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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,099 records · Page 61
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites

Trichoderma spp. are ubiquitous rhizosphere fungi capable of producing several classes of secondary metabolites that can modify the dynamics of the plant-associated microbiome. However, the bacterial-fungal mechanisms that mediate these interactions have not been fully characterized. Here, a random barcode transposon-site sequencing (RB-TnSeq) approach was employed to identify bacterial genes important for fitness in the presence of Trichoderma atroviride exudates. We selected three rhizosphere bacteria with RB-TnSeq mutant libraries that can promote plant growth: the nitrogen fixers Klebsiella michiganensis M5aI and Herbaspirillum seropedicae SmR1, and Pseudomonas simiae WCS417. As a non-rhizosphere species, Pseudomonas putida KT2440 was also included. From the RB-TnSeq data, nitrogen-fixing bacteria competed mainly for iron and required the siderophore transport system TonB/ExbB for optimal fitness in the presence of T . atroviride exudates. In contrast, P . simiae and P . putida were highly dependent on mechanisms associated with membrane lipid modification that are required for resistance to cationic antimicrobial peptides (CAMPs). A mutant in the Hog1-MAP kinase (Δ tmk 3) gene of T . atroviride showed altered expression patterns of many nonribosomal peptide synthetase (NRPS) biosynthetic gene clusters with potential antibiotic activity. In contrast to exudates from wild-type T . atroviride , bacterial mutants containing lesions in genes associated with resistance to antibiotics did not show fitness defects when RB-TnSeq libraries were exposed to exudates from the Δ tmk3 mutant. Unexpectedly, exudates from wild-type T . atroviride and the Δ tmk 3 mutant rescued purine auxotrophic mutants of H . seropedicae , K . michiganensis and P . simiae . Metabolomic analysis on exudates from wild-type T . atroviride and the Δ tmk 3 mutant showed that both strains excrete purines and complex metabolites; functional Tmk3 is required to produce some of these metabolites. This study highlights the complex interplay between Trichoderma -metabolites and soil bacteria, revealing both beneficial and antagonistic effects, and underscoring the intricate and multifaceted nature of this relationship.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Neutralization profiles of HIV-1 viruses from the VRC01 Antibody Mediated Prevention (AMP) trials

The VRC01 Antibody Mediated Prevention (AMP) efficacy trials conducted between 2016 and 2020 showed for the first time that passively administered broadly neutralizing antibodies (bnAbs) could prevent HIV-1 acquisition against bnAb-sensitive viruses. HIV-1 viruses isolated from AMP participants who acquired infection during the study in the sub-Saharan African (HVTN 703/HPTN 081) and the Americas/European (HVTN 704/HPTN 085) trials represent a panel of currently circulating strains of HIV-1 and offer a unique opportunity to investigate the sensitivity of the virus to broadly neutralizing antibodies (bnAbs) being considered for clinical development. Pseudoviruses were constructed using envelope sequences from 218 individuals. The majority of viruses identified were clade B and C; with clades A, D, F and G and recombinants AC and BF detected at lower frequencies. We tested eight bnAbs in clinical development (VRC01, VRC07-523LS, 3BNC117, CAP256.25, PGDM1400, PGT121, 10–1074 and 10E8v4) for neutralization against all AMP placebo viruses (n = 76). Compared to older clade C viruses (1998–2010), the HVTN703/HPTN081 clade C viruses showed increased resistance to VRC07-523LS and CAP256.25. At a concentration of 1μg/ml (IC80), predictive modeling identified the triple combination of V3/V2-glycan/CD4bs-targeting bnAbs (10-1074/PGDM1400/VRC07-523LS) as the best against clade C viruses and a combination of MPER/V3/CD4bs-targeting bnAbs (10E8v4/10-1074/VRC07-523LS) as the best against clade B viruses, due to low coverage of V2-glycan directed bnAbs against clade B viruses. Overall, the AMP placebo viruses represent a valuable resource for defining the sensitivity of contemporaneous circulating viral strains to bnAbs and highlight the need to update reference panels regularly. Our data also suggests that combining bnAbs in passive immunization trials would improve coverage of global viruses.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2026

Dated soil C–N–P profiles, water quality, and chamber fluxes across Ohio and Michigan wetlands (2024–2025)

This dataset includes dated soil core chemistry (bulk density, phosphorus, nitrogen and carbon concentrations), water quality, and chamber flux measurements collected from wetlands in the Midwest United States—12 sites in Ohio, one site in Indiana, one site in Michigan—collected in the spring or summer of 2024 or 2025, all in (.csv) format. These data were generated to examine how wetland restoration, management activities, and time since restoration affect biogeochemical processes, carbon sequestration, nutrient accumulation, water quality, and greenhouse gas emissions. Specifically, these data aim to investigate how restored wetlands differ from natural wetlands in terms of carbon, nitrogen, phosphorus dynamics, as well as carbon dioxide and methane fluxes. Also included are surface and porewater quality parameters and chamber flux measurements across these different wetlands. Sampling was conducted at various sites representing a range of restoration stages, from about 4 years post-restoration up to 105 years post-restoration, and also includes a natural wetland used as a reference in Michigan. These data can be used to determine carbon sequestration rates, nutrient cycling, and to enhance our understanding of biogeochemical responses to wetland restoration in temperate ecosystems. This data package contains (1) a csv file (Water_Quality.csv) containing water quality data (dissolved organic carbon, total dissolved nitrogen, and temperature) organized by location; (2) a csv file (Soil_C_N_P_Seq.csv) containing carbon, nitrogen, and phosphorus concentrations at each soil level and time of each soil level, as well as their sequestration rates; (3) a csv file (CH4_CO2_Flux.csv) including methane and carbon dioxide fluxes that were measured with a chamber; (4) a file-level metadata (FLMD.csv) file that lists each file contained in the dataset with associated metadata; (5) a data dictionary (DD.csv) file that contains terms/column headers used throughout the files along with a definition, units, and data type; and (6) a locations metadata file (Location_metadata.csv).

Earth Science > Atmosphere > Atmospheric Chemistry↗
DOE OSTI2021

Proposed Longitudinal Profile Diagnostics for Optical Stochastic Cooling of Stored Electrons in the IOTA Ring

One of the predicted signatures of successful optical stochastic cooling (OSC) in the Fermilab Integrable Optics Test Accelerator (IOTA) ring is reduction of the bunch length. The IOTA OSC experiment is designed for a low nominal beam current (~0.1 microAmps of 100-MeV electrons) to reduce intrabeam scattering (IBS), and during cooling, OSC is expected to reduce the bunch length from ~200 ps to ~130 ps*. These equilibrium bunch lengths can be measured using a streak camera and the optical synchrotron radiation (OSR) generated in a ring dipole by the circulating beam. A similar measurement was previously performed at the Advanced Photon Source with a Hamamatsu C5680 synchroscan streak camera operating at 117.3 MHz**. In this case, synchronous summing of OSR resulted in a bunch length measurement of 276 ± 30 ps using only 57 electrons circulating at 425 MeV. At IOTA, an existing streak camera has been modified to operate at the 11th harmonic of the ring’s revolution frequency of 7.50 MHz and has been installed on an OSR port in support of the OSC experiments. The integrated system will have sufficient sensitivity and resolution for measuring the evolution and equilibrium values of the bunch length during OSC experiments.

Lumpkin, Alex H.↗
DOE OSTI2020

A beam profile and position measurement system for the IPF target

Currently one determines the size and position of the proton beam at the IPF target using plastic films. These films are installed in a target carrier, lowered into position, exposed to the beam, raised back up to the hot cell, removed from the target carrier, and assessed via a video feed. About an hour is required for each cycle of measurement. Because of this high cost in terms of time the users usually settle for a beam that is good enough to meet their needs, but not as good as they would like. I propose here a diagnostic device that would enable a measurement of under two seconds. This would enable delivery of a better-quality beam in less time.

43 PARTICLE ACCELERATORS↗
DOE OSTI2020

Statistical Profiles of E1 EMP Coupling to Single Conductors

An electro-magnetic pulse (EMP) event can induce large currents and voltages on electrical conductors such as electrical power transmission lines which span many kilometers and the shorter lines typically tens of meters in length used to monitor equipment controlling the power grid. The exact current and voltage induced on a conductor depends on many factors, such as line height, diameter and length as well as ground conductivity and the location of the EMP event relative to the conductor. The current work focus on the line location and orientation relative to the EMP source. A statistical, Monte-Carlo approach is used in sampling the line configuration and then calculating the induced current and voltage. Thousands of EMP events are simulated on the region of the Earth where the EMP event can couple to a given above-ground conductor and the resulting current and voltage is then calculated on that conductor. Through the many simulations, one can assemble statistics on the insult including the peak value, rise time and pulse width.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2020

Time-Lapse Vertical Seismic Profiling (VSP) for CO 2 Storage in a Depleted Oil Field in Northern Michigan

The goal of the Dover 33 VSP study was to test the effectiveness of time-lapse VSP for detecting and delineating a plume of more than 271,000 tonnes of CO 2 injected into the Brown Niagaran and A-1 Carbonate formations within the Dover 33 reef between March 2013 and September 2016. Five 2D walkaway VSP (WVSP) source lines were acquired by SIGMA3 in September 2016 to investigate the possible time-lapse response in both P-wave and PS-wave seismic data. The data was compared to the same survey geometry acquired in March 2013 by SR2020.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

SST-GPU: A Scalable SST GPU Component for Performance Modeling and Profiling

Programmable accelerators have become commonplace in modern computing systems. Advances in programming models and the availability of unprecedented amounts of data have created a space for massively parallel accelerators capable of maintaining context for thousands of concurrent threads resident on-chip. These threads are grouped and interleaved on a cycle-by-cycle basis among several massively parallel computing cores. One path for the design of future supercomputers relies on an ability to model the performance of these massively parallel cores at scale. The SST framework has been proven to scale up to run simulations containing tens of thousands of nodes. A previous report described the initial integration of the open-source, execution-driven GPU simulator, GPGPU-Sim, into the SST framework. This report discusses the results of the integration and how to use the new GPU component in SST. It also provides examples of what it can be used to analyze and a correlation study showing how closely the execution matches that of a Nvidia V100 GPU when running kernels and mini-apps.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

Efficient connection of reactive shock wave profiles to reaction models

The future of energetic materials development, especially high-performance high explosives, demands new efficient and cost-effective experimental methods to understand the performance of new materials when only limited, development-scale quantities are available. Indeed, perhaps thousands of new molecules that have promising thermodynamic properties have been synthesized, only to be documented in the literature and never evaluated for their potential due to the cost of scaling up to produce quantities needed for traditional performance measurements.

36 MATERIALS SCIENCE↗