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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

High-redshift quasars along the main sequence

The 4D Eigenvector 1 empirical formalism (4DE1) and its main sequence (MS) for quasars has emerged as a powerful tool for organising the diversity among quasar populations, as several key observational measures and physical parameters are systematically changing along it. Trends revealed by 4DE1 are very well established to explain all the diverse characteristics seen in low-redshift quasar samples. Nevertheless, the situation is far less clear when dealing with high-luminosity and high-redshift sources. Here, we aim to evaluate the behaviour of our sample of 22 quasars at high redshift (2.2 ≤ z ≤ 3.7) and high luminosity (47.39 ≤ L bol ≤ 48.36) in the context of the 4DE1. Our approach involves studying quasar physics through a spectroscopic exploration of UV and optical emission line diagnostics. We used new observations from the ISAAC instrument at ESO-VLT and primarily from the SDSS to cover the optical and the UV rest-frames, respectively. The emission lines were characterised both via a quantitative parametrisation of the line profiles and a decomposition of the emission line profiles using multicomponent fitting routines. We provide spectrophotometric properties and line profile measurements for Hβ+[O III]λλ4959,5007, as well as Si IVλ1397+O IV]λ1402, C IVλ1549+He IIλ1640, and the 1900 Å blend (including Al IIIλ1860, Si III]λ1892, and C III]λ1909). For six out of the 22 objects, a significantly blueshifted component on the Hβ profile is present. In 14 out of 22 cases, an Hβ outflowing component associated with [O III] is detected. The majority of [O III]λλ4959,5007 emission line profiles show blueshifted velocities higher than 250 km s -1 . We find extremely broad [O III]λλ4959,5007 emission that is comparable to the width of Hβ broad profile in some highly accreting quasars. The [O III]λλ4959,5007 and C IVλ1549 blueshifts show very high amplitudes and a high degree of correlation. The line widths and shifts are correlated for both [O III]λλ4959,5007 and C IVλ1549, suggesting that emission from outflowing gas is providing a substantial broadening effect to both lines. Otherwise, the links between C IVλ1549 centroid velocity at half intensity (c(1/2)), Eddington ratio (L/L Edd ), and bolometric luminosity are found to be in agreement with previous studies of high-luminosity quasars. Our analysis suggests that the behaviour of quasars of very high luminosity all along the main sequence is strongly affected by powerful outflows involving a broad range of spatial scales. The main sequence correlations remain valid at high redshift and high luminosity even if a systematic increase in line width is observed. Scaling laws based on UV Al IIIλ1860 and Hβ emission lines are equally reliable estimators of M BH .

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Thermal interfaces in dynamic compression experiments

Temperature is a difficult thermodynamic variable to measure in dynamic compression experiments. Optical pyrometry is a general-purpose technique for measuring temperature from a radiant surface, but that surface is often the interface between distinct materials with temperatures that vary spatially along the loading direction. This leads to a fundamental problem: how does the measured interface temperature relate to this temperature profile along the compression axis? Numerical analysis of loading history and thermal diffusion at these interfaces shows that seemingly subtle changes in experiment geometry can lead to very different temperature profiles. We compare these results to laboratory temperature measurements of shock-compressed tin.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2020

General approaches for shear-correcting coordinate transformations in Bragg coherent diffraction imaging. Part I

This two-part article series provides a generalized description of the scattering geometry of Bragg coherent diffraction imaging (BCDI) experiments, the shear distortion effects inherent in the 3D image obtained from presently used methods and strategies to mitigate this distortion. Part I starts from fundamental considerations to present the general real-space coordinate transformation required to correct this shear, in a compact operator formulation that easily lends itself to implementation with available software packages. Such a transformation, applied as a final post-processing step following phase retrieval, is crucial for arriving at an undistorted, correctly oriented and physically meaningful image of the 3D crystalline scatterer. As the relevance of BCDI grows in the field of materials characterization, the available sparse literature that addresses the geometric theory of BCDI and the subsequent analysis methods are generalized here. This geometrical aspect, specific to coherent Bragg diffraction and absent in 2D transmission CDI experiments, gains particular importance when it comes to spatially resolved characterization of 3D crystalline materials in a reliable nondestructive manner. This series of articles describes this theory, from the diffraction in Bragg geometry to the corrections needed to obtain a properly rendered digital image of the 3D scatterer. Part I of this series provides the experimental BCDI community with the general form of the 3D real-space distortions in the phase-retrieved object, along with the necessary post-retrieval correction method. Part II builds upon the geometric theory developed in Part I with the formalism to correct the shear distortions directly on an orthogonal grid within the phase-retrieval algorithm itself, allowing more physically realistic constraints to be applied. Taken together, Parts I and II provide the X-ray science community with a set of generalized BCDI shear-correction techniques crucial to the final rendering of a 3D crystalline scatterer and for the development of new BCDI methods and experiments.

36 MATERIALS SCIENCE↗
DOE OSTI2022

Genetic and Antigenic Characterization of an Expanding H3 Influenza A Virus Clade in U.S. Swine Visualized by Nextstrain

Defining factors that influence spatial and temporal patterns of influenza A virus (IAV) is essential to inform vaccine strain selection and strategies to reduce the spread of potentially zoonotic swine-origin IAV. The relative frequency of detection of the H3 phylogenetic clade 1990.4.a (colloquially known as C-IVA) in U.S. swine declined to 7% in 2017 but increased to 32% in 2019. We conducted phylogenetic and phenotypic analyses to determine putative mechanisms associated with increased detection. We created an implementation of Nextstrain to visualize the emergence, spatial spread, and genetic evolution of H3 IAV in swine, identifying two C-IVA clades that emerged in 2017 and cocirculated in multiple U.S. states. Phylodynamic analysis of the hemagglutinin (HA) gene documented low relative genetic diversity from 2017 to 2019, suggesting clonal expansion. The major H3 C-IVA clade contained an N156H amino acid substitution, but hemagglutination inhibition (HI) assays demonstrated no significant antigenic drift. The minor HA clade was paired with the neuraminidase (NA) clade N2-2002B prior to 2016 but acquired and maintained an N2-2002A in 2016, resulting in a loss of antigenic cross-reactivity between N2-2002B- and -2002A-containing H3N2 strains. The major C-IVA clade viruses acquired a nucleoprotein (NP) of the H1N1pdm09 lineage through reassortment in the replacement of the North American swine-lineage NP. Instead of genetic or antigenic diversity within the C-IVA HA, our data suggest that population immunity to H3 2010.1 along with the antigenic diversity of the NA and the acquisition of the H1N1pdm09 NP gene likely explain the reemergence and transmission of C-IVA H3N2 in swine.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Single-shot measurement of the nonlinear refractive index of air at 92 µm with a picosecond terawatt CO 2 laser

We developed a simple, accurate single-shot method to determine the nonlinear refractive index of air by measuring the evolution of the spatial shape of a laser beam propagating through the atmosphere. A distinctive feature of this new method, which relies on a modified Fresnel propagation model for data analysis, is the use of a hard aperture for producing a welldefined, high-quality beam from a comparatively nonuniform quasi-flat-top beam which is typical for highpeak-power lasers. The nonlinear refractive index of air for a very short (2 ps) long-wave infrared (LWIR) laser pulse was measured for the first time, yielding n 2 = 3.0 × 10 -23 m 2 /W at 9.2 µm. This result is 40% lower than a corresponding measurement with longer (200 ps) LWIR pulses at a similar wavelength.

43 PARTICLE ACCELERATORS↗
DOE OSTI2022

Improving tide-estuary representation in MPAS-Ocean (Final Report)

The overarching goal of this research is to produce a skill-assessed tide-estuary representation, including BGC (biogeochemistry) components of the ecosystem, into the MPAS-O global climate modeling system. Specifically, in the original proposal we proposed one-way nesting, into global MPAS-O, of a high-resolution model for TES (tidal and estuary systems) including the coupling of the BGC components. We have completed the proposed tasks during the past 4 years. Specifically, after extensive consultation with the MPAS-O group during the first year, we have decided to go beyond the original proposal and to two-way nest SCHISM into MPAS-O. As a result, SCHISM-CoSiNE (with CoSiNE being the BGC model) is now fully integrated into MPAS-O as a subroutine (more precisely, an analysis member) and can be invoked as MPAS-O is running with two-way exchange of information between the TES and global models (with proper spatial interpolation done on the fly). As originally proposed, we have also developed the new finite-volume (FV) model MPAS-OI (aka ELCIRC-sub) for TES. We have conducted several tests using the coupled MPAS-SCHISM- CoSiNE model and also MPAS-OI for Columbia River, San Francisco Bay and Chesapeake Bay. Four journal publications have been produced so far as the result of the project and 1 is under review (cf. Publication section). With these achievements, we will be ready to conduct fully coupled simulations of TES and global ocean anywhere, as soon as some missing capabilities in MPAS-O (e.g. tides, improved ability to handle the boundary conditions, and streamlining of the global BGC model) are worked out. The significance of the outcome of this project cannot be overstated. It marks the first time, as far as we know, that a global climate model is tightly coupled to a bona fide nearshore and terrestrial model (SCHISM system); in fact SCHISM is the first bona fide compound flooding model that seamlessly covers the coastal ocean, estuaries, rivers and watersheds (Ye et al. 2020; Zhang et al. 2020). The coupled model will reduce the errors and uncertainties of the MPAS-O global climate model system. It also complements and extends on-going E3SM project, as the latter seeks in the long-term to include components required to simulate impacts of sea-level change and storm surge on coastal regions, including wave models and focusing resolution in coastal and storm-track regions, as an important component of the Cryosphere-ocean system. Note that a spectral wave model (the unstructured-grid version of Wave Watch III, aka Wind Wave Model) is already incorporated inside the SCHISM system and is therefore directly accessible in the coupled system.

58 GEOSCIENCES↗
DOE OSTI2022

Designing Unmanned Aerial Survey Monitoring Program to Assess Floating Litter Contamination

Monitoring marine contamination by floating litter can be particularly challenging since debris are continuously moving over a large spatial extent pushed by currents, waves, and winds. Floating litter contamination have mostly relied on opportunistic surveys from vessels, modeling and, more recently, remote sensing with spectral analysis. This study explores how a low-cost commercial unmanned aircraft system equipped with a high-resolution RGB camera can be used as an alternative to conduct floating litter surveys in coastal waters or from vessels. The study compares different processing and analytical strategies and discusses operational constraints. Collected UAS images were analyzed using three different approaches: (i) manual counting (MC), using visual inspection and image annotation with object counts as a baseline; (ii) pixel-based detection, an automated color analysis process to assess overall contamination; and (iii) machine learning (ML), automated object detection and identification using state-of-the-art convolutional neural network (CNNs). Our findings illustrate that MC still remains the most precise method for classifying different floating objects. ML still has a heterogeneous performance in correctly identifying different classes of floating litter; however, it demonstrates promising results in detecting floating items, which can be leveraged to scale up monitoring efforts and be used in automated analysis of large sets of imagery to assess relative floating litter contamination.

Almeida, Sílvia (ORCID:0000000320636826)↗
DOE OSTI2022

Formation and Reconnection of Electron Scale Current Layers in the Turbulent Outflows of a Primary Reconnection Site

We simulate with 3D particle in cell, the spontaneous formation of turbulent outflows in an initially laminar 3D reconnecting current layer. We observe the formation of many secondary current layers and reconnection sites in the outflow. The approach we follow is to study each individual feature within the turbulent outflow. To identify all clusters of current in the outflow we use a clustering technique widely used in unsupervised machine learning: density-based spatial clustering of applications with noise. Once the clusters are identified we measure their size and compute reconnection indicators to establish which are undergoing reconnection. With this analysis we establish that the size of the current clusters reaches all the way from its initial system scale down to subelectron skin depth scale. We observe that the smaller current clusters are more prone to reconnecting and to releasing energy. We then find the process of reconnection of the smaller current cluster to be of the recently observed electron-only type that leaves the ions essentially unaffected.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

The Carousel Lens: A Well-modeled Strong Lens with Multiple Sources Spectroscopically Confirmed by VLT/MUSE

Over the past few years alone, the lensing community has discovered thousands of strong lens candidates, and spectroscopically confirmed hundreds of them. In this time of abundance, it becomes pragmatic to focus our time and resources on the few extraordinary systems, in order to most efficiently study the Universe. In this paper, we present such a system: DESI-090.9854-35.9683, a cluster-scale lens at z l = 0.49, with seven observed lensed sources around the core, and additional lensed sources further out in the cluster. From the number and the textbook configuration of the lensed images, a tight constraint on the mass potential of the lens is possible. This would allow for detailed analysis on the dark and luminous matter content within galaxy clusters, as well as a probe into dark energy and high-redshift galaxies. We present our spatially resolved kinematic measurements of this system from the Very Large Telescope Multi Unit Spectroscopic Explorer, which confirm five of these source galaxies (in ascending order, at z s = 0.962, 0.962, 1.166, 1.432, and 1.432). With previous Hubble Space Telescope imaging in the F140W and F200LP bands, we also present a simple flux-based lens model consisting of two power-law profiles that, for a cluster lens, well models the five lensed arc families with redshifts. We determine the mass to be M(< θ E ) = 4.78 × 10 13 M ⊙ for the primary mass potential. From the model, we extrapolate the redshift of one of the two source galaxies not yet spectroscopically confirmed to be at $z_s = 4.52^{+1.03}_{-0.71}$.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Xanthos Output Dataset Under ISIMIP3b Selected CMIP6 Scenarios: 1850 - 2100 (Basin and Regional Scale)

Xanthos is an open-source hydrologic model, written in Python, designed to quantify and analyze global water availability. Xanthos simulates historical and future global water availability on a monthly time step at a spatial resolution of 0.5 geographic degrees. Xanthos was designed to be extensible and used by scientists that study global water supply and work with the Global Change Analysis Model (GCAM). Xanthos Output Dataset This dataset includes Xanthos outputs forced by the ISIMIP3b bias-adjusted CMIP6 climate forcing (1850 - 2100). There are 30 scenarios consists of 10 CMIP6 GCMs and 3 SSP-RCP scenarios. (1) 10 CMIP6 GCMs: GFDL-ESM4, IPSL-CM6A-LR, MPI-ESM1-2-HR, MRI-ESM2-0, UKESM1-0-LL, CanESM5, CNRM-CM6-1, CNRM-ESM2-1, EC-Earth3, and MIROC6 (2) 3 SSP-RCP Scenarios: SSP1-2.6, SSP3-7.0, and SSP5-8.5 The output variables in this dataset are aggregated to basin and regional scales. (1) Monthly runoff at basin scale (2) Annual accessible renewable water at basin scale (2) Annual actual hydropower production, hydropower potential, and exploitable hydropower potential at regional scale

Climate Change↗
DOE OSTI2023

Vis-SAGA: Visual Analytics for Situational Awareness of Grid Anomalies: Preprint

We describe supporting near real-time situational awareness of the electric distribution system by visualizing novel data from voltage sensors deployed on existing broadband cable television network equipment. Our scalable web-based visual analytics platform supports interactive geospatial exploration, time-series analysis, and summarization of grid behavior during potentially anomalous events. The broadband cable television sensor network provides observability of the electrical distribution system at a higher local spatial resolution than is typically available to most utilities, revealing the operational state of the network and aiding in the detection of abnormal behaviors or deviations from expected patterns, particularly across electric utility service areas. We outline the design and development of interactive geospatial and time-series visualization components and the scalable data services that supply metadata, historical, and real-time streams of sensor data across the network. We evaluate our platform during periods of extreme weather, demonstrating its ability to assist in detecting patterns of operation that affect power availability, quality, resiliency, and service restoration.

cable television↗
DOE OSTI2026

WM26 Paper Multi-Robot Collaboration for Hazardous Environments

Hazardous nuclear and industrial facilities are rarely designed for robots. Work in these domains demand precise manipulation and robust mobility in cluttered, constrained spaces where off-the-shelf platforms struggle and “one-size-fits-all” machines become costly and complex. Idaho National Laboratory (INL) is developing an autonomous, multi-robot inspection system that coordinates task-specific platforms rather than relying on a single omni-tool robot. An electric truck serves as a power and compute hub for a custom manipulator co-developed with Florida International University (FIU), a commercial mini crawler, a pan–tilt–zoom camera, and a Nexxis Argus LiDAR mapping system. Working in concert, these robots generate spatial, radiation, and temperature maps of the pit environments at the Hanford Waste Tank Farms. These systems will capture visual records and environmental telemetry to allow for analysis post inspection. The system architecture uses Robot Operating System 2 (ROS 2) for publish/subscribe integration, NVIDIA Isaac Sim and Unity for simulation and visualization, and algorithms such as NVBlox to fuse data into unified 3D overlays. This robot-agnostic approach reduces operator burden by enabling autonomy across heterogeneous platforms and lets each robot be used where it is strongest. Having autonomous functions means operators don’t have to fully control multiple different components. The ease of use could allow for more widespread adoption of advanced robotics at waste management sites that see continued use. By coordinating simpler, purpose-built mechanisms, the approach lowers design and manufacturing complexity, reduces capital risk in contaminated settings, and improves controllability for complex inspection and manipulation tasks. We present the architecture, early results, and lessons learned from building and deploying this coordinated multi-robot system, with the goal of accelerating safe, cost-effective adoption of advanced robotics at waste-management sites.

42 - ENGINEERING↗
DOE OSTI2026

SPT-3G D1: Quadratic-Estimator CMB Lensing Reconstruction and Cosmology

We present a map of the cosmic microwave background (CMB) lensing potential reconstructed from observations taken during the 2019 and 2020 seasons with the third-generation camera on the South Pole Telescope (SPT), covering the $1500\,{\rm deg}^{2}$ SPT-3G Main field, referred to as the SPT-3G D1 dataset. From the multi-frequency temperature and polarization data, we reconstruct the CMB lensing field using a quadratic estimator that jointly accounts for the $T$, $E$, and $B$ fields and their covariance. The resulting lensing map is dominated by polarization information for $L \lesssim 600$ and provides the highest signal-to-noise measurement per mode reported to date. With nuisance parameters fixed to their best-fit values, we measure a lensing amplitude consistent with unity at $2\%$ precision relative to the $Λ$CDM model that best fits the combined Planck, ACT DR6, and SPT-3G D1 $TT/TE/EE$ likelihoods (${\rm CMB}_{\rm SPA}$). We further measure the structure-growth parameter $σ_{8}Ω_{\rm m}^{0.25}$ to be $0.6046\pm0.0096$ from the SPT-3G D1 lensing spectrum alone and $0.6020\pm0.0084$ when combined with ACT DR6 and Planck PR4 CMB lensing. By further combining this with ${\rm CMB}_{\rm SPA}$ and the latest DESI DR2 BAO data, we obtain $\sum m_ν < 0.072\,\mathrm{eV}$ (95% C.L.) when allowing the neutrino mass to vary within $Λ$CDM. Compared with previous work, the better agreement of our measurement with DESI DR2 BAO yields both this relaxed upper bound and reduced ($\mathord{\sim}2σ$) preferences for nonzero spatial curvature and for deviations of $(w_0,w_a)$ from the $Λ$CDM expectation. When we combine CMB lensing with the DES Y3 3$\times$2pt analysis, we obtain $S_{8}=0.811\pm0.011$, corresponding to a $1.4\%$ constraint on the late-time clustering amplitude. This precision is competitive with that obtained from the primary CMB within $Λ$CDM.

Omori, Y. [Chicago U., Astron. Astrophys. Ctr.; Ch↗
DOE OSTI2023

Enabling Hyper-Differential Sensitivity Analysis for Ill-Posed Inverse Problems

Inverse problems constrained by partial differential equations (PDEs) play a critical role in model development and calibration. In many applications, there are multiple uncertain parameters in a model that must be estimated. However, high dimensionality of the parameters and computational complexity of the PDE solves make such problems challenging. A common approach is to reduce the dimension by fixing some parameters (which we will call auxiliary parameters) to a best estimate and use techniques from PDE-constrained optimization to estimate the other parameters. In this article, hyper-differential sensitivity analysis (HDSA) is used to assess the sensitivity of the solution of the PDE-constrained optimization problem to changes in the auxiliary parameters. Foundational assumptions for HDSA require satisfaction of the optimality conditions which are not always practically feasible as a result of ill-posedness in the inverse problem. Here we introduce novel theoretical and computational approaches to justify and enable HDSA for ill-posed inverse problems by projecting the sensitivities on likelihood informed subspaces and defining a posteriori updates. Our proposed framework is demonstrated on a nonlinear multiphysics inverse problem motivated by estimation of spatially heterogeneous material properties in the presence of spatially distributed parametric modeling uncertainties.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2026

Innovative laser-based methods for monitoring fuel retention in ITER

This paper addresses the challenge of tritium inventory management in ITER and future fusion reactors, highlighting the importance of accurate tritium measurement and its spatial distribution within the vacuum vessel. Given ITER’s operational constraints, especially the limit on tritium retention, precise measurement is essential for both safety and regulatory compliance. To tackle these questions, the paper presents the T-monitor diagnostic system developed by Forschungszentrum Jülich, which uses Laser-Induced Desorption (LID) in combination with Diagnostic Residual Gas Analysis (DRGA) to measure hydrogen isotope concentrations on the surface of divertor tiles. The system integrates a high-power laser, advanced optical components, and a Fast Scanning Mirror Unit (FSMU) for accurate laser spot positioning with rapid response. Designed to measure in situ tritium retention, the diagnostic provides high-resolution spatial mapping, vital for evaluating detritiation strategies. The laser heating process increases the divertor surface temperature to 1600 K within the laser spot, promoting hydrogen isotope desorption. Accurate measurements require the precise control of laser parameters, including pulse duration and spot size, with a target relative accuracy of 20%. The optical design includes both in-vessel and ex-vessel components, such as durable high-reflectivity mirrors made of gold and copper, selected not only for their infrared performance but also for their transmission of visible wavelengths for observation purposes. To protect optical components from contamination, a pneumatic shutter is used.

Hydrogen isotopes↗
DOE OSTI2023

The Determination of the Spatial Distribution of Indigenous Lipid Biomarkers in an Immature Jurassic Sediment Using Time-of-Flight–Secondary Ion Mass Spectrometry

The ability to detect and map lipids, including potential lipid biomarkers, within a sedimentary matrix using mass spectrometry (MS) imaging may be critical to determine whether potential lipids detected in samples returned from Mars are indigenous to Mars or are contaminants. Here, we use gas chromatography–mass spectrometry (GC-MS) and time-of-flight–secondary ion mass spectrometry (ToF-SIMS) datasets collected from an organic-rich, thermally immature Jurassic geologic sample to constrain MS imaging analysis of indigenous lipid biomarkers in geologic samples. GC-MS data show that the extractable fractions are dominated by C 27 –C 30 steranes and sterenes as well as isorenieratene derivatives. ToF-SIMS spectra from organic matter-rich laminae contain a strong, spatially restricted signal for ions m/z 370.3, m/z 372.3, and m/z 386.3, which we assign to C 27 sterenes, cholestane (C 27 ), and 4- or 24-methyl steranes (C 28 ), respectively, as well as characteristic fragment ions of isorenieratene derivatives, including m/z 133.1, m/z 171.1, and m/z 237.1. We observed individual steroid spatial heterogeneity at the scale of 10's to 100's of microns. The fine-scale heterogeneity observed implies that indigenous lipid biomarkers concentrated within specific regions may be detectable via ToF-SIMS in samples with even low amounts of organic carbon, including in samples returned from Mars.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Spatial modeling algorithms for reactions and transport in biological cells

Biological cells rely on precise spatiotemporal coordination of biochemical reactions to control their functions. Such cell signaling networks have been a common focus for mathematical models, but they remain challenging to simulate, particularly in realistic cell geometries. Here we present Spatial Modeling Algorithms for Reactions and Transport (SMART), a software package that takes in high-level user specifications about cell signaling networks and then assembles and solves the associated mathematical systems. SMART uses state-of-the-art finite element analysis, via the FEniCS Project software, to efficiently and accurately resolve cell signaling events over discretized cellular and subcellular geometries. We demonstrate its application to several different biological systems, including yes-associated protein (YAP)/PDZ-binding motif (TAZ) mechanotransduction, calcium signaling in neurons and cardiomyocytes, and ATP generation in mitochondria. Throughout, we utilize experimentally derived realistic cellular geometries represented by well-conditioned tetrahedral meshes. These scenarios demonstrate the applicability, flexibility, accuracy and efficiency of SMART across a range of temporal and spatial scales.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Mass Spectral Imaging to Map Plant–Microbe Interactions

Plant–microbe interactions are of rising interest in plant sustainability, biomass production, plant biology, and systems biology. These interactions have been a challenge to detect until recent advancements in mass spectrometry imaging. Plants and microbes interact in four main regions within the plant, the rhizosphere, endosphere, phyllosphere, and spermosphere. This mini review covers the challenges within investigations of plant and microbe interactions. We highlight the importance of sample preparation and comparisons among time-of-flight secondary ion mass spectroscopy (ToF-SIMS), matrix-assisted laser desorption/ionization (MALDI), laser desorption ionization (LDI/LDPI), and desorption electrospray ionization (DESI) techniques used for the analysis of these interactions. Using mass spectral imaging (MSI) to study plants and microbes offers advantages in understanding microbe and host interactions at the molecular level with single-cell and community communication information. More research utilizing MSI has emerged in the past several years. We first introduce the principles of major MSI techniques that have been employed in the research of microorganisms. An overview of proper sample preparation methods is offered as a prerequisite for successful MSI analysis. Traditionally, dried or cryogenically prepared, frozen samples have been used; however, they do not provide a true representation of the bacterial biofilms compared to living cell analysis and chemical imaging. New developments such as microfluidic devices that can be used under a vacuum are highly desirable for the application of MSI techniques, such as ToF-SIMS, because they have a subcellular spatial resolution to map and image plant and microbe interactions, including the potential to elucidate metabolic pathways and cell-to-cell interactions. Promising results due to recent MSI advancements in the past five years are selected and highlighted. The latest developments utilizing machine learning are captured as an important outlook for maximal output using MSI to study microorganisms.

59 BASIC BIOLOGICAL SCIENCES↗