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At least 1,117 records · Page 62

PAVplotR

PAVplotR is an R package that accepts as input a haploid VCF and, for a user-specified bin size, calculates proportional presence-absence variation (PAV). First, all variants in the file are considered to calculate an expanded coordinate system that accounts for insertions relative to the reference sequence. Next, for each sample in the VCF, proportional PAV is summarized per bin in the expanded coordinate system and finally, PAV is plotted such that rows are samples and columns are bins with the x-axis (chromosome position) labeled according to the reference haplotype's original coordinate system.

Harder, Avril↗

SCALE Input and Result Files Supporting SCALE Inventory and Reactivity Analysis as Part of the Hermes 2021 PSAR Review

This dataset contains input and result files of computational simulations with the SCALE code system. The simulations cover radionuclide inventory and reactivity analyses of a fluoride salt-cooled high temperature pebble-bed reactor (PB-FHR), specifically the Hermes low-power PB-FHR demonstration reactor. Users wanting to reproduce results from this dataset are required to obtain a license to the SCALE code system for which details on the distribution can be found here: https://www.ornl.gov/scale/releases

equilibrium core↗

SCALE Input and Result Files Supporting SCALE Inventory and Reactivity Analysis of the gFHR

This dataset contains input and result files of computational simulations with the SCALE code system. The simulations cover radionuclide inventory and reactivity analyses of a fluoride salt-cooled high temperature pebble-bed reactor (PB-FHR), specifically the generic FHR benchmark. Users wanting to reproduce results from this dataset are required to obtain a license to the SCALE code system for which details on the distribution can be found here: https://www.ornl.gov/scale/releases

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Dynamically Downscaled (WRF) 1km, Hourly Meteorological Conditions 1987-2020. East/Taylor Watersheds

This dataset contains meteorological output from the Weather Research and Forecasting (WRF) version 3.8.1. This dataset has been created to 1) investigate hydrometeorological processes impacting the East River and water-delivery to the Critical Zone, and 2) provide meteorological forcing data for distributed Earth-science modeling applications in the East River watershed. Variables have a 1 kilometer spatial resolution and hourly temporal resolution and encompass a rectangular region encompassing the East and Taylor River watersheds, Colorado, near the town of Crested Butte. WRF was forced using Climate Forecast System Reanalysis (CFSR) lateral boundary conditions. Each .zip file contains one "water year" of data (October 1 -- September 30; i.e. water year 2017 starts October 1, 2016 and ends September 30, 2017). Each zip folder contains 12 netcdf (.nc) files containing one month of hourly data each and are approximately 250mb. Model timestamps are in UTC time.The files contain the following data variables:EAST_MASK: binary mask of the watershed regionTAYLOR_MASK: binary mask of the watershed regionGLW downwelling longwave radiation (w/m2)HR_PRCP: Hourly Precipitation Rate (mm/hr). Includes all hydrometeors (solid+liquid). HFX NoahMP LSM total grid-cell modelled sensible heat flux (w/m2) [positive towards atmosphere]LH NoahMP LSM total grid-cell modelled latent heat flux (w/m2) [positive towards atmosphere; can be converted to ET]PSFC Surface Barometric Pressure (hPa)Q2 Two-meter specific humidity (kg/kg)SWDOWN Downwelling shortwave solar radiation (w/m2)SWNORM Terrain-normal downwelling shortwave radiation (w/m2)T2 Two-meter air temperature (deg K)U10 10-m U-component of wind velocity (m/s)V10 10m V-component of wind velocity (m/s)XLAT Latitude of grid-center point XLONG Longitude of grid-center point XTIME Model timestamp, **in UTC**

54 ENVIRONMENTAL SCIENCES↗

CHESS 2025: Location data for field observations and sampling

This dataset represents geolocation data associated with field observations and sampling from the Colorado Headwaters Ecological Spectroscopy Study (CHESS) during June and July of 2025. Location data were collected using Trimble DA2 Global Navigation Satellite System (GNSS) receivers with Trimble Catalyst 2 centimeter (cm) positioning service and the Environmental Systems Research Institute (Esri) Field Maps mobile app. Files in this data package include meadow site polygons, shrub site polygons, tree site polygons and stem point locations, and Leaf Area Index (LAI) plot polygons (.geojson). The geojson files can be opened with open-source GIS software (e.g, QGIS). A csv file is also provided with point coordinates for all locations. CHESS Project Description: The Colorado Headwaters Ecological Spectroscopy Study (CHESS) comprised a multi-week airborne remote sensing and field observation campaign in the Upper Gunnison Basin, Colorado, conducted in June and July of 2025. Airborne remote sensing was conducted by the National Ecological Observatory Network Airborne Observation Platform (NEON AOP), concurrent with a field campaign run by the Rocky Mountain Biological Laboratory (RMBL), the Lawrence Berkeley National Laboratory (LBNL) and SLAC National Accelerator Laboratory Watershed Function Science Focus Area (SFA), and NASA-JPL (Jet Propulsion Laboratory) Earth Surface Mineral Dust Source Investigation (EMIT) program. Between June 10 and July 18, 2025, the NEON AOP flight team collected high-resolution aerial imaging spectroscopy and Light Detection and Ranging (LiDAR) data over three domains: the Upper East River (CRBU), Almont Triangle (ALMO), and the Upper Taylor Basin (UPTA). In coordination with the flights, a field campaign acquired ground-truth observations, including observations of vegetation composition, foliar traits, forest demography, and subsurface properties in 18 core sampling areas within the domains. Additional surface water observations were taken at over 380 point locations. All CHESS campaign datasets can be found within the CHESS ESS-DIVE data portal: https://data.ess-dive.lbl.gov/portals/chess. Funding Acknowledgment: Field and remote-sensing data acquisition was performed under a grant from the National Aeronautics and Space Administration (80NSSC24K1005). This work was also supported by the Watershed Function Science Focus Area at Lawrence Berkeley National Laboratory funded by the US Department of Energy, Office of Science, Biological and Environmental Research under Contract No. DE-AC02-05CH11231.

2018 NEON and 2025 CHESS Campaigns↗

SRNL Analysis of ICCWR LCM and WAMS data for Corrosion and Cracking (FY2020 Progress Report)

The development of algorithms for machine learning and data analysis for the 3013 Surveillance Program is a collaborative effort by the Savannah River National Laboratory (SRNL) and the University of South Carolina (USC). For corrosion detection, Laser Confocal Microscope (LCM) or Wide Area 3D Measurement System (WAMS) data is extracted from large binary files, with software written to convert the data to physical attributes (e.g. height, color and grayscale values; all as functions of a location in a plane projection). It is the objective of this project to produce a user-friendly interface that incorporated all operations needed to perform surface examination. For this reason, a Matlab-based Graphical User Interface (GUI) was created to integrate data input with software developed for processing and evaluation. In summary, the GUI permits selective downloading of binary data, interrogation of attributes, data labeling, flagging of significant features, execution of Machine Learning (ML) algorithms, output of parameters for trained ML algorithms, reports of ML model accuracy with respect to labeled data, and generation of graphical representations of various analyses.

3013 corrosion↗

FY21 Progress Report: SRNL Analysis of ICCWR LCM and WAMS data for Corrosion and Cracking

The development of algorithms for machine learning and data analysis for the 3013 Surveillance Program is a collaborative effort by the Savannah River National Laboratory (SRNL) and the University of South Carolina (USC). For corrosion detection, Laser Confocal Microscope (LCM) or Wide Area 3D Measurement System (WAMS) data is extracted from large binary files, with software written to convert the data to physical attributes (e.g., height, color and grayscale values; all as functions of a location in a plane projection). A user-friendly Matlab Graphical User Interface (GUI) that reads data from either LCM or WAMS files was developed to integrate input data with software developed for processing and evaluation. The GUI can selectively download binary data, interrogate data attributes, label data, flag significant features, execute Machine Learning (ML) algorithms, output parameters for trained ML algorithms, report ML model accuracy with respect to labeled data, and generate graphical representations for various analyses. Features can be called out by user-specified thresholds, manual labeling or machine learning algorithms when they have been completed. The ability to rapidly label data is important because of the volume of data required for training machine learning algorithms. The GUI has the flexibility to allow addition of improved ML algorithms, methods for data visualization, and statistical computations. Statistical analyses via the GUI include areas of pits within a defined range of pit depths, correlations between Red-Green-Blue (RGB) or grayscale intensity and relative surface height, covariances between values associated with features, and feature histograms. The development of supervised machine learning algorithms, however, has been hindered by a lack of training data. The machine learning algorithms for crack identification are being refined but require improvements to the true positive rate for crack detection. This shortcoming is an artifact of the limited training data currently available, perhaps more so than the structure of the neural networks. At present, the best results are had from a consensus over an ensemble of randomly generated Deep Neural Network (DNN) or Convolutional Neural Network (CNN) algorithms. Although the consensus accuracy method has yielded optimum true positive and true negative rates in excess of 80%, additional validation testing is necessary. In addition to the suite of LCM data that was initially used, and which represents the majority of the work presented in this report, WAMS image data was also reviewed at a preliminary level. The review included a comparison between image resolution and dynamic range for each method. WAMS (ZON file) image data was found to have a pixel pitch of 3.69μm compared to 1 μm for the LCM (vk4 file) data, which implies a lower resolution for the WAMS images. Conversely, the ratio of dynamic range of the WAMS data to the LCM data was approximately 41:20 for height data, suggesting that information from WAMS should more accurately determine the depth of pits. At present, the significance of the greater dynamic range of the WAMS data relative to the LCM data has not yet been evaluated.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

SPAR data set contents

The contents of the stored data sets of the SPAR (space processing applications rocket) finite element structural analysis system are documented. The data generated by each of the system's processors are stored in a data file organized as a library. Each data set, containing a two-dimensional table or matrix, is identified by a four-word name listed in a table of contents. The creating SPAR processor, number of rows and columns, and definitions of each of the data items are listed for each data set. An example SPAR problem using these data sets is also presented.

Cunningham, S. W.↗

LANDSAT instruments characterization

Work performed for the LANDSAT instrument characterization task in the areas of absolute radiometry, coherent noise analysis, and between-date smoothing is reported. Absolute radiometric calibration for LANDSAT-5 TM under ambient conditions was performed. The TM Radiometric Algorithms and Performance Program (TRAPP) was modified to create optional midscan data files and to match the TM Image Processing System (TIPS) algorithm for pulse determination. Several data reduction programs were developed, including a linear regression and its plotted result. A fast Fourier transformation study was conducted on the resequenced TM data. Subscenes of homogeneous water within scenes over Pensacola, Florida were used for testing the FFT on the resequenced data. Finally, a gain and pulse height stability study of LANDSAT 5 TM spectral bands was performed.

Lee, Y.↗

An interactive wire-wrap board layout program

An interactive computer-graphics-based tool for specifying the placement of electronic parts on a wire-wrap circuit board is presented. Input is a data file (currently produced by a commercial logic design system) which describes the parts used and their interconnections. Output includes printed reports describing the parts and wire paths, parts counts, placement lists, board drawing, and a tape to send to the wire-wrap vendor. The program should reduce the engineer's layout time by a factor of 3 to 5 as compared to manual methods.

Schlutsmeyer, A.↗

Archetyping: A software generation and management methodology

Many knowledge based software generation methods have been proposed to improve software quality and programmer productivity. Several government and industry initiatives have focused on software reusability as one solution to these problems. DARTS (trademark), a General Dynamics proprietary symbolic processing technology, provides a unique solution to the reuse problem: archtyping. Archtyping is the embedding of high order language statements in text files. An advanced macroprocessor uses the text files to generate new versions of complex software systems. A DARTS program, the Software Generation and Configuration Management (SGCM) System automates the archtyping process and maintenance cycle. The DARTS technology is briefly discussed, archtyping is described, and the SGCM system is presented in detail.

Rothman, Hugh B.↗

OMV mission simulator

The Orbital Maneuvering Vehicle (OMV) will be remotely piloted during rendezvous, docking, or proximity operations with target spacecraft from a ground control console (GCC). The real-time mission simulator and graphics being used to design a console pilot-machine interface are discussed. A real-time orbital dynamics simulator drives the visual displays. The dynamics simulator includes a J2 oblate earth gravity model and a generalized 1962 rotating atmospheric and drag model. The simulator also provides a variable-length communication delay to represent use of the Tracking and Data Relay Satellite System (TDRSS) and NASA Communications (NASCOM). Input parameter files determine the graphics display. This feature allows rapid prototyping since displays can be easily modified from pilot recommendations. A series of pilot reviews are being held to determine an effective pilot-machine interface. Pilots fly missions with nominal to 3-sigma dispersions in translational or rotational axes. Console dimensions, switch type and layout, hand controllers, and graphic interfaces are evaluated by the pilots and the GCC simulator is modified for subsequent runs. Initial results indicate a pilot preference for analog versus digital displays and for two 3-degree-of-freedom hand controllers.

Cok, Keith E.↗

Development of a prototype spatial information processing system for hydrologic research

Significant advances have been made in the last decade in the areas of Geographic Information Systems (GIS) and spatial analysis technology, both in hardware and software. Science user requirements are so problem specific that currently no single system can satisfy all of the needs. The work presented here forms part of a conceptual framework for an all-encompassing science-user workstation system. While definition and development of the system as a whole will take several years, it is intended that small scale projects such as the current work will address some of the more short term needs. Such projects can provide a quick mechanism to integrate tools into the workstation environment forming a larger, more complete hydrologic analysis platform. Described here are two components that are very important to the practical use of remote sensing and digital map data in hydrology. Described here is a graph-theoretic technique to rasterize elevation contour maps. Also described is a system to manipulate synthetic aperture radar (SAR) data files and extract soil moisture data.

Sircar, Jayanta K.↗

Image tools for UNIX

This talk features two simple and useful tools for digital image processing in the UNIX environment. They are xv and pbmplus. The xv image viewer which runs under the X window system reads images in a number of different file formats and writes them out in different formats. The view area supports a pop-up control panel. The 'algorithms' menu lets you blur an image. The xv control panel also activates the color editor which displays the image's color map (if one exists). The xv image viewer is available through the internet. The pbmplus package is a set of tools designed to perform image processing from within a UNIX shell. The acronym 'pbm' stands for portable bit map. Like xv, the pbm plus tool can convert images from and to many different file formats. The source code and manual pages for pbmplus are also available through the internet. This software is in the public domain.

Banks, David C.↗

BOREAS TE-10 Leaf Gas Exchange Data

The Boreal Ecosystem-Atmospheric Study (BOREAS) TE-10 (Terrestrial Ecology) team collected several data sets in support of its efforts to characterize and interpret information on the reflectance, transmittance, gas exchange, chlorophyll content, carbon content, hydrogen content, and nitrogen content of boreal vegetation. This data set contains measurements of assimilation, stomatal conductance, transpiration, internal CO2 concentration, and water use efficiency conducted in the Southern Study Area (SSA) during the growing seasons of 1994 and 1996 using a portable gas exchange system. The data are stored in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC).

Hall, Forrest G.↗

BOREAS TE-12 Leaf Gas Exchange Data

The BOREAS TE-12 team collected several data sets in support of its efforts to characterize and interpret information on the reflectance, transmittance, and gas exchange of boreal vegetation. This data set contains measurements of leaf gas exchange conducted in the SSA during the growing seasons of 1994 and 1995 using a portable gas exchange system. The data are stored in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Active Center (DAAC).

Hall, Forrest G.↗

BOREAS TF-11 SSA-Fen Leaf Gas Exchange Data

The BOREAS TF-11 team gathered a variety of data to complement its tower flux measurements collected at the SSA-Fen site. This data set contains single-leaf gas exchange data from the SSA-Fen site during 1994 and 1995. These leaf gas exchange properties were measured for the dominant vascular plants using portable gas exchange systems. The data are stored in tabular ASCII files.

Arkebauer, Timothy J.↗