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At least 1,081 records · Page 60

Streaming Large-Scale Microscopy Data to a Supercomputing Facility

Data management is a critical component of modern experimental workflows. As data generation rates increase, transferring data from acquisition servers to processing servers via conventional file-based methods is becoming increasingly impractical. The 4D Camera at the National Center for Electron Microscopy generates data at a nominal rate of 480 Gbit s -1 (87,000 frames s -1 ⁠), producing a 700 GB dataset in 15 s. To address the challenges associated with storing and processing such quantities of data, we developed a streaming workflow that utilizes a high-speed network to connect the 4D Camera’s data acquisition system to supercomputing nodes at the National Energy Research Scientific Computing Center, bypassing intermediate file storage entirely. In this work, we demonstrate the effectiveness of our streaming pipeline in a production setting through an hour-long experiment that generated over 10 TB of raw data, yielding high-quality datasets suitable for advanced analyses. Additionally, we compare the efficacy of this streaming workflow against the conventional file-transfer workflow by conducting a postmortem analysis on historical data from experiments performed by real users. Our findings show that the streaming workflow significantly improves data turnaround time, enables real-time decision-making, and minimizes the potential for human error by eliminating manual user interactions.

4D-STEM↗

ASDFL: An adaptive super‐pixel discriminative feature‐selective learning for vehicle matching

Abstract There are a large number of cameras in modern transportation system that capture numerous vehicle images continuously. Therefore, automatic analysis of these vehicle images is helpful for traffic flow management, criminal investigations and vehicle inspections. Vehicle matching, which aims to determine whether two input images depict an identical vehicle, is one of the core tasks in vehicle analysis. Recent relevant studies have focused on local feature extraction instead of global extraction, since local details can provide crucial cues to distinguish between cars. However, these methods do not select local features; that is, they do not assign weights to local features. Therefore, in this research, we systematically study the vehicle matching task, and present a novel annotation‐free local‐based deep learning method called Adaptive super‐pixel discriminative feature‐selective learning (ASDFL) to address this issue. In ASDFL, vehicle images are segmented into clusters of super‐pixels of similar size by considering the location and colour similarities of pixels without using any component‐level annotation. These super‐pixels are deemed to be the virtual components of vehicles. Moreover, a convolutional neural network is used to extract the deep features of these virtual components. Thereafter, an instance‐specific mask generation module driven by the extracted global features is enhanced to produce a mask to select the most distinctive virtual components of each vehicle image pair in the feature space. Finally, the vehicle matching task is accomplished by classifying the selected virtual component features of each imaged vehicle pair. Extensive experiments on two popular vehicle identification benchmarks demonstrate that our method is 1.57% and 0.8% more accurate than the previous baselines in a vehicle matching task on the VeRi and VehicleID datasets, respectively, which demonstrates the effectiveness of our method.

Qin, Rong↗

Performance comparison of state-of-the-art high-speed video cameras for scientific applications

Time-resolved visualization of fast processes using high-speed digital video-cameras has been widely used in most fields of scientific research for over a decade. In many applications, high-speed imaging is used not only to record the time history of a phenomenon but also to quantify it, hence requiring dependable equipment. Important aspects of two-dimensional imaging instrumentation used to qualitatively or quantitatively assess fast-moving scenes include sensitivity, linearity, as well as signal-to-noise ratio (SNR). Under certain circumstances, the weaknesses of commercially available high-speed cameras, i.e., sensitivity, linearity, image lag, etc., render the experiment complicated and uncertain. Our study evaluated two advanced CMOS-based, continuous-recording, high-speed cameras available at the moment of writing. In this work, various parameters, potentially important toward accurate time-resolved measurements and photonic quantification, have been measured under controlled conditions on the bench, using scientific instrumentation. Testing procedures to measure sensitivity, linearity, SNR, shutter accuracy, and image lag are proposed and detailed. The results of the tests, comparing the two high-speed cameras under study, are also presented and discussed. Results show that, with careful implementation and understanding of their performance and limitations, these high-speed cameras are reasonable alternatives to scientific CCD cameras, while also delivering time-resolved imaging data.

42 ENGINEERING↗

SU-G-JeP4-03: Anomaly Detection of Respiratory Motion by Use of Singular Spectrum Analysis

Purpose: The implementation and realization of automatic anomaly detection of respiratory motion is a very important technique to prevent accidental damage during radiation therapy. Here, we propose an automatic anomaly detection method using singular value decomposition analysis. Methods: The anomaly detection procedure consists of four parts:1) measurement of normal respiratory motion data of a patient2) calculation of a trajectory matrix representing normal time-series feature3) real-time monitoring and calculation of a trajectory matrix of real-time data.4) calculation of an anomaly score from the similarity of the two feature matrices. Patient motion was observed by a marker-less tracking system using a depth camera. Results: Two types of motion e.g. cough and sudden stop of breathing were successfully detected in our real-time application. Conclusion: Automatic anomaly detection of respiratory motion using singular spectrum analysis was successful in the cough and sudden stop of breathing. The clinical use of this algorithm will be very hopeful. This work was supported by JSPS KAKENHI Grant Number 15K08703.

60 APPLIED LIFE SCIENCES↗

TH-EF-207A-07: An Integrated X-Ray/bioluminescence Tomography System for Radiation Guidance and Tumor Evaluation

Purpose: CT is not able to differentiate tumors from surrounding soft tissue. This study is to develop a bioluminescence tomography (BLT) system that is integrated onto our previously developed CT guided small animal arc radiation treatment system (iSMAART) to guide radiation, monitor tumor growth and evaluate therapeutic response. Methods: The BLT system employs a CCD camera coupled with a high speed lens, and is aligned orthogonally to the x-ray beam central axis. The two imaging modalities, CT and BLT, are physically registered through geometrical calibration. The CT anatomy provides an accurate contour of animal surface which is used to construct 3D mesh for BLT reconstruction. Bioluminescence projections are captured from multiple angles, once every 45 degree rotation. The diffusion equation based on analytical Kirchhoff approximation is adopted to model the photon propagation in tissues. A discrete cosine transform based reweighted L1-norm regularization (DCT-re-L1) algorithm is used for BLT reconstruction. Experiments are conducted on a mouse orthotopic prostate tumor model (n=12) to evaluate the BLT performance, in terms of its robustness and accuracy in locating and quantifying the bioluminescent tumor cells. Iodinated contrast agent was injected intravenously to delineate the tumor in CT. The tumor location and volume obtained from CT also serve as a benchmark against BLT. Results: With our cutting edge reconstruction algorithm, BLT is able to accurately reconstruct the orthotopic prostate tumors. The tumor center of mass in BLT is within 0.5 mm radial distance of that in CT. The tumor volume in BLT is significantly correlated with that in CT (R2 = 0.81). Conclusion: The BLT can differentiate, localize and quantify tumors. Together with CT, BLT will provide precision radiation guidance and reliable treatment assessment in preclinical cancer research.

60 APPLIED LIFE SCIENCES↗

Experiments and Computational Theory for Electrical Breakdown in Critical Components: THz Imaging of Electronic Plasmas.

This report describes the development of ultra-short pulse laser (USPL) induced terahertz (THz) radiation to image electronic plasmas during electrical breakdown. The technique uses three pulses from two USPLs to (1) trigger the breakdown, (2) create a 2 picosecond (ps, 10 -12 s), THz pulse to illuminate the breakdown, and (3) record the THz image of the breakdown. During this three year internal research program, sub-picosecond jitter timing for the lasers, THz generation, high bandwidth (BW) diagnostics, and THz image acquisition was demonstrated. High intensity THz radiation was optically-induced in a pulse-charged gallium arsenide photoconductive switch. The radiation was collected, transported, concentrated, and co-propagated through an electro-optic crystal with an 800 nm USPL pulse whose polarization was rotated due to the spatially varying electric field of the THz image. The polarization modulated USPL pulse was then passed through a polarizer and the resulting spatially varying intensity was detected in a high resolution digital camera. Single shot images had a signal to noise of %7E3:1. Signal to noise was improved to %7E30:1 with several experimental techniques and by averaging the THz images from %7E4000 laser pulses internally and externally with the camera and the acquisition system (40 pulses per readout). THz shadows of metallic films and objects were also recorded with this system to demonstrate free-carrier absorption of the THz radiation and improve image contrast and resolution. These 2 ps THz pulses were created and resolved with 100 femtosecond (fs, 10 -15 s) long USPL pulses. Thus this technology has the capability to time-resolve extremely fast repetitive or single shot phenomena, such as those that occur during the initiation of electrical breakdown. The goal of imaging electrical breakdown was not reached during this three year project. However, plans to achieve this goal as part of a follow-on project are described in this document. Further modifications to improve the THz image contrast and resolution are proposed, and after they are made, images of photo-induced carriers in gallium arsenide and silicon will be acquired to evaluate image sensitivity versus carrier density. Finally electrical breakdown will be induced with the first USPL pulse, illuminated with THz radiation produced with the second USPL pulse and recorded with the third USPL pulse.

36 MATERIALS SCIENCE↗

An AI-Based 3D Bat Movement Tracking System at Wind Energy Facilities Using Multi-Thermal Video Cameras

The poster at the 15th Wind Wildlife Research Meeting discusses how to leverage the potential of real-time thermal-imaging methodologies in quantifying nocturnal bat activities at wind turbines, using 3D computer vision techniques within a deep learning framework. This innovation enables the automatic detection and classification of bats, birds, and insects in thermal-imaging videos captured at wind turbine sites, facilitating efficient and accurate data analysis for enhanced understanding and mitigation of bat-wind turbine interactions.

AI↗

An AI-Based 3D Bat Movement Tracking System at Wind Energy Facilities Using Multi-Thermal Video Cameras

The talk at the NAWEA Wind Tech 2024 conference discusses how to leverage the potential of real-time thermal-imaging methodologies in quantifying nocturnal bat activities at wind turbines, using 3D computer vision techniques within a deep learning framework. This innovation enables the automatic detection and classification of bats, birds, and insects in thermal-imaging videos captured at wind turbine sites, facilitating efficient and accurate data analysis for enhanced understanding and mitigation of bat-wind turbine interactions.

AI↗

Gait Characterization and Analysis of Hereditary Amyloidosis Associated with Transthyretin Patients: A Case Series

Hereditary amyloidosis associated with transthyretin (ATTRv), is a rare autosomal dominant disease characterized by length-dependent symmetric polyneuropathy that has gait impairment as one of its consequences. The gait pattern of V30M ATTRv amyloidosis patients has been described as similar to that of diabetic neuropathy, associated with steppage, but has never been quantitatively characterized. In this study we aim to characterize the gait pattern of patients with V30M ATTRv amyloidosis, thus providing information for a better understanding and potential for supporting diagnosis and disease progression evaluation. We present a case series in which we conducted two gait analyses, 18 months apart, of five V30M ATTRv amyloidosis patients using a 12-camera, marker based, optical system as well as six force platforms. Linear kinematics, ground reaction forces, and angular kinematics results are analyzed for all patients. All patients, except one, showed a delayed toe-off in the second assessment, as well as excessive pelvic rotation, hip extension and external transverse rotation and knee flexion (in stance and swing phases), along with reduced vertical and mediolateral ground reaction forces. The described gait anomalies are not clinically quantified; thus, gait analysis may contribute to the assessment of possible disease progression along with the clinical evaluation.

Vilas-Boas, Maria do Carmo (ORCID:000000025012789X↗

The selection of imaging systems for planetary photography from space vehicles.

Discussion of the selection of a type of imaging system for a specific mission which will maximize the return of scientific data while keeping development risk and cost to acceptable limits. A representative example is given which shows that the parameters of the optimizing process range from the scientific objectives through the engineering and programming constraints of the spacecraft and mission, to the characteristics of the types of systems. The selections for all planetary missions flown to date have been imaging systems using image tube cameras. Film cameras and mechanical scan cameras, however, have unique advantages which should find application in planetary exploration.

Smokler, M. I.↗

Automatically-focusing microscope system for live tissue observation

System includes focus-sensing arrangement which controls servo to keep microscope constantly focused on target. Microscope objective is moved along optical axis. System includes two video cameras that are used as transducers for sensing focus. Incoming visual image is split by beam splitter so that one-half of information is fed to each camera.

Mansour, M. N.↗

Earth resources experiment package sensor performance evaluation. Volume 2: S191

An S191 performance summary based on ground testing and orbital operations in terms of pertinent parameters is provided. Additional tasks covering S191 short-wavelength radiometric calibration, data-acquisition camera, and viewfinder tracking system design criteria, radiometric comparison of S190A, S191, and S192, and wavelength calibration data are included as supplemental analyses. Descriptions of techniques employed in the performance analyses are also discussed. Final results of the evaluations in terms of significant performance degradation, sensor and system anomalies, and achieved performance are presented. Conclusions were based on S191 performance and interaction of S191 with the EREP system. Recommendations for additional analyses and improvements in design and operation are presented.

Kenney, G. P.↗

Servo-controlled intravital microscope system

A microscope system is described for viewing an area of a living body tissue that is rapidly moving, by maintaining the same area in the field-of-view and in focus. A focus sensing portion of the system includes two video cameras at which the viewed image is projected, one camera being slightly in front of the image plane and the other slightly behind it. A focus sensing circuit for each camera differentiates certain high frequency components of the video signal and then detects them and passes them through a low pass filter, to provide dc focus signal whose magnitudes represent the degree of focus. An error signal equal to the difference between the focus signals, drives a servo that moves the microscope objective so that an in-focus view is delivered to an image viewing/recording camera.

Mansour, M. N.↗

Spectrophotometry of the transient X-ray source A0620-00

Optical observations of the transient X-ray source A0620-00 over the wavelength range from about 3200 to 6600 A are analyzed which were made with the 5-m Hale telescope using a multichannel spectrometer, a digital spectrograph with a cooled integrating SIT vidicon, and an image photon-counting system attached to the camera of the coude spectrograph. Infrared observations at 1.65, 2.2, and 3.5 microns are also examined. Individual spectral lines of special interest are discussed, the E(B-V) color excess is estimated to be about 0.40, and a distance of 1200 pc is adopted. Analysis of the continuous spectrum yields several simple binary models. A specific model is proposed in which one of the continuum sources is an optically thick object characterized by a model atmosphere at a temperature of 25,000 to 30,000 K and the second source is either a cool black body at 4000 K or a partially optically thick source of bound-free plus free-free radiation from a hydrogen gas with an electron temperature of at least 100,000 K. Some possible parameters of these sources and of the accretion disk are considered.

Oke, J. B.↗

Spacecraft automatic umbilical system

An umbilical system design is described that incorporates all the features specified for a power system to payload interconnect capability. A proof-of-concept prototype of the umbilical system was built to determine experimentally the suitability of the threading characteristics of the ram mechanism and to verify freedom from cross threading. It is concluded that Berthing systems that utilize remote manipulator systems (RMS) can be simplified by using RMS targets, closed circuit TV cameras, tie into the RMS control system, and grapple-fixture and end-effector-like capture and secure mechanisms. To effect a remotely controlled umbilical interconnect in proximity with a manned spacecraft and to provide for extravehicular activity backup and maintenance capabilities, 18 different mechanisms are found to be necessary. The weight impact of proving for maintenance capability in a large multiple connector umbilical system was found to be in the order of +60 percent.

Goldin, R. W.↗