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The purpose of this CRADA is to combine industrial expertise in wood pulping with national laboratory expertise in high-performance computer simulation to gain fundamental understanding of softwood pretreatment required to improve the efficiency of kraft pulping.
Cloud computing has the potential to bring high performance computing capabilities to the average science researcher. However, in order to take full advantage of cloud capabilities, the science data used in the analysis must often be reorganized. This typically involves sharding the data across multiple nodes to enable relatively fine-grained parallelism. This can be either via cloud-based file systems or cloud-enabled databases such as Cassandra, Rasdaman or SciDB. Since storing an extra copy of data leads to increased cost and data management complexity, NASA is interested in determining the benefits and costs of various cloud analytics methods for real Earth Observation cases. Accordingly, NASA's Earth Science Technology Office and Earth Science Data and Information Systems project have teamed with cloud analytics practitioners to run a benchmark comparison on cloud analytics methods using the same input data and analysis algorithms. We have particularly looked at analysis algorithms that work over long time series, because these are particularly intractable for many Earth Observation datasets which typically store data with one or just a few time steps per file. This post will present side-by-side cost and performance results for several common Earth observation analysis operations.
The rapid introduction of mobile navigation aides that use real-time road network information to suggest alternate routes to drivers is making it more difficult for researchers and government transportation agencies to understand and predict the dynamics of congested transportation systems. Computer simulation is a key capability for these organizations to analyze hypothetical scenarios; however, the complexity of transportation systems makes it challenging for them to simulate very large geographical regions, such as multi-city metropolitan areas. In this article, we describe enhancements to the Mobiliti parallel traffic simulator to model dynamic rerouting behavior with the addition of vehicle controller actors and vehicle-to-controller reroute requests. The simulator is designed to support distributed-memory parallel execution using discrete event simulation and be scalable on high-performance computing platforms. We demonstrate the potential of the simulator by analyzing the impact of varying the population penetration rate of dynamic rerouting on the San Francisco Bay Area road network. Using high-performance parallel computing, we can simulate a day in the San Francisco Bay Area with 19 million vehicle trips with 50 percent dynamic rerouting penetration over a road network with 0.5 million nodes and 1 million links in less than three minutes. We present a sensitivity study on the dynamic rerouting parameters, discuss the simulator’s parallel scalability, and analyze system-level impacts of changing the dynamic rerouting penetration. Furthermore, we examine the varying effects on different functional classes and geographical regions and present a validation of the simulation results compared to real-world data.
Nuclear fuel performance computer codes have been developed over the last 50 years to analyze fuel behavior under various operating conditions. Traditionally, these codes used quasi-two-dimensional (also commonly known as 1.5D) representations of the fuel rod, which model the rod using a set of one-dimensional axisymmetric models that represent the behavior at specific axial positions on the rod. Modern fuel performance codes have the ability to investigate full three-dimensional (3D) effects and couple to other physics-based codes for true multiphysics simulations. However, with increasing complexity comes increasing computational costs. Many phenomena of interest involve azimuthally-varying behavior that cannot be represented using the aforementioned quasi-two-dimensional approach, but do not require the use of a full 3D model. To efficiently address these problems, there is a need for a computational framework that provides a compromise between the quasi-two-dimensional and full 3D models. In this paper, we present a new quasi-three-dimensional approach that represents the fuel as a set of 2D planar models that represent the behavior of the fuel cross-section at various axial positions. Presented here are the theory behind the methodology, test cases to illustrate proper implementation, and practical applications of its use in the BISON fuel performance code for a variety of cases in nuclear fuel analysis, such as fuel fracture, axial fuel relocation, and cladding distension and oxidation.
The trends in high performance computing, where far more data can be computed that can ever be stored, have made in situ techniques an important area of research and development. Simulation campaigns, where domain scientists work with computer scientists to run a simulation and perform in situ analysis and visualization are important, and complex undertakings. In this paper we report our experiences performing in situ analysis and visualization on two campaigns. The two campaigns were related, but had important differences in terms of the codes that were used, the types of analysis and visualization required, and the visualization tools used. Further, we report the lessons learned from each campaign.
Coupled fire-atmospheric modeling tools are increasingly used to understand the complex and dynamic behavior of wildland fires. Multiple research tools linking combustion to fluid flow use Navier-Stokes numerical solutions coupled to a thermodynamic model to understand fire-atmospheric feedbacks, but these computational fluid dynamics approaches require high-performance computing resources. We present a new simulation tool called QUIC-Fire to rapidly solve these feedbacks by coupling the mature 3-D rapid wind solver QUIC-URB to a physics-based cellular automata fire spread model Fire-CA. QUIC-Fire uses 3-D fuels inputs similar to the CFD model FIRETEC, allowing this tool to simulate effects of fuel structure on local winds and fire behavior. Results comparing fire behavior metrics to the computational fluid dynamic model FIRETEC show strong agreement. As a result, QUIC-Fire is the first tool intended to provide an opportunity for prescribed fire planners to compare, evaluate and design burn plans, including complex ignition patterns and coupled fire atmospheric feedbacks.
There are pressing problems with traditional computing, especially for accomplishing data-intensive and real-time tasks, that motivate the development of in-memory computing devices to both store information and perform computation. Magnetic tunnel junction memory elements can be used for computation by manipulating a domain wall, a transition region between magnetic domains, but the experimental study of such devices has been limited by high current densities and low tunnel magnetoresistance. Here, we study prototypes of three-terminal domain wall-magnetic tunnel junction in-memory computing devices that can address data processing bottlenecks and resolve these challenges by using perpendicular magnetic anisotropy, spin–orbit torque switching, and an optimized lithography process to produce average device tunnel magnetoresistance TMR = 171% and average resistance-area product RA = 29 Ω μm2, close to the RA of the unpatterned film. Device initialization variation in switching voltage is shown to be curtailed to 7%–10% by controlling the domain wall initial position, which we show corresponds to 90%–96% accuracy in a domain wall-magnetic tunnel junction full adder simulation. Repeatability of writing and resetting the device is shown. A circuit shows an inverter operation between two devices, showing that a voltage window is large enough, compared to the variation noise, to repeatably operate a domain wall-magnetic tunnel junction circuit. These results make strides in using magnetic tunnel junctions and domain walls for in-memory and neuromorphic computing applications.
The higher energy and luminosity from the LHC in Run2 has put increased pressure on CMS computing resources. Extrapolating to even higher luminosities (and thus higher event complexities and trigger rates) in Run3 and beyond, it becomes clear the current model of CMS computing alone will not scale accordingly. High Performance Computing (HPC) facilities, widely used in scientific computing outside of HEP, present a (at least so far) largely untapped computing resource for CMS. Even just being able use a small fraction of HPC facilities computing resources could significantly increase the overall computing available to CMS. Here we describe the CMS strategy for integrating HPC resources into CMS computing, the unique challenges these facilities present, and how we plan on overcoming these challenges. We also present the current status of ongoing CMS efforts at HPC sites such as NERSC (Cori cluster), SDSC (Comet cluster) and TACC (Stampede cluster).
The analysis of vast amounts of data and the processing of complex computational jobs have traditionally relied upon high performance computing (HPC) systems, which offer reliable and efficient management of large-scale computational and data resources. Understanding these analyses’ needs is paramount for designing solutions that can lead to better science, and similarly, understanding the characteristics of the user behavior on those systems is important for improving user experiences on HPC systems. A common approach to gathering data about user behavior is to extract workload characteristics from system log data available only to system administrators. Recently at Oak Ridge Leadership Computing Facility (OLCF), however, we unveiled user behavior about the Summit supercomputer by collecting data from a user’s point of view with ordinary Unix commands.In this paper, we discuss the process, challenges, and lessons learned while preparing this dataset for publication and submission to an open data challenge. The original dataset contains personal identifiable information (PII) about the users of OLCF which needed be masked prior to publication, and we determined that anonymization, which scrubs PII completely, destroyed too much of the structure of the data to be interesting for the data challenge. We instead chose to pseudonymize the dataset, which reduced the linkability of the dataset to the users’ identities. Pseudonymization is significantly more computationally expensive than anonymization, and the size of our dataset, which is approximately 175 million lines of raw text, necessitated the development of a parallelized workflow that could be reused on different HPC machines. We demonstrate the scaling behavior of the workflow on two leadership class HPC systems at OLCF, and we show that we were able to bring the overall makespan time from an impractical 20+ hours on a single node down to around 2 hours. As a result of this work, we release the entire pseudonymized dataset and make the workflows and source code publicly available.
NREL's computational sciences center hosts the largest high performance computing (HPC) capabilities dedicated to energy research while functioning as a living laboratory for energy-efficient computing. NREL's HPC capabilities support the research needs of the Department of Energy's Office of Energy Efficiency and Renewable Energy (EERE). In ten years of operation, HPC use in EERE-sponsored research has grown by a factor of 30, including work in electricity generation, energy efficiency, transportation, and energy system modeling. This paper analyzes this research portfolio, providing examples of individual use cases. The paper documents NREL's history of operating one of the world's most energy-efficient data centers while examining pathways to reduce economic and environmental impact beyond reduction of Power Usage Efficiency (PUE). This paper concludes by examining the unique opportunities created for accelerating improvements in data center efficiency created by combining an HPC system dedicated to energy research and a research program in energy-efficient computing.
Hosting capacity is an indication of the amount of solar photovoltaics (PV) that can be hosted in a distribution system without additional changes to infrastructure or oper-ations. This paper presents a framework for estimating the PV hosting capacity at scale. First, we analyze computational, modeling and other key challenges of performing relevant, large-scale simulations, provided along with the experiences and lessons learned. Then, we develop two open-source Python-based software tools to conduct repeatable distribution analyses: the Distribution Integration Solution Cost Options (DISCO) for configuring and analyzing simulations and the Job Automation and Deployment Engine (JADE) for parallelizing jobs on high-performance computing clusters. A case study of hosting capacity estimation for the SMART-DS San Francisco (SFO) 2000+ synthetic feeders, is used to demonstrate the capability of the developed DISCO+JADE framework and tools. The framework and tools can help utilities assess the overall hosting capacity of their service territory, which can help them better plan for the overall upgrade costs to integrate more PV in the future. The experiences are shared to aid the tool users and researchers to conduct relevant studies and research.
Tigres provides a programming library to compose and execute large-scale data-intensive scientific workflows from desktops to supercomputers. DOE User Facilities and large science collaborations are increasingly generating large enough data sets that it is no longer practical to download them to a desktop to operate on them. They are instead stored at centralized compute and storage resources such as high performance computing (HPC) centers. Analysis of this data requires an ability to run on these facilities, but with current technologies, scaling an analysis to an HPC center and to a large data set is difficult even for experts. Tigres is addressing the challenge of enabling collaborative analysis of DOE Science data through a new concept of reusable "templates" that enable scientists to easily compose, run and manage collaborative computational tasks. These templates define common computation patterns used in analyzing a data set.
Historically, scientific computing efforts have demonstrated the clear need for, and effective use of, supercomputing with traditional time-stepped simulations. Nevertheless, there are several areas in the mission spaces of the U.S. Department of Energy and other agencies waiting to tap advanced computing research using a different, discrete event style of modeling, simulation, and analysis. These span a wide spectrum of applications including energy grid resilience, urban planning and policy, transportation science, building technologies, emergency response and planning, environmental impact analysis, computational epidemiology, Internet communications, cyber security, and cyber-physical systems, to name only a few. Even within traditional scientific applications, the role of discrete event modes of execution is increasing in the form of new event-based mathematical solvers such as quantized state integration methods and discrete-continuous hybrid system solvers. Co-design of advanced supercomputing hardware systems is another area that exploits discrete event simulation at its core for effective analyses. Complex systems, entity behaviors and interconnections play a significant role in all these applications, which are mapped to large-scale models with discrete event formulations. To make advancements in all the aforementioned scientific areas, many technical aspects need to be more thoroughly studied and deeply understood in parallel discrete event simulation (PDES). The unique dynamics inherent in a discrete event modeling approach, by their very nature, intersect and influence the entire stack of the computing system, including (a) the unique nature of the instruction sets exercised in PDES workloads without a predominance of high-precision floating point operations, (b) virtual time-constrained multi-threaded execution of many logical processes per processor, (c) extremely variable and difficult to predict network traffic characteristics, (d) interfaces and inter-dependencies with machine learning and artificial intelligence codes at higher software layers, and (e) highly challenging load balancing needs, especially in effectively accounting for accelerated/extremely heterogeneous computing in current and future high-performance computing systems. Efficient and accurate parallel execution of PDES workloads is also dominated by challenges in dealing with their asynchronous concurrency fundamentally present at the model level. Conservative synchronization, optimistic/speculative synchronization, and their hybrid schemes open new questions in fundamental computer science with respect to reversibility of computation and prediction (lookahead) of behaviors inherent within model codes. On the implementation front, there are relatively few scalable, general-purpose parallel discrete event simulators in the world, and even fewer have been studied on emerging hardware platforms. To enable scientific advances using PDES, the research needs in computer science must also be pursued and met in the intersection of the algorithmic and hardware-aware aspects of scalable PDES engines. This report is aimed at capturing a computer science-oriented view of this important area of research in PDES, presenting a sample of important applications with their inherent discrete event technology elements. Needs are outlined in core areas of parallel discrete event research as well as cross-cutting directions in computer science research that positively impact scientific advancements across several important application areas. A selection of priority research opportunities in advanced computing for PDES is identified to serve as reference for key research topics and their order of importance for scientific advancements.
Fueled by exponential increases in the computational and storage capabilities of high-performance computing platforms, climate simulations are evolving toward higher numerical fidelity, complexity, volume, and dimensionality. These technological breakthroughs are coming at a time of exponential growth in climate data, with estimates of hundreds of exabytes by 2020. To meet the challenges and exploit the opportunities that such explosive growth affords, a consortium of four national laboratories, two universities, a government agency, and two private companies formed to explore the next wave in climate science. Working in close collaboration with domain experts, the Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT) project aims to provide high-level solutions to a variety of climate data analysis and visualization problems.
The use of luminescent coatings for the global measurement of surface aerodynamic properties at full-flight Reynolds numbers has been ongoing at the NASA Langley Research Center since the late 1990s, beginning with Temperature Sensitive Paint (TSP) for boundary layer analysis at the 0.3-m Transonic Cryogenics Tunnel. Since then, significant work has been made to extend these measurements to pressure using Pressure Sensitive Paint (PSP) as well as develop systems for application in larger scale, full-flight Reynolds number facilities, such as the National Transonic Facility (NTF). Recently, a system for the measurement of time-resolved pressure using recently developed unsteady PSP (uPSP) formulations has been designed and implemented in the Transonic Dynamics Tunnel (TDT). The use of PSP (or uPSP) in either of these large scale, full-fight Reynolds number wind tunnels is complicated by the fact that both facilities operate best in oxygen deficient environments; however, the PSP technique relies on the presence of oxygen to work. The NTF is typically operated in cryogenic conditions, which is achieved using liquid nitrogen. In this facility, temperatures can reach as low as 116 K (-250 °F) with nominal oxygen concentrations of less than 50 ppm. This has resulted in the development of specialized PSP formulations that can operate in the cryogenic environment with the introduction of low amounts of oxygen (typically less than 2000 ppm) for PSP response. Likewise, to achieve full-flight Reynolds number conditions in the TDT, the atmosphere in the tunnel is replaced with a “heavy gas” of R-134A (1,1,1,2-tetrafluoroethane), which also has minimal oxygen native in the flow. The use of uPSP in this case will also depend on the introduction of trace amounts of oxygen, with the precise concentrations to be determined in an upcoming test. This presentation will describe some recent advancements that have been made for PSP measurements in both facilities. For the NTF system, there has been significant development of enhanced lighting for use at cryogenic conditions, as well as improvements in the application efficiency of the PSP. Furthermore, there are efforts underway to incorporate advanced data analysis techniques to acquire additional surface aerodynamic properties using the PSP technique that can yield not only improved experimental efficiency, but also provide data needed for next generation vehicle design and development. For the uPSP system in TDT, significant efforts to improve the data transfer rates to a high-performance computing environment for analysis are underway and performance and initial results from the system in the heavy-gas environment will be presented.
Sustainable and effective computing infrastructure depends critically on the skills and expertise of domain scientists and of committed and well-trained advanced computing professionals. But, in its ongoing High Performance Computing (HPC) work, Los Alamos National Laboratory noted a persistent shortage of well-prepared applicants, particularly for entry-level cluster administration, file systems administration, and high speed networking positions. Further, based upon recruiting efforts and interactions with universities graduating students in related majors of interest (e.g., computer science (CS)), there has been a long standing skillset gap, as focused training in HPC topics is typically lacking or absent in undergraduate and in even many graduate programs. Given that the effective operation and use of HPC systems requires specialized and often advanced training, that there is a recognized HPC skillset gap, and that there is intense global competition for computing and computational science talent, there is a long-standing and critical need for innovative approaches to help bridge the gap and create a well-prepared, next generation HPC workforce. Our paper places this need in the context of the HPC work and workforce requirements at Los Alamos National Laboratory (LANL) and presents one such innovative program conceived to address the need, bridge the gap, and grow an HPC workforce pipeline at LANL. The Computer System, Cluster, and Networking Summer Institute (CSCNSI) completed its 10th year in 2016. The story of the CSCNSI and its evolution is detailed below with a description of the design of its Boot Camp, and a summary of its success and some key factors that have enabled that success.
The FabrIc for Frontier Experiments (FIFE) project within the Fermilab Scientific Computing Division is charged with integrating offline computing components into a common computing stack for the non-LHC Fermilab experiments, supporting experiment offline computing, and consulting on new, novel workflows. We will discuss the general FIFE onboarding strategy, the upgrades and enhancements in the FIFE toolset, and plans for the coming year. These enhancements include: expansion of opportunistic computing resources (including GPU and high-performance computing resources) available to experiments; assistance with commissioning computing resources at European sites for individual experiments; StashCache repositories for experiments; enhanced job monitoring tools; and a custom workflow management service. Additionally we have completed the first phase of a Federated Identity Management system to make it easier for FIFE users to access Fermilab computing resources.
HEP data-processing software must support the disparate physics needs of many experiments. For both collider and neutrino environments, HEP experiments typically use data-processing frameworks to manage the computational complexities of their large-scale data processing needs. Data-processing frameworks are being faced with new challenges this decade. The computing landscape has changed from the past three decades of homogeneous single-core x86 batch jobs running on grid sites. Frameworks must now work on a heterogeneous mixture of different platforms: multi-core machines, different CPU architectures, and computational accelerators; and different computing sites: grid, cloud, and high-performance computing. We describe these challenges in more detail and how frameworks may confront them. Given their historic success, frameworks will continue to be critical software systems that enable HEP experiments to meet their computing needs. Frameworks have weathered computing revolutions in the past; they will do so again with support from the HEP community