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At least 1,099 records · Page 61
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Pangenomics reveals alternative environmental lifestyles among chlamydiae

Chlamydiae are highly successful strictly intracellular bacteria associated with diverse eukaryotic hosts. Here we analyzed metagenome-assembled genomes of the “Genomes from Earth’s Microbiomes” initiative from diverse environmental samples, which almost double the known phylogenetic diversity of the phylum and facilitate a highly resolved view at the chlamydial pangenome. Chlamydiae are defined by a relatively large core genome indicative of an intracellular lifestyle, and a highly dynamic accessory genome of environmental lineages. We observe chlamydial lineages that encode enzymes of the reductive tricarboxylic acid cycle and for light-driven ATP synthesis. We show a widespread potential for anaerobic energy generation through pyruvate fermentation or the arginine deiminase pathway, and we add lineages capable of molecular hydrogen production. Genome-informed analysis of environmental distribution revealed lineage-specific niches and a high abundance of chlamydiae in some habitats. Together, our data provide an extended perspective of the variability of chlamydial biology and the ecology of this phylum of intracellular microbes.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Climate-Related Trends of Within-Storm Intensities Using Dimensionless Temporal-Storm Distributions

Huff curves are probabilistic time distributions of rainfall expressed as dimensionless cumulative percentages of storm depth and duration. Previous studies have documented development factors, spatial robustness, and the utility of Huff curves in practical applications. However, the effects of trending rainfall on Huff curve intensity patterns have not yet been studied. As such, the goal of this paper is to fill this gap by studying Huff curve patterns in a watershed with demonstrated increasing trends of temperature and precipitation, with the intention that it can be generalized to other areas in the US and the world. To achieve this goal, the high temporal resolution precipitation data collected from a high spatial density, 72-year precipitation-gauge network on the 4.25-km 2 North Appalachian Experimental Watershed in east-central Ohio were used. Seasonal storm pattern trends from 1939 to 2010 were investigated using dimensionless depth (with the frequency of 50%, $d_{50}$) and the curve variability $(V = d_{80} - d_{20})$ at three dimensionless within-storms time periods (three verticals). The Spearman rank correlation procedure (correlation coefficient, ρ and significance probability, p) was used to statistically determine trends over time using 8 periods of 4-season sets of Huff curves over the 72 years. Two averages of ρ and p were computed: (1) by averaging the individual ρ and p obtained from 10 gauges (AvgI); and (2) by grouped averaging of all individual gauge values of $d_{50}$ and V and then computing ρ and p (AvgG). The test results of individual gauges showed that 4 cases for $d_{50}$ and 23 cases for V were significant for all seasons and verticals (total of 120 cases for each variable). The test results of AvgI for $d_{50}$ and V and AvgG for $d_{50}$ showed no significant trends in all seasons and verticals. Only the AvgG for V led to a significant trend for V in spring and fall at different times within storm patterns. The data do not provide sufficient evidence at the p=0.05 significance level to reject the null hypothesis of unchanging position of the dimensionless depth of the 50% Huff curves for individual or averages for all seasons and verticals. Also, there is insufficient evidence to reject the null hypothesis of unchanging variability, V, using the average ρ of individual gauges (AvgI for V) for all seasons and verticals. AvgG results showed a significant trend in V; however, this analysis may be affected by the nonindependence of storm data. The results suggest that it is likely that there is little if any effect of trending climate over approximately 70 years on Huff curve patterns. The results of this study add to the robustness characteristics of Huff curves and to their potential use in hydrological practice as design storms, as the foundation of stochastic storm generation, and for storm disaggregation, and they deserve further investigation. These different forms of inputs to watershed models have the potential to improve runoff estimation. The results suggest that, if verified in other studies, they have applicability to provide useful stationary precipitation patterns across the US and other areas of the world in areas of nonstationary climate. Also, individual rain gauge data may not be representative of trends even over small areas, and seasonal differences were noticeable as found in other studies. Recommendations are provided.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Quantum Chemistry Common Driver and Databases (QCDB) and Quantum Chemistry Engine (QCEngine): Automation and interoperability among computational chemistry programs

We report that community efforts in the computational molecular sciences (CMS) are evolving toward modular, open, and interoperable interfaces that work with existing community codes to provide more functionality and composability than could be achieved with a single program. The Quantum Chemistry Common Driver and Databases (QCDB) project provides such capability through an application programming interface (API) that facilitates interoperability across multiple quantum chemistry software packages. In tandem with the Molecular Sciences Software Institute and their Quantum Chemistry Archive ecosystem, the unique functionalities of several CMS programs are integrated, including CFOUR, GAMESS, NWChem, OpenMM, Psi4, Qcore, TeraChem, and Turbomole, to provide common computational functions, i.e., energy, gradient, and Hessian computations as well as molecular properties such as atomic charges and vibrational frequency analysis. Both standard users and power users benefit from adopting these APIs as they lower the language barrier of input styles and enable a standard layout of variables and data. These designs allow end-to-end interoperable programming of complex computations and provide best practices options by default.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

Deep learning-enabled probing of irradiation-induced defects in time-series micrographs

Modeling time-series data with convolutional neural networks (CNNs) requires building a model to learn in batches as opposed to training sequentially. Coupling CNNs with in situ or operando techniques opens the possibility of accurately segmenting dynamic reactions and mass transport phenomena to understand how materials behave under the conditions in which they are used. In this article, in situ ion irradiation transmission electron microscopy (TEM) images are used as inputs into the CNN to assess the defect generation rate, defect cluster density, and saturation of defects. We then use the output segmentation maps to correlate with conventional TEM micrographs to assess the model’s ability to detail nanoscale interactions. Next, we discuss the implications of preprocessing and hyperparameters on model variability, accuracy when expanded to other datasets, and the role of regularization when controlling model variance. Ultimately, we eliminate human bias when extrapolating physical metrics, speed up analysis time, decouple reactions that happen at 100 ms intervals, and deploy models that are both accurate and transferable to similar experiments.

Burns, Kory (ORCID:0000000158019909)↗
DOE OSTI2021

Accurate determination of genotypic variance of cell wall characteristics of a Populus trichocarpa pedigree using high-throughput pyrolysis-molecular beam mass spectrometry

Abstract Background Pyrolysis-molecular beam mass spectrometry (py-MBMS) analysis of a pedigree of Populus trichocarpa was performed to study the phenotypic plasticity and heritability of lignin content and lignin monomer composition. Instrumental and microspatial environmental variability were observed in the spectral features and corrected to reveal underlying genetic variance of biomass composition. Results Lignin-derived ions (including m/z 124, 154, 168, 194, 210 and others) were highly impacted by microspatial environmental variation which demonstrates phenotypic plasticity of lignin composition in Populus trichocarpa biomass. Broad-sense heritability of lignin composition after correcting for microspatial and instrumental variation was determined to be H 2 = 0.56 based on py-MBMS ions known to derive from lignin. Heritability of lignin monomeric syringyl/guaiacyl ratio ( S / G ) was H 2 = 0.81. Broad-sense heritability was also high (up to H 2 = 0.79) for ions derived from other components of the biomass including phenolics (e.g., salicylates) and C5 sugars (e.g., xylose). Lignin and phenolic ion abundances were primarily driven by maternal effects, and paternal effects were either similar or stronger for the most heritable carbohydrate-derived ions. Conclusions We have shown that many biopolymer-derived ions from py-MBMS show substantial phenotypic plasticity in response to microenvironmental variation in plantations. Nevertheless, broad-sense heritability for biomass composition can be quite high after correcting for spatial environmental variation. This work outlines the importance in accounting for instrumental and microspatial environmental variation in biomass composition data for applications in heritability measurements and genomic selection for breeding poplar for renewable fuels and materials.

09 BIOMASS FUELS↗
DOE OSTI2022

An Assessment of Potential Dose Impacts from External Contamination on Naval Reactors Facility Waste Canisters (Special Analysis)

This Special Analysis (SA) was performed to address a request by Naval Reactors Facility (NRF) Waste Programs for a permanent exception to limits of removable surface contamination on the exterior of waste canisters shipped to the Remote-Handled Low-Level Waste (RHLLW) Disposal Facility as specified in the waste acceptance criteria (WAC) (PLN-5446). The purpose of this SA is to determine if the NRF-requested levels for removable surface contamination on the exterior of all NRF waste canisters is within the bounds of the current performance assessment (PA). This was done by calculating the groundwater all-pathways dose contribution from surface contamination on the exterior of NRF canisters for the following cases: (1) the exteriors of all NRF waste canisters are contaminated to the 10 CFR 835 Appendix D allowable limits in the current WAC, and (2) the exteriors of all NRF waste canisters are contaminated to the limits requested by NRF Waste Programs. Dose impacts for each case were compared to each other and to the all pathways dose for the PA base case. Dose impacts were also compared to the all pathways dose limit specified in DOE O 435.1. A simple assessment of the potential impacts of the increase in surface contamination using the NRF-requested limits on the biotic, air, and inadvertent intruder pathways was also performed. Based on the results of this SA, the increase in canister exterior contamination limits requested by NRF are well within the bounds of the current PA and will not result in a violation of performance objectives. The results also show the increased limits do not reflect or necessitate a fundamental change to the PA conceptual model, nor a change to the way exterior contamination is not included in PA dose calculations. Therefore, it is recommended the NRF request for an exception to the current limits for external surface contamination be accepted and the revised limits for NRF-generated waste canisters be added to the WAC. The monitoring plan will also be revised to identify external canister contamination as a potential mobile source term that may be detected by monitoring earlier than potential releases from waste. The PA, composite analysis (CA), closure plan, and PA/CA maintenance plan do not require revision. Recommendations are also included for inclusion of NRF procedures used to limit water pool radionuclide variability (and thus canister surface contamination variability) to the waste generator certification process.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2024

Identifying Hydropower Operational Flexibilities in Presence of Streamflow and Net-load Uncertainty (Final Technical report)

In the existing operations, hydropower contributions to future system flexibility are generally modeled while maintaining traditional operating rules and constraints in supporting grid operation, such as the balancing of variable renewable energy production. Moreover, operation of large scale hydropower systems on major rivers has been investigated for decades, utilizing various systems engineering approaches, with the evolving electric grid, as the result of renewable resources integration, compounded by the changing climate (variability of river flows, intensification of hydrologic cycle resulting in more frequent extreme events) affecting water availability, the need for more advanced stochastic modeling and effective uncertainty analysis approaches have become necessary. The research results supported by this funding and presented in this report provide a new look at hydropower operational flexibility enforced by the changes identified above. Understanding how hydropower operates in response to the underlying uncertainties with respect to the system constraints is crucial in identifying its operational flexibility potentials. In this project, the flexibility of the operating hydropower facility is described by capturing uncertainties in both water and power system and formulating the operations as a multistage stochastic optimization problem. The proposed approach supports short- to seasonal-term operations and planning decision horizons.

13 HYDRO ENERGY↗
DOE OSTI2024

First Measurements of Differential Cross Sections In Kinematic Imbalance Variables With The MicroBooNE Detector

Making high-precision measurements of neutrino oscillation parameters requires an unprecedented understanding of neutrino-nucleus scattering. In this presentation, we present the first muon neutrino charged current double-differential cross sections in kinematic imbalance variables. These variables characterize the imbalance in the plane transverse to an incoming neutrino. We use events with a single muon above 100 MeV/c, a single final state proton above 300 MeV/c, and no recorded final state pions. Thus, these variables act as a direct probe of nuclear effects such as final state interactions, Fermi motion, and multi-nucleon processes. We also present a complementary ongoing analysis using electron neutrinos. This channel is of the utmost importance for the extraction of neutrino oscillation parameters by making high-precision measurements. Our measurements allow us to constrain systematic uncertainties associated with neutrino oscillation results performed by near-future experiments of the Short Baseline Neutrino (SBN) program, as well as by future large-scale experiments like DUNE.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2023

Evaluating various composite sampling modes for detecting pathogenic SARS-CoV-2 virus in raw sewage

Inadequate sampling approaches to wastewater analyses can introduce biases, leading to inaccurate results such as false negatives and significant over- or underestimation of average daily viral concentrations, due to the sporadic nature of viral input. To address this challenge, we conducted a field trial within the University of Tennessee residence halls, employing different composite sampling modes that encompassed different time intervals (1 h, 2 h, 4 h, 6 h, and 24 h) across various time windows (morning, afternoon, evening, and late-night). Our primary objective was to identify the optimal approach for generating representative composite samples of SARS-CoV-2 from raw wastewater. Utilizing reverse transcription-quantitative polymerase chain reaction, we quantified the levels of SARS-CoV-2 RNA and pepper mild mottle virus (PMMoV) RNA in raw sewage. Our findings consistently demonstrated that PMMoV RNA, an indicator virus of human fecal contamination in water environment, exhibited higher abundance and lower variability compared to pathogenic SARS-CoV-2 RNA. Significantly, both SARS-CoV-2 and PMMoV RNA exhibited greater variability in 1 h individual composite samples throughout the entire sampling period, contrasting with the stability observed in other time-based composite samples. Through a comprehensive analysis of various composite sampling modes using the Quade Nonparametric ANCOVA test with date, PMMoV concentration and site as covariates, we concluded that employing a composite sampler during a focused 6 h morning window for pathogenic SARS-CoV-2 RNA is a pragmatic and cost-effective strategy for achieving representative composite samples within a single day in wastewater-based epidemiology applications. This method has the potential to significantly enhance the accuracy and reliability of data collected at the community level, thereby contributing to more informed public health decision-making during a pandemic.

sampling timing↗
DOE OSTI2024

Altered cortical thickness-based structural covariance networks in type 2 diabetes mellitus

Cognitive impairment is a common complication of type 2 diabetes mellitus (T2DM), and early cognitive dysfunction may be associated with abnormal changes in the cerebral cortex. This retrospective study aimed to investigate the cortical thickness-based structural topological network changes in T2DM patients without mild cognitive impairment (MCI). Fifty-six T2DM patients and 59 healthy controls underwent neuropsychological assessments and sagittal 3-dimensional T1-weighted structural magnetic resonance imaging. Then, we combined cortical thickness-based assessments with graph theoretical analysis to explore the abnormalities in structural covariance networks in T2DM patients. Correlation analyses were performed to investigate the relationship between the altered topological parameters and cognitive/clinical variables. T2DM patients exhibited significantly lower clustering coefficient (C) and local efficiency (Elocal) values and showed nodal property disorders in the occipital cortical, inferior temporal, and inferior frontal regions, the precuneus, and the precentral and insular gyri. Moreover, the structural topological network changes in multiple nodes were correlated with the findings of neuropsychological tests in T2DM patients. Thus, while T2DM patients without MCI showed a relatively normal global network, the local topological organization of the structural network was disordered. Moreover, the impaired ventral visual pathway may be involved in the neural mechanism of visual cognitive impairment in T2DM patients. This study enriched the characteristics of gray matter structure changes in early cognitive dysfunction in T2DM patients.

Huang, Yang↗
DOE OSTI2025

Aerosol hygroscopicity over the South-East Atlantic Ocean during the biomass burning season – Part 2: Influence of sea salt and burning conditions on CCN hygroscopicity

Biomass burning (BB) significantly influences cloud condensation nuclei (CCN) concentrations over the southeastern Atlantic; however, aerosol hygroscopicity (κ) – a key factor for CCN activation – remains poorly constrained during the BB season. This study investigates κ variability using in situ measurements from Ascension Island during the 2016 and 2017 BB seasons. Results show substantial monthly variability, with κ values lowest in August and increasing through October. On average, κ was significantly higher in 2017 (∼ 0.55) than in 2016 (∼ 0.33), suggesting that the aerosols in 2017 were more hygroscopic and more easily activated as CCN. Sulfate and sea salt were the two dominant contributors to κ and the primary drivers of its interannual variability. During the 2017 BB season, sulfate – the major inorganic component – accounted for ∼ 34 % of the submicron aerosol mass, while sea salt, estimated via κ-closure analysis, contributed ∼ 17 %. The higher κ in 2017 was largely attributed to increased sea salt, likely driven by stronger marine winds. Approximately 67 % of sulfate was linked to BB emissions. Variations in BB combustion efficiency, modulated by regional meteorology, influenced sulfate fraction and thus κ values. Specifically, higher relative humidity and lower wind speeds over BB source regions in 2017 favored smoldering combustion, explaining the higher sulfate fraction. Overall, the observed interannual differences in aerosol hygroscopicity reflect the combined impacts of BB combustion characteristics and sea salt emissions, underscoring the critical roles of both BB and marine aerosol sources in regulating aerosol-cloud interactions over the southeastern Atlantic.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

First Measurements of Differential Cross Sections In Kinematic Imbalance Variables With The MicroBooNE Detector

Making high-precision measurements of neutrino oscillation parameters requires an unprecedented understanding of neutrino-nucleus scattering. In this presentation, we present the first muon neutrino charged current double-differential cross sections in kinematic imbalance variables. These variables characterize the imbalance in the plane transverse to an incoming neutrino. We use events with a single muon above 100 MeV/c, a single final state proton above 300 MeV/c, and no recorded final state pions. Thus, these variables act as a direct probe of nuclear effects such as final state interactions, Fermi motion, and multi-nucleon processes. We also present a complementary ongoing analysis using electron neutrinos. This channel is of the utmost importance for the extraction of neutrino oscillation parameters by making high-precision measurements. Our measurements allow us to constrain systematic uncertainties associated with neutrino oscillation results performed by near-future experiments of the Short Baseline Neutrino (SBN) program, as well as by future large-scale experiments like DUNE.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2024

First Measurements of Differential Cross Sections In Kinematic Imbalance Variables With The MicroBooNE Detector

Making high-precision measurements of neutrino oscillation parameters requires an unprecedented understanding of neutrino-nucleus scattering. In this presentation, we present the first muon neutrino charged current double-differential cross sections in kinematic imbalance variables. These variables characterize the imbalance in the plane transverse to an incoming neutrino. We use events with a single muon above 100 MeV/c, a single final state proton above 300 MeV/c, and no recorded final state pions. Thus, these variables act as a direct probe of nuclear effects such as final state interactions, Fermi motion, and multi-nucleon processes. We also present a complementary ongoing analysis using electron neutrinos. This channel is of the utmost importance for the extraction of neutrino oscillation parameters by making high-precision measurements. Our measurements allow us to constrain systematic uncertainties associated with neutrino oscillation results performed by near-future experiments of the Short Baseline Neutrino (SBN) program, as well as by future large-scale experiments like DUNE.

43 PARTICLE ACCELERATORS↗
DOE OSTI2024

Seasonal variability of wake impacts on US mid-Atlantic offshore wind plant power production

Abstract. The mid-Atlantic will experience rapid wind plant development due to its promising wind resource located near large population centers. Wind turbines and wind plants create wakes, or regions of reduced wind speed, that may negatively affect downwind turbines and plants. We evaluate wake variability and annual energy production with the first yearlong modeling assessment using the Weather Research and Forecasting model, deploying 12 MW turbines across the domain at a density of 3.14 MW km−2, matching the planned density of 3 MW km−2. Using a series of simulations with no wind plants, one wind plant, and complete build-out of lease areas, we calculate wake effects and distinguish the effect of wakes generated internally within one plant from those generated externally between plants. We also provide a first step towards uncertainty quantification by testing the amount of added turbulence kinetic energy (TKE) by 0 % and 100 %. We provide a sensitivity analysis by additionally comparing 25 % and 50 % for a short case study period. The strongest wakes, propagating 55 km, occur in summertime stable stratification, just when New England's grid demand peaks in summer. The seasonal variability of wakes in this offshore region is much stronger than the diurnal variability of wakes. Overall, yearlong simulated wake impacts reduce power output by a range between 38.2 % and 34.1 % (for 0 %–100 % added TKE). Internal wakes cause greater yearlong power losses, from 29.2 % to 25.7 %, compared to external wakes, from 14.7 % to 13.4 %. The overall impact is different from the linear sum of internal wakes and external wakes due to non-linear processes. Additional simulations quantify wake uncertainty by modifying the added amount of turbulent kinetic energy from wind turbines, introducing power output variability of 3.8 %. Finally, we compare annual energy production to New England grid demand and find that the lease areas can supply 58.8 % to 61.2 % of annual load. We note that the results of this assessment are not intended to make nor are they suitable to make commercial judgments about specific wind projects.

17 WIND ENERGY↗
DOE OSTI2025

Evaluation of CMIP6 Streamflow in the Arctic

Earth system models (ESMs) serve as the primary basis for projecting future streamflow changes, but they are biased in terms of the their ability to reproduce historical observations of streamflow. Rigorous downscaling and bias-correction procedures, which are time-consuming and introduce uncertainties, are commonly used to address these biases in streamflow or runoff. However, the applicable limits of streamflow projections remain largely untested through direct comparisons with observations. In this work, we compare historical streamflow time series observations with a suite of Coupled Model Intercomparison Project phase 6 (CMIP6) ESMs to assess the space and time scales at which each ESM represents historic streamflow observations. We focus our analysis on streamflow across the Arctic given the higher degree of warming experienced over this region, underscoring its importance for understanding the future changes. A series of metrics—volume, seasonality, extreme capturing streamflow variability, drought, and flooding is tested to assess ESM simulation skill for total events and overall distributions. Our results indicate that although improvements are necessary in ESM runoff and streamflow projections, the use of temporal averaging and targeting the best-fit model for comparison to observations when a suite of ESMs is considered can provide robust streamflow projections. Moreover, this work provides a basis for contextualizing the limits of ESM applicability for studies aiming to assess streamflow in the future.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Using heterogeneous data to identify signatures of dengue outbreaks at fine spatio-temporal scales across Brazil

Dengue virus remains a significant public health challenge in Brazil, and seasonal preparation efforts are hindered by variable intra- and interseasonal dynamics. Here, we present a framework for characterizing weekly dengue activity at the Brazilian mesoregion level from 2010–2016 as time series properties that are relevant to forecasting efforts, focusing on outbreak shape, seasonal timing, and pairwise correlations in magnitude and onset. In addition, we use a combination of 18 satellite remote sensing imagery, weather, clinical, mobility, and census data streams and regression methods to identify a parsimonious set of covariates that explain each time series property. The models explained 54% of the variation in outbreak shape, 38% of seasonal onset, 34% of pairwise correlation in outbreak timing, and 11% of pairwise correlation in outbreak magnitude. Regions that have experienced longer periods of drought sensitivity, as captured by the “normalized burn ratio,” experienced less intense outbreaks, while regions with regular fluctuations in relative humidity had less regular seasonal outbreaks. Both the pairwise correlations in outbreak timing and outbreak trend between mesoresgions were best predicted by distance. Our analysis also revealed the presence of distinct geographic clusters where dengue properties tend to be spatially correlated. Forecasting models aimed at predicting the dynamics of dengue activity need to identify the most salient variables capable of contributing to accurate predictions. Our findings show that successful models may need to leverage distinct variables in different locations and be catered to a specific task, such as predicting outbreak magnitude or timing characteristics, to be useful. This advocates in favor of “adaptive models” rather than “one-size-fits-all” models. The results of this study can be applied to improving spatial hierarchical or target-focused forecasting models of dengue activity across Brazil.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

SAM Plug-in Development (Phase I Final Report)

The DOE Office of Nuclear Energy (NE) has created an extensive set of advanced modeling and simulation tools for nuclear engineering analysis. The advanced capabilities of these newer analysis codes require more in-depth training, skills, and knowledge in order to effectively utilize them for the design, analysis, and licensing of advanced nuclear systems and experiments. A high learning curve for inexperienced users may deter organizations from incorporating these tools into their internal processes. This project involved development of a plug-in to the Symbolic Nuclear Analysis Package (SNAP) for the System Analysis Module (SAM) tool. SAM is an advanced system analysis tool for reactor transient analyses being developed at Argonne National Laboratory under the U.S. DOE Office of Nuclear Energy’s Nuclear Energy Advanced Modeling and Simulation (NEAMS) program. SAM utilizes an object-oriented application framework (MOOSE), and its underlying meshing and finite-element library (libMesh) and linear and non-linear solvers (PETSc), to leverage modern advanced software environments and numerical methods. SNAP provides a highly flexible framework for creating, modifying and documenting input for engineering analysis codes such as SAM as well as extensive functionality for submitting, monitoring, and interacting with the codes through an intuitive graphical user interface (GUI). The common user interface provided by SNAP minimizes the learning curve for engineers starting with a new analysis code and provides an intuitive framework for transitioning between different analysis codes. SNAP provides a powerful but intuitive interface to facilitate access to advanced modeling and simulation tools for inexperienced users. Unlike many “form based” GUI’s, SNAP maps each engineering code’s component input to an internal database which manages all component input parameters along with component interconnections. This level of abstraction permits SNAP to support several advanced capabilities such as renodalization, model validation and consistency checks, embedded documentation, model notebook generation, data ownership and reviewer tracking, and variable assignment for inputs to name a few. SNAP includes a built-in Python interpreter and is interfaced to several commercial and open source packages including CPython, MATLAB/OCTAVE, Microsoft Office, Open Office, and SANDIA’s DAKOTA package which provides Uncertainty Quantification analysis through the SNAP plug-ins. Phase I of this project involved development a fully functional basic SAM plug-in to SNAP. This plug-in provides the ability to import existing models, graphically construct, edit and submit models using SNAP’s extensive functionality.

99 GENERAL AND MISCELLANEOUS↗
DOE OSTI2024

Remote Sensing and GIS data at 1km-grid over Chesapeake Bay used in “He et al. 2024, Effects of spatial variability in vegetation phenology, climate, landcover, biodiversity, topography, and soil property on soil respiration across a coastal ecosystem”

The package contains the data layers used in “He et al. 2024, Effects of spatial variability in vegetation phenology, climate, landcover, biodiversity, topography, and soil property on soil respiration across a coastal ecosystem”. The study aims to use multi-source remote sensing and GIS datasets to investigate the spatial heterogeneity and identify spatial zones with similar environmental characteristics and understand the primary driving factors affecting soil respiration within sub-ecosystems of the coastal ecosystem. We employed unsupervised hierarchical clustering analysis to identify spatial regions with distinct environmental characteristics, then determined the main driving factors using Random Forest regression and SHapley Additive exPlanations (SHAP). Spatial data layers include soil respiration, kernel Normalized Difference Vegetation Index (kNDVI) computed from Harmonized Landsat 8 and Sentinel-2 time series, climate variables from the Daymet dataset, land cover, biodiversity, topographical metrics, soil property, and tidal elevation.

54 ENVIRONMENTAL SCIENCES↗