Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “Assembly”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,099 records · Page 61
All sourcesNASA NTRSDOE OSTI
DOE OSTI2018

De Novo Design of Self-Assembling Helical Protein Filaments

We describe a general computational approach to designing self-assembling helical filaments from monomeric proteins and use this approach to design proteins that assemble into micrometer-scale filaments with a wide range of geometries in vivo and in vitro. Cryo–electron microscopy structures of six designs are close to the computational design models. The filament building blocks are idealized repeat proteins, and thus the diameter of the filaments can be systematically tuned by varying the number of repeat units. The assembly and disassembly of the filaments can be controlled by engineered anchor and capping units built from monomers lacking one of the interaction surfaces. The ability to generate dynamic, highly ordered structures that span micrometers from protein monomers opens up possibilities for the fabrication of new multiscale metamaterials.

Shen, Hao↗
DOE OSTI2018

Assembly of Methyl Coenzyme M Reductase in the Methanogenic Archaeon Methanococcus maripaludis

Methyl coenzyme M reductase (MCR) is a complex enzyme that catalyzes the final step in biological methanogenesis. To better understand its assembly, the recombinant MCR from the thermophile Methanothermococcus okinawensis (rMCRok) was expressed in the mesophile Methanococcus maripaludis. The rMCRok was posttranslationally modified correctly and contained McrD and the unique nickel tetrapyrrole coenzyme F 430 . Subunits of the native M. maripaludis (MCRmar) were largely absent, suggesting that the recombinant enzyme was formed by an assembly of cotranscribed subunits. Strong support for this hypothesis was obtained by expressing a chimeric operon comprising the His-tagged mcrA from M. maripaludis and the mcrBDCG from M. okinawensis in M. maripaludis. The His-tagged purified rMCR then contained the M. maripaludis McrA and the M. okinawensis McrBDG. The present study prompted us to form a working model for MCR assembly, which can be further tested by the heterologous expression system established here.

03 NATURAL GAS↗
DOE OSTI2018

Symmetry and Topology Code of the Cluster Self-Assembly of Intermetallic Compounds A{sub 2}{sup [16]}B{sub 4}{sup [12]} of the Friauf Families Mg{sub 2}Cu{sub 4} and Mg{sub 2}Zn{sub 4}

A geometrical and topological analysis of intermetallic compounds A{sub 2}{sup [16]}B{sub 4}{sup [12]} of the Friauf families Mg{sub 2}Cu{sub 4} (formed in 273 binary and 775 ternary systems) and Mg{sub 2}Zn{sub 4} (formed in 67 binary and 121 ternary systems) has been performed. Basic 3D nets are determined in the form of a graph, whose sites correspond to the centers of tetrahedral cluster precursors В{sub 4}: Cu-type net with a coordination number (CN) of 12 for Mg{sub 2}Cu{sub 4} and a BN-type net with a CN of 8 for Mg{sub 2}Zn{sub 4}. The symmetry and topology code is determined for the crystal structure self-assembly in the following form: primary chain S{sub 3}{sup 1} → microlayer S{sub 3}{sup 2} → microframework S{sub 3}{sup 3}. An identical mechanism of primary chain S{sub 3}{sup 1} self-assembly from B{sub 4} clusters with participation of large template atoms A{sup [16]} for both families and a mechanism of S{sub 3}{sup 2} microlayer self-assembly from parallel S{sub 3}{sup 1} chains in Mg{sub 2}Cu{sub 4} (basic 2D net 4{sup 4}) and shifted chains in Mg{sub 2}Zn{sub 4} (basic 2D net 3{sup 6}) have been determined for the first time. The constant chemical composition of intermetallic compounds A{sub 2}{sup [16]}B{sub 4}{sup [12]} is related to the functional difference between the B atoms forming 3D frameworks and template atoms А. The numbers of chemically different В{sub 4} clusters for the Mg{sub 2}Cu{sub 4} and Mg{sub 2}Zn{sub 4} families are found to be 25 and 19, respectively.

36 MATERIALS SCIENCE↗
DOE OSTI2018

Study of the Effective Refractive Index Profile in Self-Assembling Nanostructured ITO Films

The optical characteristics and structural features of self-assembling nanostructured indium–tin oxide (ITO) films deposited onto substrates heated above 400°C are studied. Estimations of the distribution profiles of the material and effective refractive index in the films under study are obtained by computer simulation of a medium having spectral dependences of light transmission and reflection coefficients closest to those observed in the experiment. These results are in good agreement with scanning electron microscopy data for these films and make it possible to not only confirm the gradient character of such coatings but also restore some of its features. The further overgrowth of voids in self-assembling nanostructured films by means of the deposition of an additional material amount by magnetron sputtering at room temperature leads to a variation in the effective refractive index profile in them. Thus, it is possible to form transparent conductive films with an efficient refractive index profile adjusted for specific tasks. Adjustment of the refractive index profile in self-assembled ITO films acquires a special value for designing coatings with specified properties by virtue of a limited set of transparent conductive materials.

36 MATERIALS SCIENCE↗
DOE OSTI2020

DUCTED ASSEMBLY STEADY STATE HEAT TRANSFER SOFTWARE

The Ducted Assembly Steady State Heat transfer software (DASSH) performs full core, steady state, subchannel temperature calculations for hexagonal, ducted assemblies. DASSH is targeted for use in the early stages of the reactor design process when assembly characteristics may not be defined or are undergoing considerable changes. DASSH provides a relatively rapid assessment of the temperature and flow distribution to inform reactor design updates and analysis.

ATZ, MILOSIVO↗
DOE OSTI2024

Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

Abstract Background Over their evolutionary history, corals have adapted to sea level rise and increasing ocean temperatures, however, it is unclear how quickly they may respond to rapid change. Genome structure and genetic diversity contained within may highlight their adaptive potential. Results We present chromosome-scale genome assemblies and linkage maps of the critically endangered Atlantic acroporids,Acropora palmataandA. cervicornis. Both assemblies and linkage maps were resolved into 14 chromosomes with their gene content and colinearity. Repeats and chromosome arrangements were largely preserved between the species. The family Acroporidae and the genusAcroporaexhibited many phylogenetically significant gene family expansions. Macrosynteny decreased with phylogenetic distance. Nevertheless, scleractinians shared six of the 21 cnidarian ancestral linkage groups as well as numerous fission and fusion events compared to other distantly related cnidarians. Genetic linkage maps were constructed from oneA. palmatafamily and 16A. cervicornisfamilies using a genotyping array. The consensus maps span 1,013.42 cM and 927.36 cM forA. palmataandA. cervicornis, respectively. Both species exhibited high genome-wide recombination rates (3.04 to 3.53 cM/Mb) and pronounced sex-based differences, known as heterochiasmy, with 2 to 2.5X higher recombination rates estimated in the female maps. Conclusions Together, the chromosome-scale assemblies and genetic maps we present here are the first detailed look at the genomic landscapes of the critically endangered Atlantic acroporids. These data sets revealed that adaptive capacity of Atlantic acroporids is not limited by their recombination rates. The sister species maintain macrosynteny with few genes with high sequence divergence that may act as reproductive barriers between them. In the AtlanticAcropora, hybridization between the two sister species yields an F1 hybrid with limited fertility despite the high levels of macrosynteny and gene colinearity of their genomes. Together, these resources now enable genome-wide association studies and discovery of quantitative trait loci, two tools that can aid in the conservation of these species.

Biotechnology & Applied Microbiology↗
DOE OSTI2023

Comparative Thermal Performance of Downdraft and Updraft Forced Convection in a Representative 3x3 PWR Fuel Assembly

A plethora of theoretical, numerical, and experimental investigations have relied on updraft forced convection of operating fuel assemblies for light water-cooled fuel assemblies. The inertial scales of turbulence in updraft flow through PWR fuel assemblies are primarily influenced by upstream mixing patterns within the lower plenum and consequent acceleration of flow through the lower core and support plates into the bottom nozzles. In secondary heat transfer applications such as steam generation, recuperation and economization, downdraft flow is utilized to retrieve maximal sensible heat from the primary coolant. Sub-channel volumes aligned vertically could also benefit from force of gravity in developing turbulent flows. A large reduction in pumping power, associated cost of operation and maintenance, and improved balance of plant is suggested to be possible through downdraft forced convection in PWR-type reactors. This article explores the impact of downdraft forced convection within the well-studied 3x3 sub-channel within a range of 20 hydraulic diameters across a representative intermediate flow mixing grid. A range of inflow Reynolds number from 10,000 to 60,000 is simulated over a range of equivalent heat loads of 20% to 100% spanning 20 hydraulic diameters. The fuel rods are represented in true geometric detail, and a constant-value heat profile is assumed for the investigation. At each inflow condition, the turbulence intensity, peak velocity, local heat transfer coefficient, peak wall heat flux, and peak wall temperature are collected across the sub-channel and compared with an updraft configuration evaluated at the same conditions.

Rao, Vivek↗
DOE OSTI2019

ACAP1 assembles into an unusual protein lattice for membrane deformation through multiple stages

Studies on the Bin-Amphiphysin-Rvs (BAR) domain have advanced a fundamental understanding of how proteins deform membrane. We previously showed that a BAR domain in tandem with a Pleckstrin Homology (PH domain) underlies the assembly of ACAP1 (Arfgap with Coil-coil, Ankryin repeat, and PH domain I) into an unusual lattice structure that also uncovers a new paradigm for how a BAR protein deforms membrane. Here, we initially pursued computation-based refinement of the ACAP1 lattice to identify its critical protein contacts. Simulation studies then revealed how ACAP1, which dimerizes into a symmetrical structure in solution, is recruited asymmetrically to the membrane through dynamic behavior. We also pursued electron microscopy (EM)-based structural studies, which shed further insight into the dynamic nature of the ACAP1 lattice assembly. As ACAP1 is an unconventional BAR protein, our findings broaden the understanding of the mechanistic spectrum by which proteins assemble into higher-ordered structures to achieve membrane deformation.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Inferring assembly-curving trends of bacterial micro-compartment shell hexamers from crystal structure arrangements

Bacterial microcompartments (BMC) are complex macromolecular assemblies that participate in varied chemical processes in about one fourth of bacterial species. BMC-encapsulated enzymatic activities are segregated from other cell contents by means of semipermeable shells, justifying why BMC are viewed as prototype nano-reactors for biotechnological applications. Herein, we undertook a comparative study of bending propensities of BMC hexamers (BMC-H), the most abundant shell constituents. Published data show that some BMC-H, like β -carboxysomal CcmK, tend to assemble flat whereas other BMC-H often build curved objects. Inspection of available crystal structures presenting BMC-H in tiled arrangements permitted us to identify two major assembly modes with a striking connection with experimental trends. All-atom molecular dynamics (MD) supported that BMC-H bending is triggered robustly only from the arrangement adopted in crystals by BMC-H that experimentally form curved objects, leading to very similar arrangements to those found in structures of recomposed BMC shells. Simulations on triplets of planar-behaving hexamers, which were previously reconfigured to comply with such organization, confirmed that bending propensity is mostly defined by the precise lateral positioning of hexamers, rather than by BMC-H identity. Finally, an interfacial lysine was pinpointed as the most decisive residue in controlling PduA spontaneous curvature. Globally, results presented herein should contribute to improve our understanding of the variable mechanisms of biogenesis characterized for BMC, and of possible strategies to regulate BMC size and shape.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2017

Symmetry based assembly of a 2 dimensional protein lattice

The design of proteins that self-assemble into higher order architectures is of great interest due to their potential application in nanotechnology. Specifically, the self-assembly of proteins into ordered lattices is of special interest to the field of structural biology. Here we designed a 2 dimensional (2D) protein lattice using a fusion of a tandem repeat of three TelSAM domains (TTT) to the Ferric uptake regulator (FUR) domain. We determined the structure of the designed (TTT-FUR) fusion protein to 2.3 Å by X-ray crystallographic methods. In agreement with the design, a 2D lattice composed of TelSAM fibers interdigitated by the FUR domain was observed. As expected, the fusion of a tandem repeat of three TelSAM domains formed 21 screw axis, and the self-assembly of the ordered oligomer was under pH control. We demonstrated that the fusion of TTT to a domain having a 2-fold symmetry, such as the FUR domain, can produce an ordered 2D lattice. The TTT-FUR system combines features from the rotational symmetry matching approach with the oligomer driven crystallization method. This TTT-FUR fusion was amenable to X-ray crystallographic methods, and is a promising crystallization chaperone.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Self-assembly for electronics

Self-assembly, a process in which molecules, polymers, and particles are driven by local interactions to organize into patterns and functional structures, is being exploited in advancing silicon electronics and in emerging, unconventional electronics. Additionally, silicon electronics has relied on lithographic patterning of polymer resists at progressively smaller lengths to scale down device dimensions. Yet, this has become increasingly difficult and costly. Assembly of block copolymers and colloidal nanoparticles allows resolution enhancement and the definition of essential shapes to pattern circuits and memory devices. As we look to a future in which electronics are integrated at large numbers and in new forms for the Internet of Things and wearable and implantable technologies, we also explore a broader material set. Semiconductor nanoparticles and biomolecules are prized for their size-, shape-, and composition-dependent properties and for their solution-based assembly and integration into devices that are enabling unconventional manufacturing and new device functions.

36 MATERIALS SCIENCE↗
DOE OSTI2019

Lessons Learned Assembling the SSR1 Cavities String for PIP-II

The string assembly of the prototype Single Spoke Resonator type 1 (SSR1) cryomodule for PIP-II at Fermilab was successfully completed. Lessons learned from the preparation, assembly and the quality control activities of the final fully integrated assembly will be presented.

43 PARTICLE ACCELERATORS↗
DOE OSTI2017

Modeling the self-assembly of ordered nanoporous materials

This report describes progress on a collaborative project on the multiscale modeling of the assembly processes in the synthesis of nanoporous materials. Such materials are of enormous importance in modern technology with application in the chemical process industries, biomedicine and biotechnology as well as microelectronics. The project focuses on two important classes of materials: i) microporous crystalline materials, such as zeolites, and ii) ordered mesoporous materials. In the first case the pores are part of the crystalline structure, while in the second the structures are amorphous on the atomistic length scale but where surfactant templating gives rise to order on the length scale of 2 - 20 nm. We have developed a modeling framework that encompasses both these kinds of materials. Our models focus on the assembly of corner sharing silica tetrahedra in the presence of structure directing agents. We emphasize a balance between sufficient realism in the models and computational tractibility given the complex many-body phenomena. We use both on-lattice and off-lattice models and the primary computational tools are Monte Carlo simulations with sampling techniques and ensembles appropriate to specific situations. Our modeling approach is the first to capture silica polymerization, nanopore crystallization, and mesopore formation through computer-simulated self assembly.

36 MATERIALS SCIENCE↗
DOE OSTI2017

BWR Full Fuel Assembly Testing and Validation

This report describes the Consortium for Advanced Simulation of Light Water Reactors (CASL) work conducted for completion of the Thermal Hydraulics Methods (THM) Level 3 milestone THM.CLS.P15.10: BWR Full Fuel Assembly Testing and Validation. The extension of existing boiling closure designed for Pressurized Water Reactors (PWRs) to the high void fraction condition of Boiling Water Reactors (BWRs) is one of the challenges for Multiphase Computational Fluid Dynamics (M-CFD) applications. In the efforts aimed at developing the advanced boiling closure for BWRs, the baseline closure model, so-called ‘Zero’ closure, has been developed based on the GEN-I closure for PWRs which was used as a starting point. Since this simplest closure model is robust but does not contain any explicit description of the complex high void fraction mechanisms, the applicability of M-CFD needs to be evaluated before developing advanced closures for BWRs. To support this need, the high fidelity M-CFD simulation with Zero closure has been conducted for the BWR full fuel assembly. The capabilities of M-CFD with Zero closure were evaluated against the international OECD/NRC BFBT benchmark data. The scalability of the M-CFD application to the nuclear fuel assembly was demonstrated with the INL High Performance Computing (HPC) system. This report presents the recent view of the best practices on M-CFD for BWRs to provide a useful reference to identify and overcome common challenges in the M-CFD applications.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2019

Nalu's Linear System Assembly using Tpetra

The Nalu Exascale Wind application assembles linear systems using data structures provided by the Tpetra package in Trilinos. This note describes the initialization and assembly process. The purpose of this note is to help Nalu developers and maintainers to understand the code surrounding linear system assembly, in order to facilitate debugging, optimizations, and maintenance.

17 WIND ENERGY↗
DOE OSTI2018

Gear Test Assembly - Status Report FY2018

The gear test assembly completed testing in air and distilled water successfully under a range of loading conditions. An external torque sensor assembly was designed and added to confirm the torque readings provided by the Parker control system. Hand calculations were performed to determine the time range that the heaters could be turned on without exceeding the ASME Boiler and Pressure Vessel code Fatigue Stress Limits for 1,000,000 cycles. Transient computational fluid dynamics analyses were performed to determine the heater cycle on/off time. Steady state computational fluid dynamics analyses were performed to determine the final temperature distribution throughout the insulated assembly using a thinner but more effective insulation configuration. The initial heating tests were completed (without insulation installed) to check the heater control system. Testing of the argon pressurized seal chambers were performed and indicated the need for re-machining of several components to eliminate some leaks. Nondestructive examination of the gears continued successfully using eddy current and ultrasonic inspection techniques.

42 ENGINEERING↗
DOE OSTI2020

Gear Test Assembly - Report on Experimental Testing (FY2020)

The Gear Test Assembly (GTA) has completed Campaign #2 of in-sodium testing at the Mechanisms Engineering Test Loop (METL). Campaign #1 was conducted in 2019 and completed 19,600 cycles, correlating to 9,800 fuel assembly maneuvers. Campaign #1 was terminated following a shaft seizure caused by a failed bearing in the sodium gearbox. Campaign #2 was conducted in the spring of 2020 and completed 2,768 cycles, correlating to 1,384 fuel assembly maneuvers. Campaign #2 was terminated following elevated vibration measurements coming from the sodium gearbox. Following cleaning and disassembly, a bearing was found to have failed in the sodium gearbox. Campaign #1 used tapered roller bearings made of 52100 steel with a heat treatment from the manufacturer that allows for operation to 350°C. Campaign #2 used the same tapered roller bearings, but with no heat treatment. A new dynamic shaft seal design was used in Campaign #2 that led to significant reductions in argon consumption and graphite debris generation. A modified external gearbox system led to no external bearing failures and allowed for higher torque output. Finally, modifications to the Carbonation System led to a more effective carbonation process and all-around reduction in turnaround time.

42 ENGINEERING↗
DOE OSTI2021

Ducted Assembly Steady-State Heat Transfer Software (DASSH)

The Ducted Assembly Steady-State Heat transfer software (DASSH) is being developed at Argonne National Laboratory to perform a steady-state thermal fluids calculation to determine the coolant flow and temperature distribution for a hexagonal reactor core configuration with ducted assemblies. DASSH is intended to be used in the early stages of the reactor design process when assembly components can be undefined or are undergoing considerable design changes. DASSH provides a rapid assessment of the temperature and flow distribution to allow quick characterization of the system and identification of problem areas. This document is a guide for DASSH users. It summarizes the core capabilities of DASSH and highlights differences between DASSH and SE2-ANL. Instructions for obtaining and installing DASSH are provided along with some guidelines and recommendations for newer Python users. It covers the structure of the input file, provides directions for running DASSH, describes the various output files produced by the code, and provides instructions for visualizing data. Examples demonstrating various DASSH options are included. DASSH is under active development, so it is anticipated that this guide will grow and evolve as the code is updated.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗