, Nitrososphaerales. This metabolic partitioning is consistent across soil depths and activity levels, suggesting coordinated decomposition of complex SOM through distinct but complementary biochemical strategies. The metabolic potential for depolymerization of chemically-recalcitrant compounds is supported by the abundance of these molecules across the soils, as indicated by Fourier-Transform Ion Cyclotron Resonance Mass Spectrometry (FTICR-MS), and by flux balance analysis of metabolic models. Our results show that a substantial portion of ostensibly stable SOM remains vulnerable to microbial decomposition, a mechanism not captured in current Earth System Models.

Song, Young C. [Pacific Northwest National Laborat↗

An Analytic Benchmark for Neutron Boltzmann Transport with Downscattering—Part I: Flux and Eigenvalue Solutions

Computing in the energy dimension is one of the greatest challenges confronting present-day deterministic neutron transport solvers. Accurately resolving the neutron flux as neutrons downscatter across resonances in the nuclear cross sections currently requires considerable computing power and suffers from approximation errors. Flux uncertainty resulting from the uncertainty of the resonance structure is the single-largest cause of reactivity uncertainty. Any additional reference solution for the critical neutron downscattering problem with resonance phenomena would be a boon to verification and validation of neutronics codes. This paper establishes a benchmark to verify the accuracy of neutron transport criticality solvers along the energy dimension. For the first time, the analytic solution of the flux amplitude is derived in the particular case of an infinite homogeneous medium with isotropic scattering in the center of mass and an arbitrary number of no-threshold, neutral particle reaction resonances (e.g., radiative capture, fission, and resonance scattering). Furthermore, original analytic expressions are established to quantify the discrepancy between the ψ k (E) and ψ α (E) flux amplitudes, respective solutions of the multiplication factor k, or the exponential time-evolution frequency α eigenproblems. The physical study of these relations led to analysis of their first-order relative difference near the criticality condition α=0. Finally, numerical solutions are provided to a benchmark problem constituted of the first resonance of 239 Pu, the 6.67-eV resonance of 238 U, and a scattering isotope with a flat cross section, allowing for the computational verification of the energy resolution of current neutron transport criticality codes. Through these novel results, this analytic benchmark can serve as a reference to verify the energy resolution and sensitivity analysis of neutron transport criticality calculations.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Fine scale transitions of the microbiota and metabolome along the gastrointestinal tract of herbivorous fishes

Abstract Background Gut microorganisms aid in the digestion of food by providing exogenous metabolic pathways to break down organic compounds. An integration of longitudinal microbial and chemical data is necessary to illuminate how gut microorganisms supplement the energetic and nutritional requirements of animals. Although mammalian gut systems are well-studied in this capacity, the role of microbes in the breakdown and utilization of recalcitrant marine macroalgae in herbivorous fish is relatively understudied and an emerging priority for bioproduct extraction. Here we use a comprehensive survey of the marine herbivorous fish gut microbial ecosystem via parallel 16S rRNA gene amplicon profiling (microbiota) and untargeted tandem mass spectrometry (metabolomes) to demonstrate consistent transitions among 8 gut subsections across five fish of the genus of Kyphosus . Results Integration of microbial phylogenetic and chemical diversity data reveals that microbial communities and metabolomes covaried and differentiated continuously from stomach to hindgut, with the midgut containing multiple distinct and previously uncharacterized microenvironments and a distinct hindgut community dominated by obligate anaerobes. This differentiation was driven primarily by anaerobic gut endosymbionts of the classes Bacteroidia and Clostridia changing in concert with bile acids, small peptides, and phospholipids: bile acid deconjugation associated with early midgut microbiota, small peptide production associated with midgut microbiota, and phospholipid production associated with hindgut microbiota. Conclusions The combination of microbial and untargeted metabolomic data at high spatial resolution provides a new view of the diverse fish gut microenvironment and serves as a foundation to understand functional partitioning of microbial activities that contribute to the digestion of complex macroalgae in herbivorous marine fish.

Sparagon, Wesley J. (ORCID:0000000296274174)↗

The Jefferson Lab Eta Factory (JEF) experiment

The Jefferson Lab Eta Factory (JEF) experiment is an upcoming experiment designed to run in Hall D at Jefferson Lab using an upgraded GlueX spectrometer to study various decays of the ? meson. The GlueX spectrometer consists of a ?2 Tesla solenoid magnet housing a liquid hydrogen target and drift chambers used for tracking charged particles and an array of lead glass blocks (the Forward Calorimeter (FCAL)) downstream of the magnet for detecting neutral particles. The decays of the ? meson can be used to measure the light quark mass ratio via the ???+???0 channel and allow access to higher-order terms in Chiral Perturbation Theory via the ???0?? channel. The decays can also be used to constrain new charge-conjugation violating/parity conserving (CVPC) reactions and to search for signatures of dark matter. In particular, the ???0?? channel can be used to search for lepto-phobic dark vector (B) bosons in the reaction ??B? (B??0?) or dark scalar (S) bosons in the reaction ???0S (S???). Studying the rare radiative decay channel ???0?? requires replacing the 4×4×45 cm3 lead glass blocks in the inner region of the FCAL with 2×2×20 cm3 lead tungstate crystals, which will provide twice better position and energy resolution. This talk will describe the JEF physics program and the upgrade to the FCAL.

Taylor, Simon↗

Multimodal Mass Spectrometry Imaging (MSI) of Archean and Jurassic Geologic Samples

Current geochemical analytical techniques such as gas chromatography-mass spectrometry (GC-MS and $G\acute{C}GC-MS$) can effectively determine the composition and structure of the organic biosignatures within a sample but cannot resolve the spatial distribution of organic biosignatures within rocks or sediments. The spatial distribution can be used to determine the character of the organic biosignatures [1], which can be indigenous (deposited with host rocks), non-indigenous (incorporated after deposition via fluid migration), or contaminant. Determining the character of organic biosignatures is critical for ancient samples [2] and will be critical if organics are observed in samples returned from Mars [3].Fs-LDPI-MS has the ability to map organic compounds across the surface of samples at 2 - 10 μm lateral resolution. Furthermore, fs-LDPI-MS can be used to carry out multiple analyses in the same location for micron-scale analysis of previously buried material [4]. We used fs-LDPI-MS to examine a ~164 million year old organic-rich mudstone from SW England (14.2 wt. % total organic carbon) [5] and determined the spatial distribution of likely indigenous components buried below potentially contaminated surface layers.We then used ToF-SIMS to re-analyze the mudstone to directly compare ToF-SIMS to fs-LDPI-MS datasets, and to analyze a series of ~2.7 billion year old geologic samples from Timmins, ON, CA [6]. Ref. [6] previously analyzed the Archean samples and observed a series of archaeal biomarkers, as well as hopanes and steranes. Using ToF-SIMS analysis, we were able to detect hopanes and steranes in the mudstone samples, but not in the Archean samples indicating that the hopanes and steranes are most likely contaminants in the Archean samples. We also did not observe the archaeal biomarkers; however, this may be from the lack of molecular ion preservation during ToF-SIMS.

Pasterski, Michael↗

Disc tearing leads to low and high frequency quasi-periodic oscillations in a GRMHD simulation of a thin accretion disc

Black hole X-ray binaries (BHXRBs) display a wide range of variability phenomena, from long duration spectral state changes to short-term broad-band variability and quasi-periodic oscillations (QPOs). A particularly puzzling aspect is the production of QPOs, which – if properly understood – could be used as a powerful diagnostic tool of black hole accretion and evolution. In this work, we analyse a high-resolution 3D general relativistic magnetohydrodynamic simulation of a geometrically thin accretion disc, which is tilted by 65° with respect to the black hole spin axis. We find that the Lense–Thirring torque from the rapidly spinning 10 M ⊙ black hole causes several sub-discs to tear off within ~10–20 gravitational radii. Tearing occurs in cycles on time-scales of seconds. During each tearing cycle, the inner sub-disc precesses for 1–5 periods before it falls into the black hole. We find a precession frequency of ~3 Hz, consistent with observed low-frequency QPOs. In addition, we find a high frequency QPO (HFQPO) with centroid frequency of ~55 Hz in the power spectra of the mass-weighted radius of the inner disc and the radial mass flux. This signal is caused by radial epicyclic oscillations of a dense ring of gas at the tearing radius, which suggests a corresponding modulation of the X-ray light curve and may thus explain some of the observed HFQPOs.

79 ASTRONOMY AND ASTROPHYSICS↗

Ground-based Transmission Spectroscopy with VLT FORS2: Evidence for Faculae and Clouds in the Optical Spectrum of the Warm Saturn WASP-110b

We present a ground-based optical transmission spectrum for the warm Saturn-mass exoplanet WASP-110b from two transit observations made with the FOcal Reducer and Spectrograph on the Very Large Telescope. The spectrum covers the wavelength range from 4000–8333 Å, which is binned in 46 transit depths measured to an averaged precision of 220 parts per million (ppm) over an averaged 80 Å bin for a Vmag = 12.8 star. The measured transit depths are unaffected by a dilution from a close A-type field dwarf, which was fully resolved. The overall main characteristic of the transmission spectrum is an increasing radius with wavelength and a lack of the theoretically predicted pressure-broadened sodium and potassium absorption features for a cloud-free atmosphere. We analyze archival high-resolution optical spectroscopy and find evidence for low to moderate activity of the host star, which we take into account in the atmospheric retrieval analysis. Using the AURA retrieval code, we find that the observed transmission spectrum can be best explained by a combination of unocculted stellar faculae and a cloud deck. Transmission spectra of cloud-free and hazy atmospheres are rejected at a high confidence. With a possible cloud deck at its terminator, WASP-110b joins the increasing population of irradiated hot-Jupiter exoplanets with cloudy atmospheres observed in transmission.

47 OTHER INSTRUMENTATION↗

Observing the onset of the accretion wake in Vela X-1

High-mass X-ray binaries (HMXBs) offer a unique opportunity to investigate accretion onto compact objects and the wind structure in massive stars. A key source for such studies is the bright neutron star HMXB Vela X-1 whose convenient physical and orbital parameters facilitate analyses and in particular enable studies of the wind structure in HMXBs. Here, we analyse simultaneous XMM-Newton and NuSTAR observations at $\phi_{orb}$ ≈ 0.36–0.52 and perform time-resolved spectral analysis down to the pulse period of the neutron star based on our previous NuSTAR-only results. For the first time, we are able to trace the onset of the wakes in a broad 0.5–78 keV range with a high-time resolution of ~283 s and compare our results with theoretical predictions. Here we observed a clear rise in the absorption column density of the stellar wind N H,1 starting at orbital phase ~0.44, corresponding to the wake structure entering our line of sight towards the neutron star, together with local extrema throughout the observation, which are possibly associated with clumps or other structures in the wind. Periods of high absorption reveal the presence of multiple fluorescent emission lines of highly ionised species, mainly in the soft-X-ray band between 0.5 and 4 keV, indicating photoionisation of the wind.

79 ASTRONOMY AND ASTROPHYSICS↗

Nanoscale Compositional and Strain Gradients Enable High‐Speed and Amplitude‐Resolved Pyroelectric Sensing

The frequency response of pyroelectric sensors is fundamentally governed by thermal time constant (τth, determined by thermal mass and thermal conductance) and electrical impedance arising from film capacitance and readout circuit. Conventional bulk LiTaO3 detectors are optimized for high responsivity at low modulation frequencies (0.1-10 Hz), possessing a large τth that thermally averages rapid temperature oscillations at elevated modulation frequencies, limiting fidelity in resolving dynamic varying thermal signals. Here, compositional and strain gradients are introduced into 100-nm-thick relaxor-ferroelectric films reducing τth to ≈2 µs and producing built-in potentials (≈1.45 V or 145 kV cm-1) that enhance the pyroelectric coefficient and suppress the dielectric constant. This enables complementary dual-mode operation by enhancing current-mode electrical responsivity and improving the voltage-mode figure of merit - advantageous for superior temperature resolution (ΔTmin ≈ 30 µK). The responsivity peak shifts to near 1 kHz (>2500-times higher than conventional bulk sensors), with measurable responsivity extending to a carrier frequency of 100 kHz and amplitude-resolved detection at modulation frequencies up to 15 kHz. These results establish nanoscale internal-field engineering can reshape electro-thermal trade-off in pyroelectric thin films toward zero-bias, high-thermal-sensitivity, and amplitude-resolved thermal sensing across a wide frequency bandwidth.

Lin, Ching‐Che↗

Calibration and Performance of Germanium High Voltage Detectors for SuperCDMS SNOLAB

As SuperCDMS SNOLAB is getting ready to search for low mass dark matter particles, using cryogenic Ge and Si detectors, a set of six of the new SuperCDMS High Voltage (HV) detectors (four Ge and two Si) were tested in the Cryogenic Underground TEst facility (CUTE) at SNOLAB. This provided the first opportunity to gain experience with this new detector type and assess their performance thoroughly under low background conditions. Here we describe the SuperCDMS HV detector concept and discuss some of the newly developed analysis methods and approaches. Focusing on the Ge detectors, we investigate the detector performance under voltage bias (up to 90 V), exercise the low energy (keV to sub-keV range) calibration based on the electron capture peaks generated by the decay of $^{71}$Ge, assess the detector resolution, and demonstrate the unexpected (and encouraging) ability of these detectors to also measure high energy interactions in the hundreds of keV range with good resolution (better than 3% at 356 keV).

Albakry, M. F. [British Columbia U.; TRIUMF]↗

Demonstration of neutrinoless double beta decay searches in gaseous xenon with NEXT

The NEXT experiment aims at the sensitive search of the neutrinoless double beta decay in 136 Xe, using high-pressure gas electroluminescent time projection chambers. The NEXT-White detector is the first radiopure demonstrator of this technology, operated in the Laboratorio Subterráneo de Canfranc. Achieving an energy resolution of 1% FWHM at 2.6 MeV and further background rejection by means of the topology of the reconstructed tracks, NEXT-White has been exploited beyond its original goals in order to perform a neu- trinoless double beta decay search. The analysis considers the combination of 271.6 days of 136 Xe-enriched data and 208.9 days of 136Xe-depleted data. A detailed background modeling and measurement has been developed, ensuring the time stability of the radiogenic and cosmogenic contributions across both data samples. Limits to the neutrinoless mode are obtained in two alternative analyses: a background-model-dependent approach and a novel direct background-subtraction technique, offering results with small dependence on the background model assumptions. With a fiducial mass of only 3.50 ± 0.01 kg of 136 Xe-enriched xenon, 90% C.L. lower limits to the neutrinoless double beta decay are found in the $T^{0v}_{1/2} > 5.5 \times 10^{23} - 1.3 \times 10^{24}$ yr range, depending on the method. The presented techniques stand as a proof-of-concept for the searches to be implemented with larger NEXT detectors.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗