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At least 1,099 records · Page 61

Diffusion Paths for Interstitial Impurities in Different Polymorphic Modifications of Niobium Silicide Nb{sub 5}Si{sub 3}

Structural models of the α, β, and γ modifications of Nb{sub 5}Si{sub 3} silicides, which are used as a reinforcing phase in composites obtained in situ based on the Nb‒Si system, have been constructed by computer simulation methods. A geometric analysis of unit cells is performed using the H-poisk program to estimate the voids existing in the structures. The results of measuring the number of voids and their sizes are reported. A conclusion about possible diffusion paths of interstitial boron, carbon, nitrogen and oxygen atoms is drawn based on the calculation results, and the solubility of these impurities in the structure of each Nb{sub 5}Si{sub 3} modification is estimated.

36 MATERIALS SCIENCE↗

HRTEM, SAED and XRD investigations of RE{sub 4}O{sub 4}[AsO{sub 4}]Cl (RE = La, Pr, Nd, Sm, Eu, Gd)

Graphical abstract: The new compounds RE{sub 4}O{sub 4}[AsO{sub 4}]Cl (RE = La, Pr, Nd, Sm, Eu, Gd) were synthesised by solid state reaction via a salt flux route and investigated by HRTEM, SAED, and single crystal X-ray diffraction. - Highlights: • We discovered the series of RE{sub 4}O{sub 4}[AsO{sub 4}]Cl (RE = La, Pr, Nd, Sm, Eu, Gd) compounds. • The RE{sub 4}O{sub 4}[AsO{sub 4}]Cl single crystals were grown using NaCl/KCl flux. • The RE{sub 4}O{sub 4}[AsO{sub 4}]Cl structures were solved using single crystal X-ray diffraction data. • The layered RE{sub 4}O{sub 4}[AsO{sub 4}]Cl compounds were further characterized using HRTEM and SAED. • We observed an alternation of ordered-[RE{sub 4}O{sub 4}]{sup 4+} and disordered-[ClAsO{sub 4}]{sup 4–} layers. - Abstract: The new compounds RE{sub 4}O{sub 4}[AsO{sub 4}]Cl (RE = La, Pr, Nd, Sm, Eu, Gd) were synthesised by solid state reaction via a salt flux route and investigated by HRTEM, SAED, and single crystal X-ray diffraction. The samples crystallise with a tetragonal cell, space group P4{sub 2}/mnm and Z = 2. Their crystal structure consists of an alternation of [RE{sub 4}O{sub 4}]{sup 4+} and [ClAsO{sub 4}]{sup 4–} layers. The [RE{sub 4}O{sub 4}]{sup 4+} layer contains ORE{sub 4/4} tetrahedra which share common edges. The anions AsO{sub 4}{sup 3–} and Cl{sup –} are located between these layers in disordered manner. SAED and HRTEM experiments confirmed this structural model and enabled us to propose an ordered model for the [ClAsO{sub 4}]{sup 4–} layers.

36 MATERIALS SCIENCE↗

The role of chemical structure on the magnetic and electronic properties of Co{sub 2}FeAl{sub 0.5}Si{sub 0.5}/Si(111) interface

We show that Co{sub 2}FeAl{sub 0.5}Si{sub 0.5} film deposited on Si(111) has a single crystal structure and twin related epitaxial relationship with the substrate. Sub-nanometer electron energy loss spectroscopy shows that in a narrow interface region there is a mutual inter-diffusion dominated by Si and Co. Atomic resolution aberration-corrected scanning transmission electron microscopy reveals that the film has B2 ordering. The film lattice structure is unaltered even at the interface due to the substitutional nature of the intermixing. First-principles calculations performed using structural models based on the aberration corrected electron microscopy show that the increased Si incorporation in the film leads to a gradual decrease of the magnetic moment as well as significant spin-polarization reduction. These effects can have significant detrimental role on the spin injection from the Co{sub 2}FeAl{sub 0.5}Si{sub 0.5} film into the Si substrate, besides the structural integrity of this junction.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

High Fidelity Modeling of Evolutionary Structures in IMOS

A methodology is proposed for testing, modal identification, and model correlation of structures which are assembled in an evolutionary manner. The methodology prescribes initial testing of a base structure without any attached components. The experimental modal properties are used to update the physical properties of the base structure finite element model using a Bayesian Estimation Technique (BET). The BET is implemented in METLAB using IMOS functions. As components are added to the base structure, additional tests are performed. Three testing options are proposed, all of which enable estimation of the physical parameters of the components alone. Furthermore, improvements to the original BET implementation have been made, which contribute to higher fidelity models and more efficient computational times.

structures testing assembling modeling BET Bayesia↗

Neutrino-induced reactions and neutrino scattering with nuclei in low and high neutrino energy

We reviewed present status regarding theoretical approaches for neutrino-induced reactions and neutrino scattering. With a short introduction of relevant data, our recent calculations by distorted-wave Born approximation (DWBA) for quasielastic region are presented for MiniBooNE data. We also discussed that one step-process estimated by the DWBA is comparable to the two-step process, which has been usually used in the neutrino-nucleosynthesis. For much higher energy neutrino data, such as NOMAD data, elementary process approach was shown to be useful instead of using complicated nuclear models. But, in the low energy region, detailed nuclear structure model, such as QRPA and shell model, turn out to be inescapable to explain the reaction data.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A high temperature diffraction-resistance study of chalcopyrite, CuFeS{sub 2}

The electrical, magnetic and structural properties of synthetic chalcopyrite, CuFeS{sub 2}, have been studied up to 873 K using DC resistance measurements performed in-situ during neutron powder diffraction experiments. Under ambient conditions the material adopts the accepted structural model for CuFeS{sub 2} in the space group I4-bar 2d, with the magnetic moment of the Fe{sup 3+} cations aligned along [001]. The electrical resistivity is around 0.3 {Omega} cm under ambient conditions, consistent with semiconductor character, and decreases slightly with increase in temperature until a more abrupt fall occurs in the region 750-800 K. This abrupt change in resistivity is accompanied by a structural transition to a cubic zinc blende structured phase (space group F4-bar 3m) in which Cu{sup +} and Fe{sup 3+} cations are disordered over the same tetrahedral crystallographic sites and by a simultaneous loss of long-range magnetic order. The implications of these results are discussed in the context of previous studies of the chalcopyrite system. - Graphical abstract: Structural, magnetic and electrical properties of CuFeS{sub 2} to 873 K have been investigated using DC resistance measurements, performed in-situ during the collection of powder neutron diffraction data. Highlights: > Structural, magnetic and electronic properties are probed simultaneously. > A fall in resistivity at high temperatures is associated with cation disorder. > The order-disorder transition is accompanied by the loss of magnetic order. > The structural and magnetic phase transition is preceded by a 2-phase region. > Sulphur loss at high temperatures causes the phase transitions to be irreversible.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

4D Characterization of Metals by 3DXRD

The status of 3DXRD microscopy is reviewed, with a special view to applications in metallurgy. Various approaches are compared in terms of performance. In addition several recent advances are presented, such as a 3D grain map with an unprecedented spatial resolution of 500 nm, first results from the commissioning of a novel 3D detector set-up and a validation of the box-scan procedure. Three-Dimensional X-Ray Diffraction (3DXRD) is a novel technique, aiming at a fast and nondestructive characterization of the individual crystalline elements within mm-sized polycrystalline specimens. It is based on two principles: the use of highly penetrating hard X-rays from a synchrotron source (x-ray energies in the range 20-100 keV) and the application of 'tomographic' reconstruction algorithms for the analysis of the diffraction data. In favourable cases, the position, morphology, phase, and crystallographic orientation can be derived for hundreds of elements simultaneously as well as their elastic strains. Furthermore, the dynamics of the individual elements can be monitored during typical processes such as deformation or annealing. Hence, for the first time information on the interaction between elements can be obtained directly. The provision of such data is vital in order to extend beyond state-of-art structural models.

36 MATERIALS SCIENCE↗

Generating a debris model for a structure

A computer generates a computer model based on the output data of a finite element analysis (FEA) performed on a structure that has experienced a break up event. The output data is processed to generate a debris model. The debris model comprises data defining the structure, as well as any fragments or pieces of debris caused by forces exerted on the structure during the break up event. The debris model can then be utilized as input data to generate other computer models.

Laverty, Richard Rion↗

Structure and Electrochemistry of Two-Electron Redox Couples in Lithium Metal Fluorophosphates Based on the Tavorite Structure

An electrochemical and structural study of the two-electron redox couple comprising the tavorite-type series of fluorophosphates Li{sub 1{+-}x}VPO{sub 4}F (x = 0, 1) shows that both intercalation of LiVPO{sub 4}F with Li (to give Li{sub 2}VPO{sub 4}F) and deintercalation (to give VPO{sub 4}F) proceed by a two-phase mechanism. Structural models for each of the three phases were determined by Rietveld refinements of combined neutron and X-ray diffraction data of the isolated pure phase materials. LiVPO{sub 4}F crystallizes in the triclinic space group P1{sup -} and is isostructural to many known fluorophosphates whereas both Li{sub 2}VPO{sub 4}F and VPO{sub 4}F crystallize in the monoclinic space group C2/c, although they have very closely related structures to the parent. Solid-state {sup 6,7}Li NMR studies of Li{sub 2}VPO{sub 4}F reveal the two lithium sites are clearly distinguishable, with more than 100 ppm separation between the resonances. 2D exchange NMR is used to demonstrate the time scale of ion dynamics between the two sites.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Thick-to-Thin Filament Surface Distance Modulates Cross-Bridge Kinetics in Drosophila Flight Muscle

The demembranated (skinned) muscle fiber preparation is widely used to investigate muscle contraction because the intracellular ionic conditions can be precisely controlled. However, plasma membrane removal results in a loss of osmotic regulation, causing abnormal hydration of the myofilament lattice and its proteins. We investigated the structural and functional consequences of varied myofilament lattice spacing and protein hydration on cross-bridge rates of force development and detachment in Drosophila melanogaster indirect flight muscle, using x-ray diffraction to compare the lattice spacing of dissected, osmotically compressed skinned fibers to native muscle fibers in living flies. Osmolytes of different sizes and exclusion properties (Dextran T-500 and T-10) were used to differentially alter lattice spacing and protein hydration. At in vivo lattice spacing, cross-bridge attachment time (t{sub on}) increased with higher osmotic pressures, consistent with a reduced cross-bridge detachment rate as myofilament protein hydration decreased. In contrast, in the swollen lattice, t{sub on} decreased with higher osmotic pressures. These divergent responses were reconciled using a structural model that predicts t{sub on} varies inversely with thick-to-thin filament surface distance, suggesting that cross-bridge rates of force development and detachment are modulated more by myofilament lattice geometry than protein hydration. Generalizing these findings, our results suggest that cross-bridge cycling rates slow as thick-to-thin filament surface distance decreases with sarcomere lengthening, and likewise, cross-bridge cycling rates increase during sarcomere shortening. Together, these structural changes may provide a mechanism for altering cross-bridge performance throughout a contraction-relaxation cycle.

59 BASIC BIOLOGICAL SCIENCES↗

The hydrogenation of Dy{sub 5}Pd{sub 2} followed by in situ methods

The hydrogenation behavior of the intermetallic compound Dy{sub 5}Pd{sub 2} was investigated by means of ex situ X-ray powder diffraction, in situ neutron powder diffraction and in situ differential scanning calorimetry. The structural model of Dy{sub 5}Pd{sub 2} with a palladium atom at the 32(e) position x, x, x (x Almost-Equal-To 0.22, 7/8 occupation) and a dysprosium atom at almost the same location (x Almost-Equal-To 0.18, 1/8 occupation) is confirmed. Upon heating the latter approaches x(Pd) and at T=399 K both positional parameters are indistinguishable. Dy{sub 5}Pd{sub 2} does not incorporate hydrogen (deuterium) into its crystal structure, however, starting at T=495 K reacts with hydrogen to non stoichiometric dysprosium dideuteride, DyD{sub 2+x}, following a parabolic rate law. In situ differential scanning calorimetry at various hydrogen pressures up to 2.5 MPa shows strongly exothermic signals, whose temperature onset depend on the gas pressure, corresponding to the formation of a mainly ionic hydride (DyH{sub 2+x}). - Graphical abstract: The hydrogenation of Dy5Pd2 is being followed by in situ neutron diffraction. Highlights: Black-Right-Pointing-Pointer Dy5Pd2 does not form a ternary hydride upon hydrogenation. Black-Right-Pointing-Pointer Dy5Pd2 decomposes to binary hydrides of dysprosium and palladium. Black-Right-Pointing-Pointer At T{>=}399 K Dy3 and Pd in the crystal structure of Dy5Pd2 share the same position. Black-Right-Pointing-Pointer The formation of DyD2+x at T=495 K and p(D2)=2.5 MPa follows a parabolic rate law.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Development of a Computational Framework for the Design of Resilient Space Structures

Cyber-physical testing provides a unique platform to enable the design of resilient space structures. This hybrid approach requires the development of a structural model that accounts for various hazards (e.g., micrometeorite and debris impact) and interacts with physical tests and other sub-system models (e.g., thermal) of the space habitat. A two-dimensional finite element analysis code was developed in MATLAB to facilitate the evaluation of potential designs under operating and unexpected loads and prepare the computational framework for eventually performing cyber-physical testing. The code’s efficiency was enhanced by using an object-oriented programming approach that reduced data transfer between functions. In this study, the code is implemented to predict the response of a dome-style structure made of regolith concrete to impact loading and identify the force magnitude that will cause the tensile strength to be exceeded in domes with different thicknesses.

Tensile strength↗

Microstructure and magnetic properties of ultrathin FePt granular films

FePt granular films with grain size smaller than 10 nm are promising candidates for storage media used in the next generation heat-assisted magnetic recording technology. However, FePt films show degraded magnetic properties when the grain size is reduced to this scale, which cannot be explained solely by the finite size theory. In this study, we explored the structural cause of property degradation by employing advanced electron microscopy and atomistic modeling. Structural features unique to the nanostructured FePt granular films at significantly reduced grain sizes of 2~8 nm were studied by high-resolution scanning transmission electron microscopy with geometric aberrations corrected up to the third order. Two critical structural parameters, the threshold grain size corresponding to the upper size limit of the FePt grains with zero chemical ordering and the sub-nanometer thin interfacial impurity at grain boundaries, were identified. A new atomistic model was developed to correlate these structural characteristics with key magnetic properties such as Curie temperature, saturation magnetization, magnetocrystalline anisotropy, and their grain-to-grain variation. The model shows good agreement with the experimental magnetic data and explains the gap in magnetic properties between the bulk and nanostructured FePt.

36 MATERIALS SCIENCE↗

Ultra-flexible framework breathing in response to dehydration in liskeardite, [(Al,Fe){sub 16}(AsO{sub 4}){sub 9}(OH){sub 21}(H{sub 2}O){sub 11}]·26H{sub 2}O, a natural open-framework compound

Dehydration of the natural open-framework compound, liskeardite, [(Al,Fe){sub 16}(AsO{sub 4}){sub 9}(OH){sub 21}(H{sub 2}O){sub 11}]·26H{sub 2}O, is accompanied by a change in the sign of the thermal expansion from positive to negative above room temperature, and at ~100 °C the structure undergoes a dramatic 2D contraction by co-operative rotation of heteropolyhedral columns that constitute the framework walls. Monoclinic liskeardite, I112 with a≈b≈24.7 Å, c ≈7.8 Å and β≈90° is transformed to a tetragonal phase, I-4 with a≈20.6 Å, c ≈7.7 Å. The associated 30% decrease in volume is unprecedented in inorganic microporous compounds. The flexibility of the contraction is related to the double-hinged nature of the column rotations about [001]. Octahedra in adjacent columns are interconnected by corner-sharing with the two pairs of anions forming opposing edges of AsO{sub 4} tetrahedra, so a double-hinged rotation mechanism operates. Thermal analysis and mass spectroscopic results for liskeardite show that the phase transition at ~100 °C is related to removal of the channel water. The tetragonal phase shows exceptionally large NTE behaviour. Over the temperature range 148–178 the NTE along a and b is close to linear with a magnitude of the order of −900×10{sup −6} °C{sup −1}. The contraction along the channel direction is smaller but still appreciable at −200×10{sup −6} °C{sup −1}. - Graphical abstract: Structure of the collapsed liskeardite framework, formed on dehydration above 100 °C. - Highlights: • The thermal expansion of the mineral liskeardite changes + to − above ambient. • Dehydration at 100 °C results in a record reversible 30% volume reduction. • In situ synchrotron XRD has led to a structural model for the dehydrated phase. • Framework breathing flexibility is attributed to a double-hinge rotation mechanism. • The dehydrated phase shows unprecedented -ve expansion for inorganic materials.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Well-Defined Nanoparticle Electrocatalysts for the Refinement of Theory

The relationship between experiment and theory in electrocatalysis is one of profound importance. Until fairly recently, the principal role of theory in this field was interpreting experimental results. Over the course of the past decade (roughly the period covered by this review), however, that has begun to change, with theory now frequently leading the design of electrocatalytic materials. Though rewarding, this has not been a particularly easy union. For one thing, experimentalists and theorists have to come to grips with the fact that they rely on different models. Theorists make predictions based on individual, perfect structural models, while experimentalists work with more complex and heterogeneous ensembles of electrocatalysts. As discussed in this review, computational capabilities have improved in recent years, so that theory is better represented by the structures that experimentalists are able to prepare. Likewise, synthetic chemists are able to make ever more complex electrocatalysts with high levels of control, which provide a more extensive palette of materials for testing theory. Finally, the goal of this review is to highlight research from the last ~10 years that focuses on carefully controlled electrocatalytic experiments which, in combination with theoretical predictions, bring us closer to bridging the gap between real catalysts and computational models.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A Novel N-Acetylglutamate Synthase Architecture Revealed by the Crystal Structure of the Bifunctional Enzyme from Maricaulis maris

Novel bifunctional N-acetylglutamate synthase/kinases (NAGS/K) that catalyze the first two steps of arginine biosynthesis and are homologous to vertebrate N-acetylglutamate synthase (NAGS), an essential cofactor-producing enzyme in the urea cycle, were identified in Maricaulis maris and several other bacteria. Arginine is an allosteric inhibitor of NAGS but not NAGK activity. The crystal structure of M. maris NAGS/K (mmNAGS/K) at 2.7 {angstrom} resolution indicates that it is a tetramer, in contrast to the hexameric structure of Neisseria gonorrhoeae NAGS. The quaternary structure of crystalline NAGS/K from Xanthomonas campestris (xcNAGS/K) is similar, and cross-linking experiments indicate that both mmNAGS/K and xcNAGS are tetramers in solution. Each subunit has an amino acid kinase (AAK) domain, which is likely responsible for N-acetylglutamate kinase (NAGK) activity and has a putative arginine binding site, and an N-acetyltransferase (NAT) domain that contains the putative NAGS active site. These structures and sequence comparisons suggest that the linker residue 291 may determine whether arginine acts as an allosteric inhibitor or activator in homologous enzymes in microorganisms and vertebrates. In addition, the angle of rotation between AAK and NAT domains varies among crystal forms and subunits within the tetramer. A rotation of 26{sup o} is sufficient to close the predicted AcCoA binding site, thus reducing enzymatic activity. Since mmNAGS/K has the highest degree of sequence homology to vertebrate NAGS of NAGS and NAGK enzymes whose structures have been determined, the mmNAGS/K structure was used to develop a structural model of human NAGS that is fully consistent with the functional effects of the 14 missense mutations that were identified in NAGS-deficient patients.

59 BASIC BIOLOGICAL SCIENCES↗

Unexpected structural softening of interstitial boron solid solution WB{sub 3+x}

Using first-principles calculations, we reveal an unexpected structural softening in a recently proposed WB{sub 3+x} structural model that tries to explain the X-ray diffraction, high resolution TEM, pressure dependence of the normalized lattice c/a ratio, and hardness experimental results of the synthesized tungsten boride compounds with a nominal composition WB{sub 4}. We show that the interstitial boron in WB{sub 3+x}, which was proposed to strengthen the covalent bonding network, unexpectedly weakens the atomic bonding, resulting in a large reduction of its indentation strength to well below that of WB{sub 3}. This is in direct contradiction to the experimental results showing that synthesized WB{sub 4} is harder than WB{sub 3}. The unusual structural softening is attributed to the unique three-center covalent bonding formed by the interstitial boron atoms that can easily deform under indentation. Our results show that the proposed interstitial boron solid solution WB{sub 3+x} structure is incompatible with experimental results, which calls for further investigations to determine the crystal structure of the synthesized WB{sub 4}.

36 MATERIALS SCIENCE↗

Biophysical studies and modelling indicate the binding preference of TAZ WW domain for LATS1 PPxY motif

Highlights: • TAZ WW domain preferentially binds to the second PPxY motif of LATS1. • Modelled structure of TAZ WW-PPxY2 is stable and adopts the typical WW fold. • Binding site residues, L143 and T150 reduce the binding affinity of TAZ WW domain. The Hippo tumor suppressor pathway is an important regulator of cell proliferation and apoptosis, and signal transduction occurs through phosphorylation of the effector protein TAZ by the serine/threonine kinase LATS1/2. Here, we report the biophysical and computational studies to characterize the interaction between TAZ and LATS1/2 through WW domain-PPxY motif binding. We show that the TAZ WW domain exhibits a binding preference for the second of the two PPxY motifs of LATS1 in vitro. We modelled the structure of the domain in complex with LATS1 PPxY2 peptide and, through molecular dynamics simulations, show that WW domain-PPxY2 complex is stable with some flexibility in the peptide region. Next, we predict and verify that L143 and T150 of the WW domain are important for TAZ binding with the PPxY2 peptide using mutational and isothermal titration calorimetric studies. Furthermore, we suggest that the electrostatic potential of charged residues within the binding pocket may influence the ligand affinity among otherwise highly similar WW domains.

60 APPLIED LIFE SCIENCES↗