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DOE OSTI2025

Evaluation of data driven low-rank matrix factorization for accelerated solutions of the Vlasov equation

Low-rank methods have shown success in accelerating simulations of a collisionless plasma described by the Vlasov equation, but still rely on computationally costly linear algebra every time step. We propose a data-driven factorization method using artificial neural networks, specifically with convolutional layer architecture, that trains on existing simulation data. At inference time, the model outputs a low-rank decomposition of the distribution field of the charged particles, and we demonstrate that this step is faster than the standard linear algebra technique. Numerical experiments show that the method achieves comparable reconstruction accuracy for interpolation tasks, generalizing to unseen test data in a manner beyond just memorizing training data; patterns in factorization also inherently followed the same numerical trend as those within algebraic methods (e.g., truncated singular-value decomposition). However, when training on the first 70% of a time-series data and testing on the remaining 30%, the method fails to meaningfully extrapolate. Despite this limiting result, the technique may have benefits for simulations in a statistical steady-state or otherwise showing temporal stability. These results suggest that while the model offers a computationally efficient alternative for datasets with temporal stability, its current formulation is best suited for interpolation rather than for predicting future states in time-evolving systems. This study thus lays the groundwork for further refinement of neural network-based approaches to low-rank matrix factorization in high-dimensional plasma simulations.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2022

Graph-based featurization methods for classifying small molecule compounds

For over a decade, drug-induced liver injury (DILI) has posed significant drawbacks in the synthesis and development of drugs and remains a consequential concern. With finite success within the existing preclinical models, DILI is one of the main causes of drug withdrawal or termination from the market. Particularly, this withdrawal occurs during the late stages of drug development (Kullak-Ublick, 2017). Since DILI is difficult to diagnose and treat, it has become an obstacle in the drug production market that in turn affects clinicians, pharmaceutical companies, and consumers. We propose a method for learning features of DILI-positive drugs based on the graphical relationships and patterns they possess within a network of biological databases. We also train various statistical and machine learning models on these learned features in order to classify the drugs as DILI-positive or negative. Our methods include Random Forest, Neural networks, and logistic regression classification. We utilize labeled DILI-positive and DILI-negative datasets, which were developed by the FDA and the National center for toxicological research, as well as additional literature datasets (Thakkar, 2020) in order to validate our results and assess our featurization and model accuracy.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2023

Wave-function-based emulation for nucleon-nucleon scattering in momentum space

Emulators for low-energy nuclear physics can provide fast and accurate predictions of bound-state and scattering observables for applications that require repeated calculations with different parameters, such as Bayesian uncertainty quantification. In this paper, we extend a scattering emulator based on the Kohn variational principle (KVP) to momentum space (including coupled channels) with arbitrary boundary conditions, which enable the mitigation of spurious singularities known as Kohn anomalies. We test it on a modern chiral nucleon-nucleon (N N) interaction, including emulation of the coupled channels. We provide comparisons between a Lippmann-Schwinger equation emulator and our KVP momentum-space emulator for a representative set of neutron-proton (n p) scattering observables, and also introduce a quasi-spline-based approach for the KVP-based emulator. Furthermore, our findings show that while there are some trade-offs between accuracy and speed, all three emulators perform well. Self-contained Jupyter notebooks that generate the results and figures in this paper are publicly available.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

NASA NTRSDate not supplied

Statistical Classification of Biosignature Information using Multiple Instrument Observations

The accurate identification of biosignatures (indications of life) from data taken from remote or in situ planetary exploration is one of the most important challenges in astrobiology, the interdisciplinary field examining habitability and the potential for extraterrestrial life. This study employs machine learning algorithms to optimize the identification of biosignatures, with an emphasis on those which are agnostic to a specific biochemical basis. We exploit the wealth of terrestrial data available from biogenic and abiogenic systems to enhance efficient feature prioritization. Our dataset, pulled from public databases and laboratory recorded measurements, includes elemental abundance, isotopic fractionation, and VNIR/Raman spectra The data curation process included standardization for detection limits and ranges. Subsequent feature extraction yielded detailed inputs for machine learning, including combinations of elemental content, isotopic ratios, and parameters of spectral peaks and troughs. Feature significance was evaluated across diverse machine learning methodologies, such as k-nearest neighbors, logistic regression, Random Forest, support vector machines, and Gaussian Naïve Bayes, along with a combined voting classifier. We utilized Receiver Operating Characteristic Area Under the Curve (ROC AUC) across 2,000 50% test-train splits as a robust metric of model performance. Results revealed a promising ROC AUC of 0.853 for the combined voting classifier. Removing elemental abundance data notably reduced model accuracy (13% decrease in AUC), highlighting its critical role in biosignature detection. Several other individual data features exhibited significance within their respective data types, offering additional granularity. This research fortifies the relevance of machine learning to astrobiology, potentially enhancing life detection missions by allowing algorithmic prioritization of high-interest samples for further investigation. Future work will refine data standardization, expand the dataset to include more terrestrial systems, and incorporate convolutional neural networks for spectral feature extraction. The potential for public data sharing is also under exploration, reinforcing our commitment to collective scientific advancement.

Statistical↗

NASA NTRS1978

Detailed gravity anomalies from GEOS-3 satellite altimetry data

A technique for deriving mean gravity anomalies from dense altimetry data was developed. A combination of both deterministic and statistical techniques was used. The basic mathematical model was based on the Stokes' equation which describes the analytical relationship between mean gravity anomalies and geoid undulations at a point; this undulation is a linear function of the altimetry data at that point. The overdetermined problem resulting from the excessive altimetry data available was solved using Least-Squares principles. These principles enable the simultaneous estimation of the associated standard deviations reflecting the internal consistency based on the accuracy estimates provided for the altimetry data as well as for the terrestrial anomaly data. Several test computations were made of the anomalies and their accuracy estimates using GOES-3 data.

Gopalapillai, G. S.↗

NASA NTRS2021

Assimilation of Lidar Planetary Boundary Layer Height Observations

Lidar backscatter and wind retrievals of the planetary boundary layer height (PBLH) are assimilated into 22 hourly forecasts from the NASA Unified - Weather and Research Forecast (NU-WRF) model during the Plains Elevated Convection Convection at Night (PECAN) campaign on July 11, 2015 in Greensburg, Kansas, using error statistics collected from the model profiles to compute the necessary covariance matrices. Two separate forecast runs using different PBL physics schemes were employed, and comparisons with 6 independent radiosonde profiles were made for each run. Both of the forecast runs accurately predicted the PBLH and the state variable profiles within the planetary boundary layer during the early morning, and the assimilation had a small impact during this time. In the late afternoon, the forecast runs showed decreased accuracy as the convective boundary layer developed. However, assimilation of the Doppler lidar PBLH observations were found to improve the temperature and V velocity profiles relative to independent radiosonde profiles. Water vapor was overcorrected, leading to increased differences with independent data. Errors in the U velocity were made slightly larger. The computed forecast error covariances between the PBLH and state variables were found to rise in the late afternoon, leading to the larger improvements in the afternoon. This work represents the first effort to assimilate PBLH into forecast states using ensemble methods.

Andrew Tangborn↗

DOE OSTI2024

Scenario Planning Management Actions to Restore Cold Water Stream Habitat: Comparing Mechanistic and Statistical Modeling Approaches

ABSTRACT Under the United States Clean Water Act, states are required to periodically assess state waters to determine compliance with water quality criteria (including temperature) and then to develop total maximum daily loads (TMDLs) for impaired waters as necessary to bring them into compliance. We compared the performance of mechanistic stream temperature models (HeatSource, QUAL2K, and QUAL2Kw) applied to the mainstem of three TMDL watersheds (Middle Fork John Day, OR; Wind River, WA; South Fork Nooksack, WA) with that of spatial stream network (SSN) models applied to the full watersheds and used these to evaluate the potential effectiveness of restoration strategies. SSN models performed well with slightly lesser accuracy (RMSE = 0.47–0.87) for mainstem predictions than mechanistic models (RMSE = 0.4) but provided additional benefits to inform management, including information on spatial and temporal heterogeneity of restoration effectiveness throughout the watershed. Of the four scenarios considered (restoration of riparian zones to potential natural vegetation, channel narrowing, increasing flow by restricting irrigation withdrawals, and combined applications), riparian zone restoration was consistently the most effective in reducing temperatures at the outlet, mainstem, and throughout the watersheds. Predicted restoration effectiveness for thermal regimes varied significantly both within and among watersheds. A focus on water quality criteria exceedance only at the watershed outlet or along the mainstem reach can obscure knowledge of restoration potential for fish habitat in tributaries and headwaters, potential for creation of thermal refuge areas along the mainstem critical for maintaining migration corridors, and thermal regime heterogeneity across space and time.

Fuller, M. R.↗

DOE OSTI2021

Learning-Based Real-Time Event Identification Using Rich Real PMU Data

A large-scale deployment of phasor measurement units (PMUs) that reveal the inherent physical laws of power systems from a data perspective enables an enhanced awareness of power system operation. However, the high-granularity and non-stationary nature of PMU data and imperfect data quality could bring great technical challenges for real-time system event identification. To address these challenges, this paper proposes a two-stage learning-based framework. In the first stage, a Markov transition field (MTF) algorithm is exploited to extract the latent data features by encoding temporal dependency and transition statistics of PMU data in graphs. Then, a spatial pyramid pooling (SPP)-aided convolutional neural network (CNN) is established to efficiently and accurately identify power events. The proposed method fully builds on and is also tested on a large real-world dataset from several tens of PMU sources (and the corresponding event logs), located across the U.S., with a time span of two consecutive years. We report the numerical results validate that our method has high identification accuracy while showing good robustness against poor data quality.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2024

A precise measurement of the Z -boson double-differential transverse momentum and rapidity distributions in the full phase space of the decay leptons with the ATLAS experiment at $\sqrt{s}=8$ TeV

This paper presents for the first time a precise measurement of the production properties of the Z boson in the full phase space of the decay leptons. This is in contrast to the many previous precise unfolded measurements per formed in the fiducial phase space of the decay leptons. The measurement is obtained from proton–proton collision data collected by the ATLAS experiment in 2012 at $\sqrt{s}$ = 8 TeV at the LHC and corresponding to an integrated luminosity of 20.2 fb -1 . The results, based on a total of 15.3 million Z boson decays to electron and muon pairs, extend and improve a previous measurement of the full set of angular coefficients describing Z-boson decay. The double-differential cross section distributions in Z-boson transverse momentum pT and rapidity y are measured in the pole region, defined as 80 < m ℓℓ < 100 GeV, over the range |y| < 3.6. The total uncertainty of the normalised cross-section measurements in the peak region of the pT distribution is dominated by statistical uncertainties over the full range and increases as a function of rapidity from 0.5–1.0% for |y| < 2.0 to 2 - 7% at higher rapidities. The results for the rapidity-dependent transverse momentum distributions are compared to state of-the-art QCD predictions, which combine in the best cases approximate N 4 LL resummation with N 3 LO fixed-order per turbative calculations. The differential rapidity distributions integrated over pT are even more precise, with accuracies from 0.2–0.3% for |y| < 2.0 to 0.4–0.9% at higher rapidities, and are compared to fixed-order QCD predictions using the most recent parton distribution functions. The agreement between data and predictions is quite good in most cases.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

NASA NTRS1979

Differences between measured and linearly interpolated synoptic variables over a 12-h period during AVE 4

Results of analyses revealed that nonlinear changes or differences formed centers or systems, that were mesosynoptic in nature. These systems correlated well in space with upper level short waves, frontal zones, and radar observed convection, and were very systematic in time and space. Many of the centers of differences were well established in the vertical, extending up to the tropopause. Statistical analysis showed that on the average nonlinear changes were larger in convective areas than nonconvective regions. Errors often exceeding 100 percent were made by assuming variables to change linearly through a 12-h period in areas of thunderstorms, indicating that these nonlinear changes are important in the development of severe weather. Linear changes, however, accounted for more and more of an observed change as the time interval (within the 12-h interpolation period) increased, implying that the accuracy of linear interpolation increased over larger time intervals.

Dupuis, L. R.↗

NASA NTRS1985

Optimum strategies and performance for the remote sensing of path-delay using ground-based microwave radiometers

Computer simulations were used to study the accuracy of remotely sensed microwave radiometer measurements of excess radio propagation path delay due to atmospheric water vapor. A number of strategies were investigated for remote sensing of path delay in order to define baseline parameters for the design of water vapor radiometers (WVRs) in geodetic applications. Strategies were judged according to their retrieval performance in a variety of climatological regions. An observing approach using the frequency 20.7/22.2/31.4 Gz was found to be close to optimum. A statistical retrieval approach using retrieval coefficients stratified for clear and cloudy weather was identified as a substantial improvement over conventional single-set all-weather retrieval strategies. It is shown that a reasonably well optimized WVR with an estimated calibration uncetainty of 0.5 K can achieve an overall retrieval performance of 0.27 cm in clear weather; and 0.51 cm in cloudy weather. The weather-averaged retrieval performance for individual locations was found to vary by no more than 14 percent from the average for all locations despite a mean path delay of 5 to 26 cm.

Gary, B. L.↗

NASA NTRS1990

Cosmic instability from radiation pressure

The Cosmic Background Explorer has recently confirmed the blackbody character of the microwave background to high accuracy (Mather et al., 1990), and will have the capability to detect other cosmic backgrounds throughout the infrared. A detection of cosmic background radiation dating from the pregalactic era would have important consequences for theories of cosmic structure. During the creation of such a background the pressure of the radiation itself causes an instability which leads inevitably to the growth of large-scale structure in the matter distribution. In contrast to conventional gravitational-instability models, the statistical properties of this structure are determined primarily by the self-organizing dynamics of the instability rather than details of cosmological initial conditions. The behavior of the instability is described here.

Hogan, Craig J.↗

NASA NTRS1998

The Locations of Gamma-Ray Bursts Measured by Comptel

The COMPTEL instrument on the Compton Gamma Ray Observatory is used to measure the locations of gamma-ray bursts through direct imaging of MeV photons. In a comprehensive search, we have detected and localized 29 bursts observed between 1991 April 19 and 1995 May 31. The average location accuracy of these events is 1.25 deg (1 sigma), including a systematic error of approx. 0.5 deg, which is verified through comparison with Interplanetary Network (IPN) timing annuli. The combination of COMPTEL and IPN measurements results in locations for 26 of the bursts with an average "error box" area of only approx. 0.3 deg (1 sigma). We find that the angular distribution of COMPTEL burst locations is consistent with large-scale isotropy and that there is no statistically significant evidence of small-angle autocorrelations. We conclude that there is no compelling evidence for burst repetition since no more than two of the events (or approx. 7% of the 29 bursts) could possibly have come from the same source. We also find that there is no significant correlation between the burst locations and either Abell clusters of galaxies or radio-quiet quasars. Agreement between individual COMPTEL locations and IPN annuli places a lower limit of approx. 100 AU (95% confidence) on the distance to the stronger bursts.

Kippen, R. Marc↗

NASA NTRS2010

Toward Malaria Risk Prediction in Afghanistan Using Remote Sensing

Malaria causes more than one million deaths every year worldwide, with most of the mortality in Sub-Saharan Africa. It is also a significant public health concern in Afghanistan, with approximately 60% of the population, or nearly 14 million people, living in a malaria-endemic area. Malaria transmission has been shown to be dependent on a number of environmental and meteorological variables. For countries in the tropics and the subtropics, rainfall is normally the most important variable, except for regions with high altitude where temperature may also be important. Afghanistan s diverse landscape contributes to the heterogeneous malaria distribution. Understanding the environmental effects on malaria transmission is essential to the effective control of malaria in Afghanistan. Provincial malaria data gathered by Health Posts in 23 provinces during 2004-2007 are used in this study. Remotely sensed geophysical parameters, including precipitation from TRMM, and surface temperature and vegetation index from MODIS are used to derive the empirical relationship between malaria cases and these geophysical parameters. Both neural network methods and regression analyses are used to examine the environmental dependency of malaria transmission. And the trained models are used for predicting future transmission. While neural network methods are intrinsically more adaptive for nonlinear relationship, the regression approach lends itself in providing statistical significance measures. Our results indicate that NDVI is the strongest predictor. This reflects the role of irrigation, instead of precipitation, in Afghanistan for agricultural production. The second strongest prediction is surface temperature. Precipitation is not shown as a significant predictor, contrary to other malarious countries in the tropics or subtropics. With the regression approach, the malaria time series are modelled well, with average R2 of 0.845. For cumulative 6-month prediction of malaria cases, the average provincial accuracy reaches 91%. The developed predictive and early warning capabilities support the Third Strategic Approach of the WHO EMRO Malaria Control and Elimination Plan.

Safi, N.↗

DOE OSTI2020

Hierarchical, rotation‐equivariant neural networks to select structural models of protein complexes

Abstract Predicting the structure of multi‐protein complexes is a grand challenge in biochemistry, with major implications for basic science and drug discovery. Computational structure prediction methods generally leverage predefined structural features to distinguish accurate structural models from less accurate ones. This raises the question of whether it is possible to learn characteristics of accurate models directly from atomic coordinates of protein complexes, with no prior assumptions. Here we introduce a machine learning method that learns directly from the 3D positions of all atoms to identify accurate models of protein complexes, without using any precomputed physics‐inspired or statistical terms. Our neural network architecture combines multiple ingredients that together enable end‐to‐end learning from molecular structures containing tens of thousands of atoms: a point‐based representation of atoms, equivariance with respect to rotation and translation, local convolutions, and hierarchical subsampling operations. When used in combination with previously developed scoring functions, our network substantially improves the identification of accurate structural models among a large set of possible models. Our network can also be used to predict the accuracy of a given structural model in absolute terms. The architecture we present is readily applicable to other tasks involving learning on 3D structures of large atomic systems.

Eismann, Stephan↗

DOE OSTI2020

High-Energy X-ray Tomographic Analysis of Precursor Metal Powders (Ti-6Al-4V) Used for Additive Manufacturing

We utilized high-energy x-ray tomography to characterize Ti-6Al-4V metal powders (both as-received and recycled) used in powder-bed additive manufacturing process. The image processing workflow was developed to process and analyze large amount of data objectively by computer program. The distribution of size and shape of the metal particles as well as defect (mainly porosity) inside the particles was analyzed with the statistical representation and resolution in micrometer. The result revealed that circular-shaped porosity with various sizes could be embedded in the powder particles. These porosities could potentially be transferred to the 3D printed part and critically affect the mechanical performance of the component. The present study shows the effectiveness of characterizing metal powders using x-ray imaging techniques where sufficient number of particles can be sampled within tens of minutes with a minimum sample preparation and high accuracy. Clear structural differences in the as-received and recycled powders were delineated that helps in determining the feasibility of using the recycled powders.

36 MATERIALS SCIENCE↗

DOE OSTI2025

Cross-scale covariance for material property prediction

A simulation can stand its ground against an experiment only if its prediction uncertainty is known. The unknown accuracy of interatomic potentials (IPs) is a major source of prediction uncertainty, severely limiting the use of large-scale classical atomistic simulations in a wide range of scientific and engineering applications. Here we explore covariance between predictions of metal plasticity, from 178 large-scale (~10 8 atoms) molecular dynamics (MD) simulations, and a variety of indicator properties computed at small-scales (≤10 2 atoms). All simulations use the same 178 IPs. In a manner similar to statistical studies in public health, we analyze correlations of strength with indicators, identify the best predictor properties, and build a cross-scale “strength-on-predictors” regression model. This model is then used to estimate regression error over the statistical pool of IPs. Small-scale predictors found to be highly covariant with strength are computed using expensive quantum-accurate calculations and used to predict flow strength, within the statistical error bounds established in our study.

36 MATERIALS SCIENCE↗

DOE OSTI2022

Measuring the electron Yukawa coupling via resonant s-channel Higgs production at FCC-ee

The Future Circular Collider (FCC-ee) offers the unique opportunity of studying the Higgs Yukawa coupling to the electron, $y_\mathrm {e}$ , via resonant s -channel production, $\mathrm {e^+e^-}\rightarrow \mathrm {H}$ , in a dedicated run at $\sqrt{s} = m_\mathrm {H}$ . The signature for direct Higgs production is a small rise in the cross sections for particular final states, consistent with Higgs decays, over the expectations for their occurrence due to Standard Model (SM) background processes involving $\mathrm {Z}^*$ , $\gamma ^*$ , or t -channel exchanges alone. Performing such a measurement is remarkably challenging for four main reasons. First, the low value of the e $^\pm $ mass leads to a tiny $y_\mathrm {e}$ coupling and correspondingly small cross section: $\sigma _\mathrm {ee\rightarrow H} \propto m_\mathrm {e}^2 = 0.57$ fb accounting for initial-state $\gamma $ radiation. Second, the $\mathrm {e^+e^-}$ beams must be monochromatized such that the spread of their centre-of-mass (c.m.) energy is commensurate with the narrow width of the SM Higgs boson, $\varGamma _\mathrm {H} = 4.1$ MeV, while keeping large beam luminosities. Third, the Higgs mass must also be known beforehand with a few-MeV accuracy in order to operate the collider at the resonance peak, $\sqrt{s} = m_\mathrm {H}$ . Last but not least, the cross sections of the background processes are many orders-of-magnitude larger than those of the Higgs decay signals. A preliminary generator-level study of 11 Higgs decay channels using a multivariate analysis, which exploits boosted decision trees to discriminate signal and background events, identifies two final states as the most promising ones in terms of statistical significance: $\mathrm {H}\rightarrow gg$ and $\mathrm {H}\rightarrow \mathrm {W}\mathrm {W}^*\!\rightarrow \ell \nu $ + 2 jets. For a benchmark monochromatization with 4.1-MeV c.m. energy spread (leading to $\sigma _\mathrm {ee\rightarrow H} = 0.28$ fb) and 10 ab $^{-1}$ of integrated luminosity, a $1.3\sigma $ signal significance can be reached, corresponding to an upper limit on the e $^\pm $ Yukawa coupling at 1.6 times the SM value: |y e | < 1.6|y e SM | at 95% confidence level, per FCC-ee interaction point per year. Directions for future improvements of the study are outlined.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗