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DOE OSTI2022

Supporting hierarchical soil biogeochemical modeling: version 2 of the Biogeochemical Transport and Reaction model (BeTR-v2)

Abstract. Reliable soil biogeochemical modeling is a prerequisite for credible projections of climate change and associated ecosystem feedbacks. This recognition has called for frameworks that can support flexible and efficient development and application of new or alternative soil biogeochemical modules in Earth system models (ESMs). The the Biogeochemical Transport and Reaction model version 1 (BeTR-v1) code (i.e., CLM4-BeTR) is one such framework designed to accelerate the development and integration of new soil biogeochemistry formulations into ESMs and to analyze structural uncertainty in ESM simulations. With a generic reactive transport capability, BeTR-v1 can represent multiphase (e.g., gaseous, aqueous, and solid), multi-tracer (e.g., nitrate and organic carbon), and multi-organism (e.g., plants, bacteria, and fungi) dynamics. Here, we describe the new version, Biogeochemical Transport and Reaction model version 2 (BeTR-v2), which adopts more robust numerical solvers for multiphase diffusion and advection and coupling between biogeochemical reactions and improves code modularization over BeTR-v1. BeTR-v2 better supports different mathematical formulations in a hierarchical manner by allowing the resultant model be run for a single topsoil layer or a vertically resolved soil column, and it allows the model to be fully coupled with the land component of the Energy Exascale Earth System Model (E3SM). We demonstrate the capability of BeTR-v2 with benchmark cases and example soil biogeochemical (BGC) implementations. By taking advantage of BeTR-v2's generic structure integrated in E3SM, we then found that calibration could not resolve biases introduced by different numerical coupling strategies of plant–soil biogeochemistry. These results highlight the importance of numerically robust implementation of soil biogeochemistry and coupling with hydrology, thermal dynamics, and plants – capabilities that the open-source BeTR-v2 provides. We contend that Earth system models should strive to minimize this uncertainty by applying better numerical solvers.

58 GEOSCIENCES↗

NASA NTRS1971

Mixing models and the recognition of end-member groups in Apollo 11 and 12 soils.

Lunar soils returned from the Apollo 11 and 12 sites appear to consist of more than one source material. Investigators have suggested that the soil can be described by as few as two end members and possibly as many as five or six. In the present study Q-mode factor analysis is used to establish the end members more rigorously and suggests that major-element chemistry of Apollo 11 and 12 lunar soils can be adequately explained in terms of a three-component mixing system. The end members isolated by Q-mode factor analysis can be regarded as basaltic, anorthositic, and noritic (or KREEP) components. Three-component mixing models fitted by least squares to the eight major oxides indicate that six of the Apollo 12 soils investigated are dominated by the basaltic component, whereas the other five are dominated by the noritic or KREEP component. Anorthosite is present in all soils except sample 12033, which is a simple two-component mixture of basalt and KREEP. The Apollo 11 soil is also a three-component mixture but is more basaltic than the Apollo 12 soils. Anorthositic and KREEP materials are important components of the lunar lithosphere and may be distributed on the lunar surface areally in an independent manner.

Lindsay, J. F.↗

NASA NTRS1972

Enzyme activity in terrestrial soil in relation to exploration of the Martian surface

An exploration was made of enzyme activities in soil, including abundance, persistence and localization of these activities. An attempt was made to develop procedures for the detection and assaying of enzymes in soils suitable for presumptive tests for life in planetary soils. A suitable extraction procedure for soil enzymes was developed and measurements were made of activities in extracts in order to study how urease is complexed in soil organic matter. Mathematical models were developed, based on enzyme action and microbial growth in soil, for rates of oxidation of nitrogen as nitrogen compounds are moved downward in soil by water flow. These biogeochemical models should be applicable to any percolating system, with suitable modification for special features, such as oxygen concetrations, and types of hydrodynamic flow.

Ardakani, M. S.↗

NASA NTRS1973

ERTS data user no. 119: Effective use of ERTS multisensor data in the Great Plains. ERTS-1 MSS imagery: A tool for identifying soil associations

The author has identified the following significant results. Soil association maps show the spatial relationships of land units developed in unique climatic, geologic, and topographic environments, and having characteristic slopes, soil depths, textures, available water capacities, permeabilities, and the like. ERTS-1 imagery was found to be a useful tool in the identification of soil associations since it provides a synoptic view of an 8 million acre scene, which is large enough so that the effect can be seen on soils of climate, topography, and geology. A regional view also allows soil associations to be observed over most, if not all, of their extent. ERTS-1 MSS imagery also provides four spectral bands taken every 18 days which give data on relief, hydrology, and vegetation, all of which bear on the delineation and interpretation of soil associations. Enlarged prints derived from the individual spectral bands and shown in gray tones were useful for identifying soil associations.

Myers, V. I.↗

NASA NTRS1973

Identification of soil associations in western South Dakota on ERTS-1 imagery

Soil association maps show the spatial relationships of land units having characteristic soil depths and textures, available water capacities, permeabilities, pH characteristics, plasticity indices, liquid limits, and the like, from which broad interpretations can be made such as how the soil is suited as a source for top soil, and as a source for sand and gravel, and how corrosive the soil is for steel and concrete, and what crop and grass yields can be expected. Film color composites of bands 4, 5 and 7 viewed over a light table with magnification show the soil associations of western South Dakota that are now recognized, and, in addition, several new soil association areas have been brought to light.

Westin, F. C.↗

NASA NTRS1972

Development of soil on the lunar surface.

Discussion of the dynamic processes involved in the evolution of the lunar soil. Size, shape, and modal analyses of soil returned by Apollo 11, 12, 14, and 15, and Luna 16 indicate that the two most important dynamic processes resulting from meteorite impact are vitrification and comminution of the detrital material. The effects of the two processes are mutually opposed. As the glass content of the soil increases over an extended period of time, the statistical parameters of the mature soil tend to stabilize. Comminution probably plays a dominant role early in the development of the soil by reducing the median grain size and producing a logarithmic-normal grain-size distribution. The evolution of the soil does not necessarily progress in a regular manner. Both introduction of freshly comminuted bedrock material by small impact events, as well as local topographic effects, influence the development of the soil and reduce its maturity.

Lindsay, J. F.↗

NASA NTRS1973

ERTS-1 MSS imagery - A tool for identifying soil associations.

Soil association maps show the spatial relationships of land units developed in unique climatic, geologic, and topographic environments, and having characteristic slopes, soil depths, textures, available water capacities, permeabilities, and the like. From these characteristics of the soil, broad interpretations can be made such as how the soil is suited for various agronomic and engineering uses. ERTS-1 imagery was found to be a useful tool in the identification of soil associations since it provides a synoptic view of an 8 million acre scene, which is large enough so that the effect can be seen on soils of climate, topography, and geology. A regional view also allows soil associations to be observed over most, if not all, of their extent. This aids in selecting typical sampling sites and provides a check on the homogeniety of the associations.

Westin, F. C.↗

NASA NTRS1974

Use of visible, near-infrared, and thermal infrared remote sensing to study soil moisture

Two methods are described which are used to estimate soil moisture remotely using the 0.4- to 14.0 micron wavelength region: (1) measurement of spectral reflectance, and (2) measurement of soil temperature. The reflectance method is based on observations which show that directional reflectance decreases as soil moisture increases for a given material. The soil temperature method is based on observations which show that differences between daytime and nighttime soil temperatures decrease as moisture content increases for a given material. In some circumstances, separate reflectance or temperature measurements yield ambiguous data, in which case these two methods may be combined to obtain a valid soil moisture determination. In this combined approach, reflectance is used to estimate low moisture levels; and thermal inertia (or thermal diffusivity) is used to estimate higher levels. The reflectance method appears promising for surface estimates of soil moisture, whereas the temperature method appears promising for estimates of near-subsurface (0 to 10 cm).

Blanchard, M. B.↗

NASA NTRS1973

Identification of soil associations in South Dakota on ERTS 1 imagery

Westin, F. C.↗

NASA NTRS1973

Apollo 16 soils - Grain size analyses and petrography

Soils from South Ray Crater, North Ray Crater, and the interray area of Station 10 have a similar provenance, containing breccia fragments of low to medium metamorphic grade and low light/dark lithic fragment ratios; these appear to be characteristic of the Cayley Formation. The primary difference between soils possibly derived from North Ray and South Ray craters is in the agglutinate content. A soil from Stone Mountain (Station 4) is characterized by breccia fragments of medium to high metamorphic grade and a high light/dark lithic fragment ratio; this soil may be derived from the Descartes Formation. Differences between the selenomorphic units, the Descartes and Cayley formations, may be lithologic as well as structural. The mean grain size varies from 84 to 280 microns, and all of the samples are poorly to very poorly sorted. There appears to be a relation between the sorting, grain size, and agglutinate content, with the finer-grained, better sorted soils containing more than 30% agglutinates. 'Shadowed' soils, collected close to large boulders, are similar in all respects to the 'reference' soils collected at least 5 m from the boulders.

Heiken, G. H.↗

NASA NTRS1974

Use of visible, near-infrared, and thermal infrared remote sensing to study soil moisture

Two methods are used to estimate soil moisture remotely using the 0.4- to 14.0-micron wavelength region: (1) measurement of spectral reflectance, and (2) measurement of soil temperature. The reflectance method is based on observations which show that directional reflectance decreases as soil moisture increases for a given material. The soil temperature method is based on observations which show that differences between daytime and nighttime soil temperatures decrease as moisture content increases for a given material. In some circumstances, separate reflectance or temperature measurements yield ambiguous data, in which case these two methods may be combined to obtain a valid soil moisture determination. In this combined approach, reflectance is used to estimate low moisture levels; and thermal inertia (or thermal diffusivity) is used to estimate higher levels. The reflectance method appears promising for surface estimates of soil moisture, whereas the temperature method appears promising for estimates of near-subsurface (0 to 10 cm).

Blanchard, M. B.↗

NASA NTRS1974

Grain size and the evolution of lunar soils

Grain-size data are presented for Apollo-17 soils, and the relationship is considered between grain-size distribution and the processes which pulverize the soil, reconstitute it as agglutinates, and replenish it with fresh material. It is shown that a strong inverse correlation exists between mean grain size and standard deviation and that there is a correlation between grain size and agglutinate content whereby the finest samples have the highest agglutinate content. Two evolutionary sequences are described for the soils in which (1) reworking by micrometeorites predominates over mixing with other soils and (2) mixing predominates over reworking. It is shown that the final result of soil evolution may be a steady-state soil where pulverization by micrometeorites is balanced by agglutination and replenishment of coarser grains. A model is presented for such a soil, and it is argued that its grain-size distribution may depend on regolith thickness.-

Mckay, D. S.↗

NASA NTRS1975

A lunar soil evolution model

Comminution, agglutination, and replenishment processes in a lunar soil are modeled by a system of time-dependent linear differential equations. In the model, a soil is subdivided into coarse-particle, fine-particle, and agglutinate fractions. The relative mass abundance of each component in a mature soil is found to be proportional to rates for the reworking processes. Evolution of the grain-size distribution from a fresh ejecta blanket to a mature soil is described quantitatively in terms of the changing proportions of the three soil constituents. If size data are available for an immature soil and a mature soil of the same system, rates for the various processes can be calculated under certain simplifying assumptions.

Mendell, W. W.↗

NASA NTRS1976

Remote sensing of soil moisture with microwave radiometers

Results are presented that were derived from measurements made by microwave radiometers during the March 1972 and February 1973 flights of National Aeronautics and Space Administration (NASA) Convair-9900 aircraft over agricultural test sites in the southwestern part of United States. The purpose of the missions was to study the use of microwave radiometers for the remote sensing of soil moisture. The microwave radiometers covered the 0.8- to 21-cm wavelength range. The results show a good linear correlation between the observed microwave brightness temperature and moisture content of the 0- to 1-cm layer of the soil. The results at the largest wavelength (21 cm) show the greatest sensitivity to soil moisture variations and indicate the possibility of sensing these variations through a vegetative canopy. The effect of soil texture on the emission from the soil was also studied and it was found that this effect can be compensated for by expressing soil moisture as a percent of field capacity for the soil. The results were compared with calculations based on a radiative transfer model for layered dielectrics and the agreement is very good at the longer wavelengths. At the shorter wavelengths, surface roughness effects are larger and the agreement becomes poorer.

Schmugge, T.↗

NASA NTRS1975

Siderophiles and volatiles in Apollo-16 rocks and soils

The duplicate and mean concentrations of eight trace elements (Ni, Zn, Ga, Ge, Cd, In, Ir, Au) in eight Apollo-16 soils, five rocks, and a metallic spherule were determined by radiochemical neutron-activation analysis (RNAA) following radiochemical separation. Data are presented and compared with analyses of Apollo-14 samples. The concentration of extralunar components in mature Apollo-16 soils is about 3.8%, and the samples contain a large amount of pre-Imbrium regolith. Volatiles, siderophiles, and cosmogenic isotopes are intercorrelated, largely as a result of mixing of North Ray crater ejecta having low concentrations with mature soils containing high concentrations. Light soils have higher concentrations of Zn, Ga, and Cd than dark mature and submature soils, which contain comparatively higher concentration of Sc and Fe. Volatility largely controls the distributions of Zn, Cd, and In in soils and soil breccias and probably affects the Ga distribution.

Wasson, J. T.↗

NASA NTRS1977

Quantification of soil mapping by digital analysis of LANDSAT data

Soil survey mapping units are designed such that the dominant soil represents the major proportion of the unit. At times, soil mapping delineations do not adequately represent conditions as stated in the mapping unit descriptions. Digital analysis of LANDSAT multispectral scanner (MSS) data provides a means of accurately describing and quantifying soil mapping unit composition. Digital analysis of LANDSAT MSS data collected on 9 June 1973 was used to prepare a spectral soil map for a 430-hectare area in Clinton County, Indiana. Fifteen spectral classes were defined, representing 12 soil and 3 vegetation classes. The 12 soil classes were grouped into 4 moisture regimes based upon their spectral responses; the 3 vegetation classes were grouped into one all-inclusive class.

Kirschner, F. R.↗

NASA NTRS1977

Microwave remote sensing and its application to soil moisture detection

The author has identified the following significant results. Experimental measurements were utilized to demonstrate a procedure for estimating soil moisture, using a passive microwave sensor. The investigation showed that 1.4 GHz and 10.6 GHz can be used to estimate the average soil moisture within two depths; however, it appeared that a frequency less than 10.6 GHz would be preferable for the surface measurement. Average soil moisture within two depths would provide information on the slope of the soil moisture gradient near the surface. Measurements showed that a uniform surface roughness similar to flat tilled fields reduced the sensitivity of the microwave emission to soil moisture changes. Assuming that the surface roughness was known, the approximate soil moisture estimation accuracy at 1.4 GHz calculated for a 25% average soil moisture and an 80% degree of confidence, was +3% and -6% for a smooth bare surface, +4% and -5% for a medium rough surface, and +5.5% and -6% for a rough surface.

Newton, R. W.↗

NASA NTRS1978

Landsat spectral signatures - Studies with soil associations and vegetation

The effect of soils and vegetation upon Landsat spectral properties was investigated for a 12,950 hectare area. Six soil associations used for corn, small grains, and grass were analyzed for two dates during the 1974 growing season. Landsat scenes for April 19 and June 30 were studied to separate categories of agricultural land use and to assess the influence of soil association on the spectral signatures of vegetation and bare ground. The April 19 data were useful to separate cropland from grassland and to locate areas of open water. The June 30 data showed that soil associations could not consistently be separated within the data of a single vegetative type; however, the results showed that soils did influence all vegetative spectral reflectances to some degree. Because soils did influence vegetative spectral reflectance, a generalized training set containing data points from each of the six soil associations was used to separate four categories of agricultural land use in the 12,950 hectare test area. An accuracy of about 94% was obtained.

Westin, F. C.↗