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At least 1,099 records · Page 61

ULTRA-DEEP GEMINI NEAR-INFRARED OBSERVATIONS OF THE BULGE GLOBULAR CLUSTER NGC 6624

We used ultra-deep J and K {sub s} images secured with the near-infrared (NIR) GSAOI camera assisted by the multi-conjugate adaptive optics system GeMS at the GEMINI South Telescope in Chile, to obtain a ( K {sub s} , J - K {sub s} ) color–magnitude diagram (CMD) for the bulge globular cluster NGC 6624. We obtained the deepest and most accurate NIR CMD from the ground for this cluster, by reaching K {sub s} ∼ 21.5, approximately 8 mag below the horizontal branch level. The entire extension of the Main Sequence (MS) is nicely sampled and at K {sub s} ∼ 20 we detected the so-called MS “knee” in a purely NIR CMD. By taking advantage of the exquisite quality of the data, we estimated the absolute age of NGC 6624 ( t {sub age} = 12.0 ± 0.5 Gyr), which turns out to be in good agreement with previous studies in the literature. We also analyzed the luminosity and mass functions of MS stars down to M ∼ 0.45 M{sub ⊙}, finding evidence of a significant increase of low-mass stars at increasing distances from the cluster center. This is a clear signature of mass segregation, confirming that NGC 6624 is in an advanced stage of dynamical evolution.

79 ASTRONOMY AND ASTROPHYSICS↗

Synroc Waste-forms for Immobilization of Advanced Reprocessing Wastes - 16167

EURO-GANEX, an advanced reprocessing technology, aims to separate both major (U, Pu) and minor (Np, Am, and Cm) actinides together from fission products. As the final waste composition is free from actinides - as opposed to current process waste, e.g. from PUREX - adapted immobilization matrices need to be developed. Synroc is a potential wasteform that has proven itself to be efficient to immobilize high-level nuclear wastes (HLW). In this study, a new composition of Synroc, 'Synroc-Z', is designed and characterized. The primary modification is to reduce the amount of zirconolite phase, which acts as the main host for actinides. The optimum hot-press conditions for Synroc-Z samples with a waste loading of 20 wt% were determined to be: 1200 deg. C and 20 MPa for 3 h. The durability of Synroc-Z was examined via the MCC-1 test at 90 deg. C. It shows similar leach resistance to Synroc-C, which is much better than current glass waste-forms. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

A new μ -high energy resolution fluorescence detection microprobe imaging spectrometer at the Stanford Synchrotron Radiation Lightsource beamline 6-2

In this report we describe a new synchrotron X-ray Fluorescence (XRF) imaging instrument with an integrated High Energy Fluorescence Detection X-ray Absorption Spectroscopy (HERFD-XAS) spectrometer at the Stanford Synchrotron Radiation Lightsource at beamline 6-2. The X-ray beam size on the sample can be defined via a range of pinhole apertures or focusing optics. XRF imaging is performed using a continuous rapid scan system with sample stages covering a travel range of 250 × 200 mm 2 , allowing for multiple samples and/or large samples to be mounted. The HERFD spectrometer is a Johann-type with seven spherically bent 100 mm diameter crystals arranged on intersecting Rowland circles of 1 m diameter with a total solid angle of about 0.44% of 4π sr. A wide range of emission lines can be studied with the available Bragg angle range of ~64.5°–82.6°. With this instrument, elements in a sample can be rapidly mapped via XRF and then selected features targeted for HERFD-XAS analysis. Furthermore, utilizing the higher spectral resolution of HERFD for XRF imaging provides better separation of interfering emission lines, and it can be used to select a much narrower emission bandwidth, resulting in increased image contrast for imaging specific element species, i.e., sparse excitation energy XAS imaging. This combination of features and characteristics provides a highly adaptable and valuable tool in the study of a wide range of materials.

47 OTHER INSTRUMENTATION↗

Multiclass Classification Using Bayesian Multivariate Adaptive Regression Splines

We present a new Bayesian model for the problem of multiclass classification. In this model, the probabilities of class membership of a given observation are determined by the mean of a latent Gaussian distribution. The mean functions of this latent distribution consist of combinations of highly flexible basis functions of the inputs: multivariate adaptive regression splines (MARS), first developed for multiple regression. We use reversible jump Markov chain Monte Carlo to make inference on the classification model, including the number of basis functions. We compare the probabilistic classification performance of our proposed approach to existing methods on simulated and benchmark data, and compare uncertainty estimates on simulated data. Our proposed method compares favorably with existing Bayesian and frequentist multiclass classification methods in out-of-sample probabilistic classification, and uncertainty estimation of these probabilistic classifications. We examine the fit of the proposed method to a data set of hurricane storm surge levels near Delaware Bay, US, and conclude that sea level rise is a key contributor to damage delivered by storm surge.

97 MATHEMATICS AND COMPUTING↗

Comparative transcriptomics between Synechococcus PCC 7942 and Synechocystis PCC 6803 provide insights into mechanisms of adaptation to stress.

Background: Synechococcus sp. PCC 7942 and Synechocystis sp. PCC 6803 are model cyanobacteria from which the metabolism and adaptive responses of other cyanobacteria are inferred. Here we report the gene expression response of these two strains to a variety of nutrient and environmental stresses of varying duration, using transcriptomics. Our data comprise both stranded and 5' enriched libraries in order to elucidate many aspects of the transcriptome. Results: Both organisms were exposed to stress conditions due to nutrient deficiency (inorganic carbon) or change of environmental conditions (salinity, temperature, pH, light) sampled at 1 and 24 hours after the application of stress. The transcriptome profile of each strain revealed similarities and differences in gene expression for photosynthetic and respiratory electron transport chains and carbon fixation. Transcriptome profiles also helped us improve the structural annotation of the genome and identify possible missed genes (including anti-sense) and determine transcriptional units (operons). Finally, we predicted association of proteins of unknown function biochemical pathways by associating them to well-characterized ones based on their transcript levels correlation. Conclusions: Overall, this study results an informative annotation of those species and the comparative analysis of the response of the two organisms revealed similarities but also significant changes in the way they respond to external stress and the duration of the response

59 BASIC BIOLOGICAL SCIENCES↗

A miniaturized feedstocks-to-fuels pipeline for screening the efficiency of deconstruction and microbial conversion of lignocellulosic biomass

Sustainably grown biomass is a promising alternative to produce fuels and chemicals and reduce the dependency on fossil energy sources. However, the efficient conversion of lignocellulosic biomass into biofuels and bioproducts often requires extensive testing of components and reaction conditions used in the pretreatment, saccharification, and bioconversion steps. This restriction can result in a significant and unwieldy number of combinations of biomass types, solvents, microbial strains, and operational parameters that need to be characterized, turning these efforts into a daunting and time-consuming task. Here we developed a high-throughput feedstocks-to-fuels screening platform to address these challenges. The result is a miniaturized semi-automated platform that leverages the capabilities of a solid handling robot, a liquid handling robot, analytical instruments, and a centralized data repository, adapted to operate as an ionic-liquid-based biomass conversion pipeline. The pipeline was tested by using sorghum as feedstock, the biocompatible ionic liquid cholinium phosphate as pretreatment solvent, a “one-pot” process configuration that does not require ionic liquid removal after pretreatment, and an engineered strain of the yeast Rhodosporidium toruloides that produces the jet-fuel precursor bisabolene as a conversion microbe. By the simultaneous processing of 48 samples, we show that this configuration and reaction conditions result in sugar yields (~70%) and bisabolene titers (~1500 mg/L) that are comparable to the efficiencies observed at larger scales but require only a fraction of the time. We expect that this Feedstocks-to-Fuels pipeline will become an effective tool to screen thousands of bioenergy crop and feedstock samples and assist process optimization efforts and the development of predictive deconstruction approaches.

09 BIOMASS FUELS↗

Spectral X-ray Radiography for Safeguards at Nuclear Fuel Fabrication Facilities: A Feasibility Study

The methods currently used by the International Atomic Energy Agency to account for nuclear materials at fuel fabrication facilities are time consuming and require in-field chemistry and operation by experts. Spectral X-ray radiography, along with advanced inverse algorithms, is an alternative inspection that could be completed noninvasively, without any in-field chemistry, with inspections of tens of seconds. The proposed inspection system and algorithms are presented here. The inverse algorithm uses total variation regularization and adaptive regularization parameter selection with the unbiased predictive risk estimator. Performance of the system is quantified with simulated X-ray inspection data and sensitivity of the output is tested against various inspection system instabilities. Material quantification from a fully-characterized inspection system is shown to be very accurate, with biases on nuclear material estimations of < 0.02%. It is shown that the results are sensitive to variations in the fuel powder sample density and detector pixel gain, which increase biases to 1%. Options to mitigate these inaccuracies are discussed.

Gilbert, Andrew J.↗

Delineating Facies Spatial Distribution by Integrating Ensemble Data Assimilation and Indicator Geostatistics with Level Set Transformation.

A new approach is developed to delineate the spatial distribution of discrete facies (geological units that have unique distributions of hydraulic, physical, and/or chemical properties) conditioned not only on direct data (measurements directly related to facies properties, e.g., grain size distribution obtained from borehole samples) but also on indirect data (observations indirectly related to facies distribution, e.g., hydraulic head and tracer concentration). Our method integrates for the first time ensemble data assimilation with traditional transition probability-based geostatistics. The concept of level set is introduced to build shape parameterization that allows transformation between discrete facies indicators and continuous random variables. The spatial structure of different facies is simulated by indicator models using conditioning points selected adaptively during the iterative process of data assimilation. To evaluate the new method, a two-dimensional semi-synthetic example is designed to estimate the spatial distribution and permeability of two distinct facies from transient head data induced by pumping tests. The example demonstrates that our new method adequately captures the spatial pattern of facies distribution by imposing spatial continuity through conditioning points. The new method also reproduces the overall response in hydraulic head field with better accuracy compared to data assimilation with no constraints on spatial continuity on facies.

97 MATHEMATICS AND COMPUTING↗

Comparison of Oxidation Performance of Graphite Samples in TGA versus Vertical Furnace

Oxidation influences the working life of nuclear graphite and can impact function during or after air (or steam) ingress accidents. Temperature, gas flow, oxygen content, and dimensional constraints at the microstructural and macrostructural levels can substantially influence the oxidation rate. The nature of these constraints must be considered when attempting to extrapolate performance from experimental results to service applications, but must also be evaluated in order to compare data among disparate experimental systems. This work compares oxidation test performance from a vertical furnace system (functioning as described by ASTM D7542) with tests using a thermogravimetric analyzer (TGA) adapted to operate in an analogous manner.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Automated Nanoflow Two-Dimensional Reversed-Phase Liquid Chromatography System Enables In-Depth Proteome and Phosphoproteome Profiling of Nanoscale Samples

Two-dimensional reversed-phase liquid chromatography (2D RPLC) separations have enabled near-comprehensive proteome profiling of biological systems. However, large samples containing milligram amounts of protein are usually required due to the significant sample losses incurred during offline fractionation. The large sample requirements preclude the application of 2D RPLC to biological systems having sample availability in the nanogram to low-microgram range. To achieve in-depth proteomic studies of trace samples, we have developed an automated nanoflow 2D RPLC platform in which the first dimension high-pH fractionation was performed at 300 nL/min on a 75-µm i.d. capillary column.Each fraction was then fully transferred to a second-dimension nanoLC separation using an autosampler equipped with a custom-machined syringe. In addition to optimizing fractionation conditions, we found that the use of a plastic 96-well plate as collection device and the adding of n-Dodecyl ß-D-Maltoside (0.01%) in the collection buffer can significantly improve sample recovery. We have demonstrated the nanoflow 2D RPLC platform can achieve confident identifications of ~37,000–69,000 unique peptides, corresponding to ~5300–6900 protein groups using only 100 to 1000 ng of HeLa tryptic digest. Furthermore, by integrating phosphopeptide enrichment, the platform can identify as many as ~20,000 phosphopeptides from 100 µg of MCF7 protein digest. Because this platform is assembled from commercially available components, our approach can be readily adapted in other proteomics laboratories.

Mass spectrometry, multidimensional separations, n↗

PLANETS AROUND LOW-MASS STARS (PALMS). IV. THE OUTER ARCHITECTURE OF M DWARF PLANETARY SYSTEMS

We present results from a high-contrast adaptive optics imaging search for giant planets and brown dwarfs (≳1 M {sub Jup}) around 122 newly identified nearby (≲40 pc) young M dwarfs. Half of our targets are younger than 135 Myr and 90% are younger than the Hyades (620 Myr). After removing 44 close stellar binaries (implying a stellar companion fraction of >35.4% ± 4.3% within 100 AU), 27 of which are new or spatially resolved for the first time, our remaining sample of 78 single M dwarfs makes this the largest imaging search for planets around young low-mass stars (0.1-0.6 M {sub ☉}) to date. Our H- and K-band coronagraphic observations with Keck/NIRC2 and Subaru/HiCIAO achieve typical contrasts of 12-14 mag and 9-13 mag at 1'', respectively, which correspond to limiting planet masses of 0.5-10 M {sub Jup} at 5-33 AU for 85% of our sample. We discovered four young brown dwarf companions: 1RXS J235133.3+312720 B (32 ± 6 M {sub Jup}; L0{sub −1}{sup +2}; 120 ± 20 AU), GJ 3629 B (64{sub −23}{sup +30} M {sub Jup}; M7.5 ± 0.5; 6.5 ± 0.5 AU), 1RXS J034231.8+121622 B (35 ± 8 M {sub Jup}; L0 ± 1; 19.8 ± 0.9 AU), and 2MASS J15594729+4403595 B (43 ± 9 M {sub Jup}; M8.0 ± 0.5; 190 ± 20 AU). Over 150 candidate planets were identified; we obtained follow-up imaging for 56% of these but all are consistent with background stars. Our null detection of planets enables strong statistical constraints on the occurrence rate of long-period giant planets around single M dwarfs. We infer an upper limit (at the 95% confidence level) of 10.3% and 16.0% for 1-13 M {sub Jup} planets between 10-100 AU for hot-start and cold-start (Fortney) evolutionary models, respectively. Fewer than 6.0% (9.9%) of M dwarfs harbor massive gas giants in the 5-13 M {sub Jup} range like those orbiting HR 8799 and β Pictoris between 10-100 AU for a hot-start (cold-start) formation scenario. The frequency of brown dwarf (13-75 M {sub Jup}) companions to single M dwarfs between 10-100 AU is 2.8{sub −1.5}{sup +2.4}%. Altogether we find that giant planets, especially massive ones, are rare in the outskirts of M dwarf planetary systems. Although the first directly imaged planets were found around massive stars, there is currently no statistical evidence for a trend of giant planet frequency with stellar host mass at large separations as predicted by the disk instability model of giant planet formation.

79 ASTRONOMY AND ASTROPHYSICS↗

GPU-Accelerated Analytic Simulation of Sparse Ionization Signal Formation in Pixelated Projection Detector

This paper presents a GPU-accelerated simulation package, TRED, for next-generation neutrino detectors with pixelated charge readout, leveraging community-driven software ecosystems to ensure adaptability and extensibility. We introduce two generic contributions: (i) an effective-charge representation based on Gaussian quadrature rules, in which the linear- interpolation factors for the field response inside each voxel are absorbed into the effective charge, and (ii) a sparse, block- binned tensor representation that enables efficient FFT-based computation of induced signals on readout electrodes for sparsely activated detector volumes. The former captures structure inside a voxel without dense sampling, while the latter achieves low memory usage and scalable runtime, as demonstrated in bench- mark studies. The underlying data representation is applicable to large-scale detectors and to other computational problems involving sparse activity.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A novel methodology for 3D deformable dosimetry

Purpose: Interfraction and intrafraction variation in anatomic structures is a significant challenge in contemporary radiotherapy. The objective of this work is to develop a novel tool for deformable structure dosimetry, using a tissue-equivalent deformable gel dosimeter that can reproducibly simulate targets subject to deformation. This will enable direct measurement of integrated doses delivered in different deformation states, and the verification of dose deforming algorithms. Methods: A modified version of the nPAG polymer gel has been used as a deformable 3D dosimeter and phantom to investigate doses delivered to deforming tissue-equivalent geometry. The deformable gel (DEFGEL) dosimeter/phantom is comprised of polymer gel in a latex membrane, moulded (in this case) into a cylindrical geometry, and deformed with an acrylic compressor. Fifteen aluminium fiducial markers (FM) were implanted into DEFGEL phantoms and the reproducibility of deformation was determined via multiple computed tomography (CT) scans in deformed and nondeformed states before and after multiple (up to 150) deformations. Dose was delivered to the DEFGEL phantom in three arrangements: (i) without deformation, (ii) with deformation, and (iii) cumulative exposures with and without deformation, i.e., dose integration. Irradiations included both square field and a stereotactic multiple dynamic arc treatment adapted from a patient plan. Doses delivered to the DEFGEL phantom were read out using cone beam optical CT. Results: Reproducibility was verified by observation of interscan shifts of FM locations (as determined via CT), measured from an absolute reference point and in terms of inter-FM distance. The majority (76%) of points exhibited zero shift, with others shifting by one pixel size consistent with setup error as confirmed with a control sample. Comparison of dose profiles and 2D isodose distributions from the three arrangements illustrated complex spatial redistribution of dose in all three dimensions occurring as a result of the change in shape of the target between irradiations, even for a relatively simple deformation. Discrepancies of up to 30% of the maximum dose were evident from dose difference maps for three orthogonal planes taken through the isocenter of a stereotactic field. Conclusions: This paper describes the first use of a tissue-equivalent, 3D dose-integrating deformable phantom that yields integrated or redistributed dosimetric information. The proposed methodology readily yields three-dimensional (3D) dosimetric data from radiation delivery to the DEFGEL phantom in deformed and undeformed states. The impacts of deformation on dose distributions were readily seen in the isodose contours and line profiles from the three arrangements. It is demonstrated that the system is potentially capable of reproducibly emulating the physical deformation of an organ, and therefore can be used to evaluate absorbed doses to deformable targets and organs at risk in three dimensions and to validate deformation algorithms applied to dose distributions.

61 RADIATION PROTECTION AND DOSIMETRY↗

Potential Risks Associated with Short-Term Hydrogen Storage in Methane Reservoirs

Hydrogen (H2) has been identified as a flexible energy carrier with zero emissions. It is possible to utilize H2 by storing Hyblend, or H2 blended with CH4, in existing natural gas infrastructure. However, the compatibility of adapting the current CH4 storage strategies to include H2 injection has not been fully demonstrated. It is essential that we understand the impact of H2 gas on the naturally occurring microbial community of subsurface storage reservoirs before deploying large-scale H2-CH4 storage. We designed a series of experiments that allowed us to identify potential challenges of HyBlend Storage in existing methane reservoirs (Figure 1). First, we characterized two field fluid samples from a methane reservoir located in Western United States. Next, we used these samples to complete a series of short-term reactor experiments at reservoir conditions for a natural gas (100% CH4) and HyBlend (80% CH4/20% H2) storage environment.

geomicrobiology↗

STEPS: A Grid Search Methodology for Optimized Peptide Identification Filtering of MS/MS Database Search Results

For bottom-up proteomics there are a wide variety of database searching algorithms in use for matching peptide sequences to tandem MS spectra. Likewise, there are numerous strategies being employed to produce a confident list of peptide identifications from the different search algorithm outputs. Here we introduce a grid search approach for determining optimal database filtering criteria in shotgun proteomics data analyses that is easily adaptable to any search. Systematic Trial and Error Parameter Selection - referred to as STEPS - utilizes user-defined parameter ranges to test a wide array of parameter combinations to arrive at an optimal "parameter set" for data filtering, thus maximizing confident identifications. The benefits of this approach in terms of numbers of true positive identifications are demonstrated using datasets derived from immunoaffinity-depleted blood serum and a bacterial cell lysate, two common proteomics sample types.

Environmental Molecular Sciences Laboratory↗

Mechanochemical synthesis of layered hydroxy salts

Highlights: ► Ultrafast synthesis method was developed for the synthesis of layered hydroxy salts. ► Preparation of hydroxy single salt by this method requires only one minute. ► Hydroxy salts with variable Ni/Zn ratio could be synthesized by varying the metal contents of the starting mixture. ► This synthesis method is solvent free and environment friendly. -- Abstract: A simple one minute synthesis method was adapted for the preparation of layered hydroxy salts of copper, zinc, nickel and cadmium by grinding the metal salts with sodium hydroxide in a mortar. This solvent free method is environment friendly and fast. This method could be extended to the preparation of Ni/Zn hydroxy double salts. The Ni/Zn ratio could be varied from 1.2 to 1.9 by varying the metal contents of the precursor salts without the formation of any impurities in the sample. The prepared compounds had similar characteristics as that of the samples prepared by precipitation route. No sign of carbonate contamination was observed in any of the prepared samples.

36 MATERIALS SCIENCE↗

A reusable neural network pipeline for unidirectional fiber segmentation

Abstract Fiber-reinforced ceramic-matrix composites are advanced, temperature resistant materials with applications in aerospace engineering. Their analysis involves the detection and separation of fibers, embedded in a fiber bed, from an imaged sample. Currently, this is mostly done using semi-supervised techniques. Here, we present an open, automated computational pipeline to detect fibers from a tomographically reconstructed X-ray volume. We apply our pipeline to a non-trivial dataset by Larson et al . To separate the fibers in these samples, we tested four different architectures of convolutional neural networks. When comparing our neural network approach to a semi-supervised one, we obtained Dice and Matthews coefficients reaching up to 98%, showing that these automated approaches can match human-supervised methods, in some cases separating fibers that human-curated algorithms could not find. The software written for this project is open source, released under a permissive license, and can be freely adapted and re-used in other domains.

79 ASTRONOMY AND ASTROPHYSICS↗