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At least 1,099 records · Page 61

Peptide identification

Peptides are identified from a list of candidates using collision-induced dissociation tandem mass spectrometry data. A probabilistic model for the occurrence of spectral peaks corresponding to frequently observed partial peptide fragment ions is applied. As part of the identification procedure, a probability score is produced that indicates the likelihood of any given candidate being the correct match. The statistical significance of the score is known without necessarily having reference to the actual identity of the peptide. In one form of the invention, a genetic algorithm is applied to candidate peptides using an objective function that takes into account the number of shifted peaks appearing in the candidate spectrum relative to the test spectrum.

59 BASIC BIOLOGICAL SCIENCES↗

Generation of pareto optimal ensembles of calibrated parameter sets for climate models.

Climate models have a large number of inputs and outputs. In addition, diverse parameters sets can match observations similarly well. These factors make calibrating the models difficult. But as the Earth enters a new climate regime, parameters sets may cease to match observations. History matching is necessary but not sufficient for good predictions. We seek a 'Pareto optimal' ensemble of calibrated parameter sets for the CCSM climate model, in which no individual criteria can be improved without worsening another. One Multi Objective Genetic Algorithm (MOGA) optimization typically requires thousands of simulations but produces an ensemble of Pareto optimal solutions. Our simulation budget of 500-1000 runs allows us to perform the MOGA optimization once, but with far fewer evaluations than normal. We devised an analytic test problem to aid in the selection MOGA settings. The test problem's Pareto set is the surface of a 6 dimensional hypersphere with radius 1 centered at the origin, or rather the portion of it in the [0,1] octant. We also explore starting MOGA from a space-filling Latin Hypercube sample design, specifically Binning Optimal Symmetric Latin Hypercube Sampling (BOSLHS), instead of Monte Carlo (MC). We compare the Pareto sets based on: their number of points, N, larger is better; their RMS distance, d, to the ensemble's center, 0.5553 is optimal; their average radius, {mu}(r), 1 is optimal; their radius standard deviation, {sigma}(r), 0 is optimal. The estimated distributions for these metrics when starting from MC and BOSLHS are shown in Figs. 1 and 2.

54 ENVIRONMENTAL SCIENCES↗

Towards understanding initiation reactions of explosives via ultrafast laser quantum control

Optimal control can be utilized to control the initiation reaction of explosives, where time dependent phase shaped electric fields drive the chemical systems towards a desired state. For quantum controlled initiation (QCI) of explosives a pulse is created which seeks to achieve initiation by employing shaped ultraviolet light. QCI will enhance the understanding of energetic material reactions by yielding insight into the characteristics, such as critical 'hot spot' size and reaction dynamics, necessary for initiation. Quantum control experiments require the ability to: (1) phase and amplitude shape an ultrafast laser pulse, (2) measure the effect of pulse shape, and (3) optimize the desired outcome. Pulse shaping is performed with a 4-focal length dispersed fused silica acousto-optic modulator (AOM) at 400 nm in the ultraviolet (UV). Transient absorption spectroscopy is used to measure the pulse shape effects. Both global and local optimization search routines such as genetic algorithm, differential evolution, and downhill simplex are used to search for the optimal pulse shape. Hexanitroazobenzene (HNAB), Trinitroanaline (TNA) and Diaminoazozyfurazan (DAAF) are excited to the first electronic state with 400 nm light. Our initiation experiments are studying the effect of phase shaped 400 nm pulses on HNAB, TNA and DAAF. Novel transient absorption spectra for each material have been obtained and note worthy regions further investigated with single parameter control (second order spectral phase and energy). Many systems have simple intensity control such as that shown by DAAF. TNA and HNAB have spectral features that are not single parameter driven and are being further investigated with complex control.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗

Using SWIFT Data

SWIFT has been shown to be a promising new diagnostic tool with many applications. SWIFT diagnostics coupled with PDV and other tools represent an exciting new source of data. SIAS is the name for the methodology we use to couple our SWIFT data to calculations for maximum utilization. SIAS, formerly Schlieren Inverse Analysis Software -- now SWIFT Inverse Analysis Software, uses SWIFT data and a hydro code calculation repeated in a genetic algorithm loop to reconstruct pressure history of shock transducer material interface.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

MUTLI-OBJECTIVE OPTIMIZATION OF MICROSTRUCTURE IN WROUGHT MAGNESIUM ALLOYS

The microstructural features that govern the mechanical properties of wrought magnesium alloys include grain size, crystallographic texture, and twinning. Several processes based on shear deformation have been developed that promote grain refinement, weakening of the basal texture, as well as the shift of the peak intensity away from the center of the basal pole figure - features that promote room temperature ductility in Mg alloys. At ORNL, we are currently exploring the concept of introducing nano-twins within sub-micron grains as a possible mechanism for simultaneously improving strength and ductility by exploiting a potential dislocation glide along the twin-matrix interface a mechanism that was originally proposed for face-centered cubic materials. Specifically, we have developed an integrated modeling and optimization framework in order to identify the combinations of grain size, texture and twin spacing that can maximize strength-ductility combinations. A micromechanical model that relates microstructure to material strength is coupled with a failure model that relates ductility to a critical shear strain and a critical hydrostatic stress. The micro-mechanical model is combined with an optimization tool based on genetic algorithm. A multi-objective optimization technique is used to explore the strength-ductility space in a systematic fashion and identify optimum combinations of the microstructural parameters that will simultaneously maximize the strength-ductility in the alloy.

magnesium↗

The JLAB UV Undulator

Recently the JLAB FEL has demonstrated 150 W at 400 nm and 200 W at 700 nm using a 33mm period undulator designed and built by STI Optronics. This paper describes the undulator design and performance. Two key requirements were low phase error, zero steering and offset end fields and small rms trajectory errors. We will describe a new genetic algorithm that allowed phase error minimization to 1.8 degrees while exceeding specifications. The mechanical design, control system and EPICS interface will also be summarized.

43 PARTICLE ACCELERATORS↗

An Analysis Framework for Investigating the Trade-offs Between System Performance and Energy Consumption in a Heterogeneous Computing Environment

Rising costs of energy consumption and an ongoing effort for increases in computing performance are leading to a significant need for energy-efficient computing. Before systems such as supercomputers, servers, and datacenters can begin operating in an energy-efficient manner, the energy consumption and performance characteristics of the system must be analyzed. In this paper, we provide an analysis framework that will allow a system administrator to investigate the tradeoffs between system energy consumption and utility earned by a system (as a measure of system performance). We model these trade-offs as a bi-objective resource allocation problem. We use a popular multi-objective genetic algorithm to construct Pareto fronts to illustrate how different resource allocations can cause a system to consume significantly different amounts of energy and earn different amounts of utility. We demonstrate our analysis framework using real data collected from online benchmarks, and further provide a method to create larger data sets that exhibit similar heterogeneity characteristics to real data sets. This analysis framework can provide system administrators with insight to make intelligent scheduling decisions based on the energy and utility needs of their systems.

Friese, Ryan↗

MULTI-SCALE MODELING AND APPROXIMATION ASSISTED OPTIMIZATION OF BARE TUBE HEAT EXCHANGERS

Air-to-refrigerant heat exchangers are very common in air-conditioning, heat pump and refrigeration applications. In these heat exchangers, there is a great benefit in terms of size, weight, refrigerant charge and heat transfer coefficient, by moving from conventional channel sizes (~ 9mm) to smaller channel sizes (< 5mm). This work investigates new designs for air-to-refrigerant heat exchangers with tube outer diameter ranging from 0.5 to 2.0mm. The goal of this research is to develop and optimize the design of these heat exchangers and compare their performance with existing state of the art designs. The air-side performance of various tube bundle configurations are analyzed using a Parallel Parameterized CFD (PPCFD) technique. PPCFD allows for fast-parametric CFD analyses of various geometries with topology change. Approximation techniques drastically reduce the number of CFD evaluations required during optimization. Maximum Entropy Design method is used for sampling and Kriging method is used for metamodeling. Metamodels are developed for the air-side heat transfer coefficients and pressure drop as a function of tube-bundle dimensions and air velocity. The metamodels are then integrated with an air-to-refrigerant heat exchanger design code. This integration allows a multi-scale analysis of air-side performance heat exchangers including air-to-refrigerant heat transfer and phase change. Overall optimization is carried out using a multi-objective genetic algorithm. The optimal designs found can exhibit 50 percent size reduction, 75 percent decrease in air side pressure drop and doubled air heat transfer coefficients compared to a high performance compact micro channel heat exchanger with same capacity and flow rates.

CFD↗

Frontal view reconstruction for iris recognition

Iris recognition can be accomplished for a wide variety of eye images by correcting input images with an off-angle gaze. A variety of techniques, from limbus modeling, corneal refraction modeling, optical flows, and genetic algorithms can be used. A variety of techniques, including aspherical eye modeling, corneal refraction modeling, ray tracing, and the like can be employed. Precomputed transforms can enhance performance for use in commercial applications. With application of the technologies, images with significantly unfavorable gaze angles can be successfully recognized.

97 MATHEMATICS AND COMPUTING↗

LaDa™

High-Throughput software platform to create/launch/analyze physics-related calculations. The front-end is a python API which allows the user to create any conceivable first-principles physics calculation. Is is coupled to an ipython interface to launch and retrieve large number of calculations. It was successfully used in high-throughput calculations of point defect formation enthalpies, compound formation enthalpies, and a genetic algorithm search of direct-gap silicon/germanium structures.

Source record↗

167-PFlops deep learning for electron microscopy: from learning physics to atomic manipulation

An artificial intelligence system called MENNDL, which used 25,200 NVIDIA Volta GPUs on Oak Ridge National Laboratory's Summit machine, automatically designed an optimal deep learning network in order to extract structural information from raw atomic-resolution microscopy data. In a few hours, MENNDL creates and evaluates millions of networks using a scalable, parallel, asynchronous genetic algorithm augmented with a support vector machine to automatically find a superior deep learning network topology and hyper-parameter set than a human expert can find in months. For the application of electron microscopy, the system furthers the goal of improving our understanding of the electron-beam-matter interactions and real-time image-based feedback, which enables a huge step beyond human capacity towards nanofabricating materials automatically. MENNDL has been scaled to the 4,200 available nodes of Summit achieving a measured 152.5 PFlops, with an estimated sustained performance of 167 PFlops when the entire machine is available.

Patton, Robert↗

Shining a light on amorphous U 2 O 7 : A computational approach to understanding amorphous uranium materials

Mixed-phase and low-symmetry systems are widely observed among uranium oxide materials. Amorphous-U 2 O 7 forms during the calcination of studtite, a uranyl peroxide mineral. Using a genetic algorithm search for stable crystalline phases, we have identified a potentially stable phase of U2O7 that shares structural features with experimentally observed amorphous U2O7 samples. The crystalline structure is expected to undergo a solid&ndash;solid phase change around 12 GPa.

Shields, Ashley E.↗

Optimization of Workload Distribution of Data Centers Based on a Self-Learning In Situ Adaptive Tabulation Model

Data center cooling typically involves non-uniform airflow and temperature distributions, which are affected by the IT workload distribution. It is helpful to simulate the airflow and temperature to optimize the workload distribution. Traditional computational fluid dynamics (CFD) simulation is usually time-consuming while conventional reduced order models (ROMs), though computationally fast, may generate inaccurate results even after being fully trained. In Situ Adaptive Tabulation (ISAT), contracting to conventional ROM, can make prediction with error lower than a user-specified tolerance. To demonstrate using of ISAT for optimal workload distribution in data center, this paper presents a preliminary study of an ISAT-based genetic algorithm optimization platform. The ISAT is trained offline by using the results from CFD simulations using a hypothetical simple data center. The optimal workload distribution determined by the platform leads to approximately 6.8% of energy savings when compared to the benchmark with a uniform workload distribution. We note that the time cost for the entire optimization process, including the training of ISAT is about 4 hours, which is acceptable in the design phase.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

CYCLE MODELING AND OPTIMIZATION OF AN INTEGRALLY GEARED sCO2 COMPANDER

This paper presents the selection of a system configuration and off-design control method for an integrally geared compander based on cycle modeling and optimization. The goal of the cycle modeling was to determine a cycle configuration that would reach an efficiency of 50% at design conditions and to optimize off-design control to maintain high efficiencies. The compander is being developed for use in a concentrated solar power supercritical carbon dioxide power plant with expected turbine inlet temperatures of 705°C and utilizing dry cooling leading to compressor inlet temperature varying between 35°C and 55°C. The compander is unique as it consists of eight turbomachinery stages on four pinions all being driven by a single bull gear. The separate stages offer the opportunity to consider a variety of flow splits and cycle configurations including intercooling and multiple stages of reheat. Cycle modeling was conducted in two stages: on-design and off-design. On-design modeling was simulated with all components operating at their design point. This was used to compare the performance of different cycle configurations and design temperatures. Off-design modeling was then performed to investigate the temperature dependence of the cycle efficiency and power output and to develop a control strategy. Strategies considered and discussed include: turbine bypass, compressor recycle, inlet guide vanes, and inventory control. To determine the best operating conditions for each configuration and control strategy, a genetic algorithm was implemented to optimize the cycle performance across the range of operating temperatures being considered. The final selection of cycle configuration, design temperature and control strategy is also presented.

bennett, jeffrey↗

Systems and methods for direct estimation of battery parameters using only charge/discharge curves

Electrochemical models for the lithium-ion battery are useful in predicting and controlling its performance. The values of the parameters in these models are vital to their accuracy. However, not all parameters can be measured precisely, especially when destructive methods are prohibited. In some embodiments of the present disclosure, a parameter estimation approach is used to estimate the open circuit potential of the positive electrode (Up) using piecewise linear approximation together with all the other parameters of a single particle model. Up and 10 more parameters may be estimated from a single discharge curve without knowledge of the electrode chemistry using a technique such as a genetic algorithm. Different case studies were presented for estimating Up with different types of parameters of the battery model. The estimated parameters were then validated by comparing simulations at different discharge rates with experimental data.

Qi, Yanbo↗

Non-linear Multidimensional Optimization for use in Wire Scanner Fitting

To ensure experiment efficiency and quality from the Continuous Electron Beam Accelerator at Jefferson Lab, beam energy, size, and position must be measured. Wire scanners are devices inserted into the beamline to produce measurements which are used to obtain beam properties. Extracting physical information from the wire scanner measurements begins by fitting Gaussian curves to the data. This study focuses on optimizing and automating this curve-fitting procedure. We use a hybrid approach combining the efficiency of Newton Conjugate Gradient (NCG) method with the global convergence of three nature-inspired (NI) optimization approaches: genetic algorithm, differential evolution, and particle-swarm. In this Python-implemented approach, augmenting the locally-convergent NCG with one of the globally-convergent methods ensures the quality, robustness, and automation of curve-fitting. After comparing the methods, we establish that given an initial data-derived guess, each finds a solution with the same chi-square- a measurement of the agreement of the fit to the data. NCG is the fastest method, so it is the first to attempt data-fitting. The curve-fitting procedure escalates to one of the globally-convergent NI methods only if NCG fails, thereby ensuring a successful fit. This method allows for the most optimal signal fit and can be easily applied to similar problems.

Terzic, Balsa↗

Systems and methods for hierarchical multi-objective optimization

A method for optimizing objective functions can include selecting an objective function based at least on a hierarchy, applying parameters to the objective function to generate an output, responsive to the output not satisfying a tolerance condition, assigning a penalty to the set of parameters and evaluating a convergence condition using the set of parameters and the penalty, responsive to the output satisfying the tolerance condition, evaluating an additional objective function using the parameters in an order corresponding to the hierarchy or evaluating the convergence condition responsive to the selected objective function being a final objective function, modifying the set of parameters using a genetic algorithm responsive to the set of parameters not satisfying the convergence condition, and outputting the set of parameters responsive to the set of parameters satisfying the convergence condition.

Chan, Henry↗

Heat Exchangers Circuitry Optimization using Low-GWP Refrigerants in Reversible Heat Pump Applications

Tube-fin heat exchangers (TFHX) are widely used in heat pump applications. Circuitry optimization can improve system performance. Previous optimizations focus on improving component-level performance under a specific operating condition, i.e., the TFHX either works as a condenser or an evaporator. The optimal circuitry obtained under air conditioning (AC) mode cannot guarantee optimal performance when used in heat pump (HP) mode. This study implements a bi-objective formulation to achieve optimal system performance in both AC and HP modes. An integer permutation-based Genetic Algorithm is integrated with Heat Pump Design Model (HPDM) to perform heat pump optimization. Six refrigerants, i.e., R410A, R452B, R454B, R32, D2Y60 and L41a are investigated. Case studies show that optimal heat exchangers yield 2.1%-6.1% EER improvement under AC mode and 1.9%-8.5% COP improvement under HP mode. Use of this design approach can help assure a preferable performance of reversible heat pumps during both cooling and heating mode usage.

Li, Zhenning↗