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At least 1,099 records · Page 61

Using CAD/CAM to improve productivity - The IPAD approach

Progress in designing and implementing CAD/CAM systems as a result of the NASA Integrated Programs for Aerospace-Vehicle Design is discussed. Essential software packages have been identified as executive, data management, general user, and geometry and graphics software. Data communication, as a means to integrate data over a network of computers of different vendors, provides data management with the capability of meeting design and manufacturing requirements of the vendors. Geometry software is dependent on developmental success with solid geometry software, which is necessary for continual measurements of, for example, a block of metal while it is being machined. Applications in the aerospace industry, such as for design, analysis, tooling, testing, quality control, etc., are outlined.

Fulton, R. E.↗

Unambiguous metabolite identification in high-throughput metabolomics by hybrid 1D 1 H NMR/ESI MS 1 approach: Hybrid 1D 1 H NMR/ESI MS 1 metabolomics method

We present a novel approach to improve accuracy of metabolite identification by combining direct infusion ESI MS1 with 1D 1H NMR spectroscopy. The new approach first applies standard 1D 1H NMR metabolite identification protocol by matching the chemical shift, J-coupling and intensity information of experimental NMR signals against the NMR signals of standard metabolites in metabolomics library. This generates a list of candidate metabolites. The list contains false positive and ambiguous identifications. Next, we constrained the list with the chemical formulas derived from high-resolution direct infusion ESI MS1 spectrum of the same sample. Detection of the signals of a metabolite both in NMR and MS significantly improves the confidence of identification and eliminates false positive identification. 1D 1H NMR and direct infusion ESI MS1 spectra of a sample can be acquired in parallel in several minutes. This is highly beneficial for rapid and accurate screening of hundreds of samples in high-throughput metabolomics studies. In order to make this approach practical, we developed a software tool, which is integrated to Chenomx NMR Suite. The approach is demonstrated on a model mixture, tomato and Arabidopsis thaliana metabolite extracts, and human urine.

Environmental Molecular Sciences Laboratory↗

Influence of Magnetically Conjugate Fragments of Auroral Emission Images on the Accuracy of Determining E{sub av} of Precipitating Electrons

Results of magnetic conjugation of image fragments of auroral emissions at different altitudes along the magnetic field lines and preliminary results of evaluation of their influence on the accuracy of remote mapping of energy characteristics of precipitating electrons are presented. The results are obtained using the code of tracing being an integral part of the software Vector M intended for calculation of accompanying, geophysical, and astronomical information for the center of mass of a space vehicle (SV) and remote observation of aurora by means of Aurovisor-VIS/MP imager onboard the SV Meteor-MP to be launched.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

A novel morphometry system automatically assessing the growth and regeneration of intestinal organoids

Highlights: • A new morphometry system for objectively evaluating organoid growth. • Measurable perimeter of organoid cultured for 24 h taken as an “Organoid Unit”. • Heterogeneities and regeneration of organoids can be evaluated by “Organoid Unit”. • Effects of radiation sensitizing or protective agents were objectively measured. As compared with 2D cell line cultures, 3D intestinal organoids are better at maximally recapitulating the physiological features of stem cells in vivo. However, the complex 3D structure is an obstacle which must be objectively and automatically evaluated to assess colony growth and regeneration. Meanwhile, no internal standard currently exists for evaluating the size of heterogeneities in organoids or defining those regenerating colonies. Herein, we developed a simple morphometry system to image MTT-stained organoids. The growth curve of organoids can be automatically generated based upon analyzing the integrated optical density using software. Referencing the definition standards of in vivo regenerating crypts, the perimeters of crypts cultured 24 h after seeding were selected as an “Organoid Unit” to further evaluate colony survival rate and colony size heterogeneities after exposure to varying doses of irradiation. Moreover, the morphometry-based quantification data collected confirmed other findings associated with radiation sensitizing effects of ataxia telangiectasia mutated (ATM) and ataxia telangiectasia and Rad3-related protein (ATR) inhibitor and the radiation protective effect of IL-22. In summary, the novel organoid morphometry system combined with a new internal reference is a practical means for standardizing assessment of growth, survival and regeneration of intestinal organoid colonies. This method has promise to facilitate drug screens in intestinal and other organoid systems.

60 APPLIED LIFE SCIENCES↗

A general approach to develop reduced order models for simulation of solid oxide fuel cell stacks

A reduced order modeling approach based on response surface techniques was developed for solid oxide fuel cell stacks. This approach creates a numerical model that can quickly compute desired performance variables of interest for a stack based on its input parameter set. The approach carefully samples the multidimensional design space based on the input parameter ranges, evaluates a detailed stack model at each of the sampled points, and performs regression for selected performance variables of interest to determine the responsive surfaces. After error analysis to ensure that sufficient accuracy is established for the response surfaces, they are then implemented in a calculator module for system-level studies. The benefit of this modeling approach is that it is sufficiently fast for integration with system modeling software and simulation of fuel cell-based power systems while still providing high fidelity information about the internal distributions of key variables. This paper describes the sampling, regression, sensitivity, error, and principal component analyses to identify the applicable methods for simulating a planar fuel cell stack.

Pan, Wenxiao↗

Analysis of OpenMP 4.5 Offloading in Implementations: Correctness and Overhead

The OpenMP language features have been evolving to meet the rapid development in hardware platforms. This journal focuses on evaluating implementations of OpenMP 4.5 target offload features in compilers such as Clang, XL and GCC that are an integral part of the software harness on supercomputers and clusters. We use Summit (Top supercomputer in the world as of November 2018) as one of our experimental setup. Such an effort is particularly critical on such supercomputers as that is being widely used by application developers to run their scientific codes at scale. Our tests not only evaluate the OpenMP implementations but also expose ambiguities within the OpenMP 4.5 specification. We also assess the overhead of the different OpenMP runtimes in relationship to the different directives and clauses. This helps in assessing the interaction of different OpenMP directives independent of other application artifacts. We are aware that the implementations are constantly evolving and Summit is advertised as having only partial OpenMP 4.x support. This is a synergistic effort to help identify and fix bugs in features’ implementations that are required by applications and prevent deployment delays later on. Going forward, we also plan to interact with standard benchmarking organizations like SPEC/HPG to donate our tests and mini-apps/kernels for potential inclusion in the next release versions of SPEC benchmark suite.

97 MATHEMATICS AND COMPUTING↗

Renewable energy analysis in indigenous communities using bottom-up demand prediction

This paper provides a methodology for the holistic analysis of hybrid renewable energy systems in rural communities. Electric demand is an important component for modeling and analysis of renewable energy systems. Typically, electric demand data is not available due to the internal privacy policies of utility providers. Therefore, this study proposes the use of bottom-up approaches for the development of the electric demand profile, considering the general homogeneity of residential and commercial buildings in rural communities. As a test case, this study develops the electric demand profile and investigates the technical and environmental feasibility of a hybrid renewable energy system for the New Town community on the Fort Berthold Indian Reservation (FBIR) in North Dakota. This study conducts the hybrid renewable energy system’s analysis by developing scripts in the LK scripting language and integrating System Advisor Model software’s open-source modules for modeling of renewable energy systems. Here, the results for the validation testbed of this study show that hybrid renewable resources have higher ratios of energy used for self-consumption to the total energy generated compared to stand-alone wind and PV farms.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Integrated fluorescence light microscopy-guided cryo-focused ion beam-milling for in situ montage cryo-ET

Cryogenic-electron tomography (cryo-ET) permits the in situ visualization of biological macromolecules at the molecular level. Owing to the variable thickness of cells, tissues and organisms, frozen specimens may need to be thinned by cryo-focused ion beam (FIB) milling to produce thin (<500 nm) cryo-lamellae suitable for cryo-ET. Locating regions of interest remains a challenge because untargeted milling can lead to inadvertent ablation and removal of regions of interest. Correlative light and electron microscopy, combined with cryo-FIB milling, can guide the identification of labeled targets in the cellular milieu. Multiple transfers between cryo-imaging instruments, cumbersome correlation algorithms, limited accuracy and low throughput have hindered the routine adoption of cryo-FIB milling within a multimodal correlative workflow for in situ structural biology. Here, in this study, we present a workflow for 3D correlative cryo-fluorescence light microscopy-FIB-ET that streamlines fluorescence light microscopy-guided FIB milling, improving throughput while preserving both structural and contextual information. The complete integration of hardware and software described here minimizes sample contamination from cross-platform exchanges and greatly enhances the efficiency of 3D targeting in cryo-milling. We then describe procedures for implementing montage parallel array cryo-ET (MPACT), which can be easily adapted to any modern life-science transmission electron microscope. MPACT supports high-throughput cryo-ET acquisitions (10 tilt series in 1.5 h) for structure determination and comprehensive contextual understanding of macromolecules within their native surroundings. A complete session from sample preparation to MPACT data processing takes 5−7 d for an individual experienced in both cryo-EM and cryo-FIB milling.

Yang, Jie E. [Univ. of Wisconsin, Madison, WI (Uni↗

Chapter 8: A 'Global' View on Bifacial Gain: Dependence on Geographic Location and Environmental Conditions

The simulation results presented in this chapter demonstrate how bifacial PV systems can bring a performance gain all around the globe, resolving a certain misbelief that they may only form a niche market restricted to specific locations or installations. Global predictions, based on irradiance, indicate bifacial gains in the order of 50% of the natural albedo for equator-facing systems with optimized tilt angle. In locations with low clearness index, the bifacial gain can even be higher. At system level the bifacial gain will be reduced by 20% to 50% relative to a free-standing panel, due to increased self-shading and to limitation of the diffuse irradiance on the rear by adjacent sheds. Even though the rear side irradiance of a bifacial module is inherently inhomogeneous, due to self-shading and external mounting structures, our simulations have shown that the RSD of the total irradiance does not exceed 5%, even at very high albedo, and will usually be much smaller. The simulation methods applied in this chapter and their ongoing integration into commercially available software tools, like PVsyst, will give system designers and installers more visibility on the configuration layout of a bifacial PV plant at their specific location, the associated bifacial gain and the effect on their return on investment.

14 SOLAR ENERGY↗

Adoption of a token-based authentication model for the CMS Submission Infrastructure

The CMS Submission Infrastructure (SI) is the main computing resource provisioning system for CMS workloads. A number of HTCondor pools are employed to manage this infrastructure, which aggregates geographically distributed resources from the WLCG and other providers. Historically, the model of authentication among the diverse components of this infrastructure has relied on the Grid Security Infrastructure (GSI), based on identities and X509 certificates. In contrast, commonly used modern authentication standards are based on capabilities and tokens. The WLCG has identified this trend and aims at a transparent replacement of GSI for all its workload management, data transfer and storage access operations, to be completed during the current LHC Run 3. As part of this effort, and within the context of CMS computing, the Submission Infrastructure group is in the process of phasing out the GSI part of its authentication layers, in favor of IDTokens and Scitokens. The use of tokens is already well integrated into the HTCondor Software Suite, which has allowed us to fully migrate the authentication between internal components of SI. Additionally, recent versions of the HTCondor-CE support tokens as well, enabling CMS resource requests to Grid sites employing this CE technology to be granted by means of token exchange. After a rollout campaign to sites, successfully completed by the third quarter of 2022, the totality of HTCondor CEs in use by CMS are already receiving Scitoken-based pilot jobs. On the ARC CE side, a parallel campaign was launched to foster the adoption of the REST interface at CMS sites (required to enable token-based job submission via HTCondor-G), which is nearing completion as well. In this contribution, the newly adopted authentication model will be described. We will then report on the migration status and final steps towards complete GSI phase out in the CMS SI.

Pérez-Calero Yzquierdo, Antonio↗

Recent modelling advances for ultrasonic TOFD inspections

The ultrasonic TOFD (Time of Flight Diffraction) Technique is commonly used to detect and characterize disoriented cracks using their edge diffraction echoes. An overview of the models integrated in the CIVA software platform and devoted to TOFD simulation is presented. CIVA allows to predict diffraction echoes from complex 3D flaws using a PTD (Physical Theory of Diffraction) based model. Other dedicated developments have been added to simulate lateral waves in 3D on planar entry surfaces and in 2D on irregular surfaces by a ray approach. Calibration echoes from Side Drilled Holes (SDHs), specimen echoes and shadowing effects from flaws can also been modelled. Some examples of theoretical validation of the models are presented. In addition, experimental validations have been performed both on planar blocks containing calibration holes and various notches and also on a specimen with an irregular entry surface and allow to draw conclusions on the validity of all the developed models.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DIASCoPE: Directly integrated acoustic system combined with pressure experiments—A new method for fast acoustic velocity measurements at high pressure

A novel experimental system to measure elastic wave velocities in samples in situ under extreme conditions of pressure and temperature in a multi-anvil apparatus has been installed at Beamline 6-BM-B of the Advanced Photon Source at Argonne National Laboratory. This system allows for measurement of acoustic velocities via ultrasonic interferometry, and makes use of the synchrotron beam to measure sample densities via X-ray diffraction and sample lengths using X-radiographic imaging. This system is fully integrated into the automated software controls of the beamline and is capable of collecting robust data on elastic wave travel times in less than 1 s, which is an improvement of more than one to two orders of magnitude over existing systems. Moreover, this fast data collection time has been shown to have no effect on the obtained travel time results. This allows for more careful study of time-dependent phenomena with tighter snapshots in time of processes that would otherwise be lost or averaged out in other acoustic measurement systems.

Whitaker, Matthew L.↗

Prediction of stability constants of metal–ligand complexes by machine learning for the design of ligands with optimal metal ion selectivity

The new LOGKPREDICT program integrates HostDesigner molecular design software with the machine learning (ML) program Chemprop. By supplying HostDesigner with predicted log K values, LOGKPREDICT enhances the computer-aided molecular design process by ranking ligands directly by metal–ligand binding strength. Harnessing reliable experimental data from a historic National Institute of Standards and Technology (NIST) database and data from the International Union of Pure and Applied Chemistry (IUPAC), we train message passing neural net algorithms. The multi-metal NIST-based ML model has a root mean square error (RMSE) of 0.629 ± 0.044 (R 2 of 0.960 ± 0.006), while two versions of lanthanide-only IUPAC-based ML models have, respectively, RMSE of 0.764 ± 0.073 (R 2 of 0.976 ± 0.005) and 0.757 ± 0.071 (R 2 of 0.959 ± 0.007). For relative log K predictions on an out-of-sample set of six ligands, demonstrating metal ion selectivity, the RMSE value reaches a commendably low 0.25. Here we showcase the use of LOGKPREDICT in identifying ligands with high selectivity for lanthanides in aqueous solutions, a finding supported by recent experimental evidence. We also predict new ligands yet to be verified experimentally. Therefore, our ML models implemented through LOGKPREDICT and interfaced with the ligand design software HostDesigner pave the way for designing new ligands with predetermined selectivity for competing metal ions in an aqueous solution.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

An adaptive masking method for beam halo measurement by a digital micro mirror device

We report that in high intensity particle beams, irregularities in cathode emission, scattering effects, dark current and space charge forces can lead to a common phenomenon termed beam halo with associated emittance growth, beam loss and overall beam quality degradation. It is of fundamental interest and practical importance to precisely monitor such beam halo, which could offer valuable insights into the experimental strategy for the suppression of this undesired feature. A Digital Micro mirror Device (DMD) is a computer-controlled micro-electrical-mechanical system that contains a compact array of physically independent reflective mirrors. Using a standard DMD, we come up with an adaptive masking method for halo measurement, which demonstrates superior robustness and efficiency comparing to the conventional approaches as confirmed by simulation and experimental results. Our development includes an integrated package of hardware, software and a graphic user interface (GUI) that is robust and portable and can be applied as a beam halo diagnostic for electron guns or radiating charged particle beams in general.

43 PARTICLE ACCELERATORS↗

pyDiSCaMB : enabling the use of multipolar scattering factors in Phenix

Multipolar scattering models, such as the transferable aspherical atom model, account for atomic chemical interactions and provide a more accurate representation of experimental data. However, the simpler independent atom model (IAM), which assumes non-interacting atoms, is the only model available in the most widely used macromolecular refinement programs. This is primarily because IAM offers a hard-to-beat combination of computational efficiency and modelling power at typical macromolecular resolutions. By contrast, more accurate multipolar modelling has historically been limited due to its computational cost and the absence of an interface between software capable of calculating structure factors and gradients based on multipolar models and software designed for macromolecular refinement. This work introduces pyDiSCaMB , a Python software package designed to integrate between the computational crystallography toolbox ( cctbx ) and the quantum crystallography library DiSCaMB ( Densities in Structural Chemistry and Molecular Biology ), thus enabling multipolar scattering models in Phenix 's toolkit. The implementation, features and capabilities of pyDiSCaMB are presented, the runtimes for the calculation of structure factor and target gradients with respect to atomic parameters are explored, and Fourier images of electrostatic potential, electron density and deformation maps are computed as illustrative examples. The pyDiSCaMB library will make multipolar modelling widely available to the structural biology community, potentially transforming refinement and model-building for both crystallography and cryogenic electron microscopy (cryoEM).

MATTS data bank↗

Exploring the mobility and energy implications of shared versus private autonomous vehicles

The prevailing trend toward greater automation and connectivity requires modeling and analysis tools to explore connectivity, automation, decision science and other future mobility issues at multiple scales. This paper describes various modeling efforts in order to model the mobility and energy impact of autonomous and connected technologies; design of scenarios under different technological, behavioral, and socioeconomic assumptions; and finally, key findings from the scenario runs enabled by the advanced models developed. The integrated ABM-DTA software POLARIS has been extended to include transit, intra-household vehicle sharing, transportation network company (TNC) operations along with updates to the mesoscopic traffic models and value of time adjustments due to new technologies affecting the mode, destination, and route choice. The three scenarios are summarized as high sharing - low automation, high sharing - high automation, and low sharing - high automation, with VMT changes ranging from -13% to 42%.

Multi-autonomous Vehicle Studies, Models, Techniqu↗

A Review of Cyber-Physical Security for Photovoltaic Systems

In this paper, the challenges and a future vision of the cyber-physical security of photovoltaic (PV) systems are discussed from a firmware, network, PV converter controls, and grid security perspective. The vulnerabilities of PV systems are investigated under a variety of cyber-attacks, ranging from data integrity attacks to software-based attacks. A success rate metric is designed to evaluate the impact and facilitate decision making. Model-based and data-driven methods for threat detection and mitigation are summarized. In addition, the blockchain technology that addresses cyber-attacks in software and cyber networks is described. Simulation and experimental results that show the impact of cyber-attacks at the converter (device) and grid (system) levels are presented. Finally, potential research opportunities are discussed for next-generation, cyber-secure power electronics systems. These opportunities include multi-scale controllability, self-/event-triggering control, artificial intelligence/machine learning, hot patching, and online security. As of today, this study will be one of the few comprehensive studies in this emerging and fast-growing area.

14 SOLAR ENERGY↗

Obstacles to Practical Digital Supply Chain Risk Management in the Energy Sector

Cyber supply chain risk management (C-SCRM) programs must consider operations that depend on the lifecycles of digital components such as hardware, firmware, software, and services. We integrate academic literature, historical incidents, and existing standards to identify obstacles faced by C-SCRM programs.

Business Process Management & Integration↗