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At least 1,099 records · Page 61
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

AmeriFlux MX-Tes Tesopaco, secondary tropical dry forest

This is the AmeriFlux version of the carbon flux data for the site MX-Tes Tesopaco, secondary tropical dry forest. Site Description - This tower was located in the "Ejido la Estrella" where the eddy covariance tower is located 7.5 km east of the town Rosario de Tesopaco, in southeastern Sonora, Mexico. The tower was positioned in the center of a homogeneous flat terrain at the foothills of the Madre Occidental. This ecosystem lies in a highly seasonal region under the influence of the North American Monsoon that brings about 70% of the rains from July to September. The site is dominated by leguminous trees. Some of the dominant species are Lysiloma divaricatum, Ipomoea arborescens, Acacia cochliacantha, Haematoxylum brasiletto, and Celtis reticulata. The mean basal area at the study site is 14.83 ± 3.3m2 ha-1, and the aboveground biomass is estimated to be 43.20±9.5Mgha-1. These values and the high counts of Acacia cochliacantha indicate that the area is a secondary forest with significant management activities in the past.

Yepez, Enrico A.↗
DOE OSTI2022

AmeriFlux CL-SDF Senda Darwin Forest

This is the AmeriFlux version of the carbon flux data for the site CL-SDF Senda Darwin Forest. Site Description - Located at the Senda Darwin Biological Station, in a old-growth rainforest. Locally named as Nordpatagonian type of forest. The station is 15 km east of Ancud, in the Chiloé Island, close to the Huicha river.

Perez-Quezada, Jorge↗
DOE OSTI2022

AmeriFlux FLUXNET-1F CA-SF1 Saskatchewan - Western Boreal, forest burned in 1977

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site CA-SF1 Saskatchewan - Western Boreal, forest burned in 1977. This is the FLUXNET version of the carbon flux data for the site CA-SF1 Saskatchewan - Western Boreal, forest burned in 1977 produced by applying the standard ONEFlux (1F) software. Site Description - Regenerated jack pine (Pinus banksiana) following fire in 1977; canopy height 6 m and LAI = 2.8. Some black spruce understory developing. Trees tend to be clumpy, with some clear spaces that can be easily walked thorugh, and other areas are thick. Fire killed coarse woody debris on the ground, that is soft and decomposing. Very few perched trunks. Understory are short shrubs such as Vaccinium and Arctostaphylus uva-ursi.

Amiro, Brian↗
DOE OSTI2023

AmeriFlux FLUXNET-1F CA-SF2 Saskatchewan - Western Boreal, forest burned in 1989

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site CA-SF2 Saskatchewan - Western Boreal, forest burned in 1989. This is the FLUXNET version of the carbon flux data for the site CA-SF2 Saskatchewan - Western Boreal, forest burned in 1989 produced by applying the standard ONEFlux (1F) software. Site Description - Amiro_et_al_2006, AFM/136:...The 1989 burn site (F89) was northeast of Prince Albert National Park, Saskatchewan, with the humancaused fire covering 13,500 ha. Parts of the area had been logged prior to the fire, and slash residues would have been burned in some locations. Parts of the area were aerially seeded with jack pine seeds in the winter of 1990. The present tree canopy was composed of balsam poplar (Populus balsamifera L.), jack pine, trembling aspen, and birch (Betula papyrifera Marsh.) and prior to the fire, the stand consisted of these same species aswell asblack spruce.Deadsnags of black spruce and jack pinewere still standing, althoughmost had fallen over and formed a leaningmix of dry, dead tree boles. The understory vegetation consisted mostly of black spruce saplings, saplings of the tree overstory species, bearberry, blueberry (Vaccinium myrtilloides Michx.), raspberry (Rubus idaeus L.), rose (Rosa acicularis Lindl.), bunchberry (Cornus canadensis L.), and reed grass (Calamagrostis canadensis (Michx.) Nutt.).

Amiro, Brian↗
DOE OSTI2025

AmeriFlux CL-ACF Alerce Costero Forest

This is the AmeriFlux version of the carbon flux data for the site CL-ACF Alerce Costero Forest. Site Description - Tower located in an old-growth coniferous rainforest (~300 years) at the Alerce Costero National Park. The forest is locally known as Alerce type. More information at: https://jbarichivich.github.io/page_acos.html

Lara, Antonio [Universidad Austral de Chile]↗
DOE OSTI2025

AmeriFlux FLUXNET-1F US-CRK Davy Crockett National Forest

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-CRK Davy Crockett National Forest. This is the FLUXNET version of the carbon flux data for the site US-CRK Davy Crockett National Forest produced by applying the standard ONEFlux (1F) software. Site Description - Shortleaf pine, mature

Noormets, Asko [Texas A&M University]↗
DOE OSTI2026

AmeriFlux FLUXNET-1F CA-SJ2 Saskatchewan - Western Boreal, Jack Pine forest harvested in 2002

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site CA-SJ2 Saskatchewan - Western Boreal, Jack Pine forest harvested in 2002. This is the FLUXNET version of the carbon flux data for the site CA-SJ2 Saskatchewan - Western Boreal, Jack Pine forest harvested in 2002 produced by applying the standard ONEFlux (1F) software. Site Description - 53.944737° N, 104.649340° W, BERMS flux and climate measurements to begin by Mar 2003

Barr, Alan [Global Institute for Water Security, U↗
DOE OSTI2023

Science Plan for the Deployment of the Third ARM Mobile Facility to the Southeastern United States at the Bankhead National Forest, Alabama (AMF3 BNF)

In 2018, the U.S. Department of Energy (DOE) held a workshop for the Atmospheric Radiation Measurement (ARM) (Mather and Voyles 2013) user facility to discuss critical climate challenges and locations where key ARM Mobile Facility (AMF) observational assets could impact Earth system modeling (ESM). As an outcome, the southeast United States (SE U.S.) was identified as a high-priority region to target climate-process studies that promote a deeper understanding of the climate system and bolster ARM interactions with the community to drive ESM advancement. The DOE ARM user facility is a globally recognized leader in deploying and operating strategically located observation sites around the world for studying the properties of aerosols and clouds and their interaction with radiation, precipitation, and the Earth’s surface. In partnering with the DOE Atmospheric System Research (ASR) program, ARM solicited a multi-agency Site Science Team approach to provide input and close interaction with ARM management towards a successful SE U.S. deployment of the ARM third Mobile Facility (AMF3) (Miller et al. 2016). These efforts included identifying key locations, science drivers and instruments, and measurement strategies to address the wider climate-process needs and ESM improvement. Community input served a vital role in establishing, refining, and informing the relevant drivers and decisions regarding this AMF3 deployment. The team has identified Northern Alabama (N. AL) as regionally representative to unlock the key opportunities that will improve our understanding and model representation of aerosol, cloud, and land-surface processes and their couplings in the SE U.S. A defining aspect of the AMF3 deployment is its commitment to long-term (anticipated five-year) observations to mitigate potential seasonal-to-annual variability that often limits appropriate attribution of phenomena to local or larger-scale processes. The proposed location may leverage nearby surface networks and multi-agency and partner assets to enrich this multi-year deployment. One motivation is to understand the role of spatiotemporal variability (thermodynamic, land-surface) across aspects of the climate system, with our AMF3 team anticipating future demands on characterizing the relationships between local-to-regional cloud development and surface processes across a diverse patchwork of natural, managed, and urban landscapes as found throughout the N. AL regions. The main site targets an intact, representative, forested region – the Bankhead National Forest (BNF) – underscoring further team commitment to regionally important land-atmosphere two-way interactive studies “from the canopy to the clouds”, with enhanced tower instrumentation augmenting traditional ARM capabilities adjacent to this site. Multiple supplemental sites will also be distributed across this region, prioritizing added needs for biodiversity. Anticipated high-priority cloud science themes will target N. AL as a regional SE U.S. hotbed for high-impact weather, convective cloud onset, and shallow-to-deep cloud transitioning. Anticipated aerosol drivers will focus on chemical processes that control the evolution of organic aerosol, the seasonality and spatial distribution of water vapor and particle-phase water, and its role on aerosol optical properties. Anticipated land-atmosphere drivers consider the two-way feedbacks between surface influence on aerosols, clouds, and precipitation properties and the associated radiative impacts on plant physiology and canopy-scale fluxes. Emphasis will include the study of the impact of surface processes on aerosols via precursor emission, and on clouds via moisture flux and thermal development.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Core Model Proposal #338: Regional Forest Markets and Crop Trade Updates

The main purpose of this proposal is to update the forest (i.e., Roundwood) trade modeling in GCAM from HOV (Heckscher-Ohlin Vanek) based fully integrated world market to segmented regional markets using the logit-based Armington approach. We also improve agricultural trade-related data, update trade (Armington) parameters based on literature information, and allow elastic forest demand responses. This CMP is an extension of previous GCAM agricultural trade CMPs (289 & 312).

99 GENERAL AND MISCELLANEOUS↗
DOE OSTI2024

Differential Organic Carbon Mineralization Responses to Soil Moisture in Three Different Soil Orders Under Mixed Forested System: Supporting Data

This data contains data from 90-day long incubation study which aimed to look at the soil moisture-texture relationship on soil organic carbon (SOC) cycling. Soils were collected from three distinct soil textures from mixed forests in 2017: sandy (Georgia, 2017-05-01), loamy (Missouri, 2017-06-14) and clayey (Texas, December 2017) were incubated at different soil moisture levels (air-dried, 25% water holding capacity (WHC), 50% WHC, 100% WHC and 175% WHC) at room temperature for a period of 90 days. Files contain microbial respiration, active and slow SOC pools, and their respective mineralization rates, extractable organic carbon (C), and C-acquiring extracellular enzymes. Findings from these data were used in Singh et al. (2021). This study aimed to examine the interactive effect of soil moisture and texture on SOC mineralization. Soil samples of three distinct textures (sandy, loamy, and clayey) were collected from mixed forests of Georgia, Missouri, and Texas, respectively. Soil cores of 5 cm diameter were collected from numerous random locations at each site from 0-15 cm depth after scraping the litter layer and mixed thoroughly to obtain a composite sample per site. Three additional soil cores were collected to determine the WHC using pressure plate extractors. Soil samples were composited, and triplicate soil samples were incubated in mason jars for a period of 90 days at room temperature under different moisture regimes: air dried, 25% WHC, 50% WHC, at WHC and 100% saturation. Soil respiration was measured weekly, and destructive sampling was conducted at 1, 15, 60, and 90 days to determine extractable organic C, C acquiring enzyme activity, and active and slow SOC pools with their respective mineralization rates. The C acquiring enzyme activity was the total activity of α-glucosidase, β-glucosidase, cellobiohydrolase, and β-xylosidase enzymes. Gas samples for microbial respiration measurements were collected from headspace of incubation jars through the sampling ports on the lids and then analyzed using a Shimadzu Gas Chromatograph (GC-2014). Prior to sampling, the vials were evacuated. Blank correction was also done by collecting gas samples from empty incubation jars. Double pool exponential decay model was used in SigmaPlot to determine the active and slow SOC pools and their mineralization rates (Farrar et al., 2012; Jagadamma et al., 2014). The C-acquiring extracellular enzymes were measured using the microplate method by German et al., (2011). Microbial community structure was determined using the phospholipid fatty acid (PLFA) and neutral lipid fatty acid (NLFA) analyses (Buyer and Sasser, 2012). This dataset has seven data files provided in comma-separate (*.csv) format. Additional metadata are provided: seven data dictionaries and a file-level metadata file in comma separate (*.csv) format and a user guide in PDF (*.pdf) format.

Carbon acquiring enzyme activity↗
DOE OSTI2021

The Transcriptional Response of Soil Bacteria to Long-Term Warming and Short-Term Seasonal Fluctuations in a Terrestrial Forest

Terrestrial ecosystems are an important carbon store, and this carbon is vulnerable to microbial degradation with climate warming. After 30 years of experimental warming, carbon stocks in a temperate mixed deciduous forest were observed to be reduced by 30% in the heated plots relative to the controls. In addition, soil respiration was seasonal, as was the warming treatment effect. We therefore hypothesized that long-term warming will have higher expressions of genes related to carbohydrate and lipid metabolism due to increased utilization of recalcitrant carbon pools compared to controls. Because of the seasonal effect of soil respiration and the warming treatment, we further hypothesized that these patterns will be seasonal. We used RNA sequencing to show how the microbial community responds to long-term warming (~30 years) in Harvard Forest, MA. Total RNA was extracted from mineral and organic soil types from two treatment plots (+5°C heated and ambient control), at two time points (June and October) and sequenced using Illumina NextSeq technology. Treatment had a larger effect size on KEGG annotated transcripts than on CAZymes, while soil types more strongly affected CAZymes than KEGG annotated transcripts, though effect sizes overall were small. Although, warming showed a small effect on overall CAZymes expression, several carbohydrate-associated enzymes showed increased expression in heated soils (~68% of all differentially expressed transcripts). Further, exploratory analysis using an unconstrained method showed increased abundances of enzymes related to polysaccharide and lipid metabolism and decomposition in heated soils. Compared to long-term warming, we detected a relatively small effect of seasonal variation on community gene expression. Together, these results indicate that the higher carbohydrate degrading potential of bacteria in heated plots can possibly accelerate a self-reinforcing carbon cycle-temperature feedback in a warming climate.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Detection of Extreme Phenomena in the Stable Boundary Layer over the Amazonian Forest

We apply different methods for detection of extreme phenomena (EP) in air-turbulent time series measured in the nocturnal boundary layer above the Amazon forest. The methods used were: (a) a Morlet complex wavelet transform, which is often used in analysis of non-linear application processes. Through the use of the wavelet, it is possible to observe a phase singularity that involves a strong interaction between an extensive range of scales; (b) recurrence plot tests, which were used to identify a sudden change between different stable atmospheric states. (c) statistical analysis of early-warning signals, which verify simultaneous increases in the autocorrelation function and in the variance in the state variable; and (d) analysis of wind speed versus turbulent kinetic energy to identify different turbulent regimes in the stable boundary layer. We found it is adequate to use a threshold to classify the cases of strong turbulence regime, as a result of the occurrence of EP in the tropical atmosphere. All methods used corroborate and indicate synergy between events that culminate in what we classify as EP of the stable boundary layer above the tropical forest.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Random Forests as a Viable Method to Select and Discover High-redshift Quasars

We present a method of selecting quasars up to redshift ≈6 with random forests, a supervised machine-learning method, applied to Pan-STARRS1 and WISE data. We find that, thanks to the increasing set of known quasars, we can assemble a training set that enables supervised machine-learning algorithms to become a competitive alternative to other methods up to this redshift. We present a candidate set for the redshift range 4.8–6.3, which includes the region around z = 5.5 where selecting quasars is difficult due to their photometric similarity to red and brown dwarfs. We demonstrate that, under our survey restrictions, we can reach a high completeness (66% ± 7% below redshift 5.6/83{sub -9}{sup +6}% above redshift 5.6) while maintaining a high selection efficiency (78{sub -8}{sup +10}%/94{sub -8}{sup +5}%). Our selection efficiency is estimated via a novel method based on the different distributions of quasars and contaminants on the sky. The final catalog of 515 candidates includes 225 known quasars. We predict the candidate catalog to contain additional 148{sub -33}{sup +41} new quasars below redshift 5.6 and 45{sub -8}{sup +5} above, and we make the catalog publicly available. Spectroscopic follow-up observations of 37 candidates led us to discover 20 new high redshift quasars (18 at 4.6 ≤ z ≤ 5.5, 2 z ~ 5.7). These observations are consistent with our predictions on efficiency. We argue that random forests can lead to higher completeness because our candidate set contains a number of objects that would be rejected by common color cuts, including one of the newly discovered redshift 5.7 quasars.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

TARDIS. I. A Constrained Reconstruction Approach to Modeling the z ~ 2.5 Cosmic Web Probed by Lyα Forest Tomography

Recent Lyα forest tomography measurements of the intergalactic medium (IGM) have revealed a wealth of cosmic structures at high redshift (z ~ 2.5). In this work, we present the Tomographic Absorption Reconstruction and Density Inference Scheme (TARDIS), a new chronocosmographic analysis tool for understanding the formation and evolution of these observed structures. Here, we use maximum likelihood techniques with a fast nonlinear gravitational model to reconstruct the initial density field of the observed regions. We find that TARDIS allows accurate reconstruction of smaller-scale structures than standard Wiener-filtering techniques. Applying this technique to mock Lyα forest data sets that simulate ongoing and future surveys such as CLAMATO, Subaru PFS, or the ELTs, we are able to infer the underlying matter density field at observed redshift and classify the cosmic web structures. We find good agreement with the underlying truth in both the characteristic eigenvalues and eigenvectors of the pseudo-deformation tensor, with the eigenvalues inferred from 30 m class telescopes correlated at r = 0.95 relative to the truth. As an output of this method, we are able to further evolve the inferred structures to late time (z = 0) and also track the trajectories of coeval z = 2.5 galaxies to their z = 0 cosmic web environments.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Measurements of Effective Optical Depth in the Lyα Forest from the BOSS DR12 Quasar Sample

We measure the effective optical depth in the Lyα forest using 40,035 quasar spectra from the Twelfth Data Release (DR12) of the Baryon Oscillation Spectroscopic Survey of Sloan Digital Sky Survey IV. A rigorous selection based on spectral index and the equivalent width of the C iv emission line is applied to choose seven uniform samples with minimal intrinsic variations across redshifts. Modeling the redshift evolution of the effective optical depth with a power law, ${\tau }_{\mathrm{eff}}={\tau }_{0}{(1+z)}^{\gamma },$ produces ${\tau }_{0}=(5.54\pm 0.64)\times {10}^{-3}$ and $\gamma =3.182\pm 0.074$. The 2.2% precision estimate on γ is dominated by systematic errors, likely arising from the bias and uncertainties in spectral index estimates. Even after incorporating the systematic errors, this work provides the most precise estimates of optical depth parameters to date. Finally, using the reconstructed Lyα forest continuum to directly measure the transmitted flux ratio as a function of redshift, we find deviations of less than 2.5% from the predictions from the global model and no convincing evidence for signal associated with He ii reionization.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

TARDIS. II. Synergistic Density Reconstruction from Lyα Forest and Spectroscopic Galaxy Surveys with Applications to Protoclusters and the Cosmic Web

Looking at this work, we expand upon the Tomographic Absorption Reconstruction and Density Inference Scheme (TARDIS) in order to include multiple tracers while reconstructing matter density fields at Cosmic Noon (z ~ 2–3). In particular, we jointly reconstruct the underlying density field from simulated Lyα forest observations at z ~ 2.5 and an overlapping galaxy survey. We find that these data are synergistic, with the Lyα forest providing reconstruction of low-density regions and galaxy surveys tracing the density peaks. We find a more accurate power spectra reconstruction going to higher scales when fitting these two data sets simultaneously than when using either one individually. When applied to cosmic web analysis, we find that performing the joint analysis is equivalent to an Lγα survey with significantly increased sight-line spacing. Because we reconstruct the velocity field and matter field jointly, we demonstrate the ability to evolve the mock observed volume further to z = 0, allowing us to create a rigorous definition of a “protocluster” as regions that will evolve into clusters. We apply our reconstructions to study protocluster structure and evolution, finding for realistic survey parameters that we can provide accurate mass estimates of the z ≈ 2 structures and their z = 0 fate.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Fast, High-fidelity Lyα Forests with Convolutional Neural Networks

Full-physics cosmological simulations are powerful tools for studying the formation and evolution of structure in the universe but require extreme computational resources. Here, we train a convolutional neural network to use a cheaper N-body-only simulation to reconstruct the baryon hydrodynamic variables (density, temperature, and velocity) on scales relevant to the Lyα forest, using data from Nyx simulations. We show that our method enables rapid estimation of these fields at a resolution of ~20 kpc, and captures the statistics of the Lyα forest with much greater accuracy than existing approximations. Because our model is fully convolutional, we can train on smaller simulation boxes and deploy on much larger ones, enabling substantial computational savings. Furthermore, as our method produces an approximation for the hydrodynamic fields instead of Lyα flux directly, it is not limited to a particular choice of ionizing background or mean transmitted flux.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Impact of Self-shielding Minihalos on the Lyα Forest at High Redshift

Abstract Dense gas in minihalos with masses of 10 6 −10 8 M ⊙ can shield themselves from reionization for ∼100 Myr after being exposed to the UV background. These self-shielded systems, often unresolved in cosmological simulations, can introduce strong absorption in quasar spectra. This paper is the first systematic study on the impact of these systems on the Ly α forest. We first derive the H i column density profile of photoevaporating minihalos by conducting 1D radiation–hydrodynamics simulations. We utilize these results to estimate the Ly α opacity from minihalos in a large-scale simulation that cannot resolve self-shielding. When the ionization rate of the background radiation is 0.03 × 10 −12 s −1 , as expected near the end of reionization at z ∼ 5.5, we find that the incidence rate of damped Ly α absorbers increases by a factor of ∼2−4 compared to at z = 4.5. The Ly α flux is, on average, suppressed by ∼3% of its mean due to minihalos. The absorption features enhance the 1D power spectrum up to ∼5% at k ∼ 0.1 h Mpc −1 (or 10 −3 km −1 s), which is comparable to the enhancement caused by inhomogeneous reionization. The flux is particularly suppressed in the vicinity of large halos along the line-of-sight direction at separations of up to 10 h −1 Mpc at r ⊥ ≲ 2 h −1 Mpc. However, these effects become much smaller for higher ionizing rates (≳0.3 × 10 −12 s −1 ) expected in the post-reionization Universe. Our findings highlight the need to consider minihalo absorption when interpreting the Ly α forest at z ≳ 5.5. Moreover, the sensitivity of these quantities to the ionizing background intensity can be exploited to constrain the intensity itself.

79 ASTRONOMY AND ASTROPHYSICS↗