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At least 1,081 records · Page 60

Simulating signatures of two-dimensional electronic spectra of the Fenna-Matthews-Olson complex: By using a numerical path integral

A framework for simulating electronic spectra from photon-echo experiments is constructed by using a numerical path integral technique. This method is non-Markovian and nonperturbative and, more importantly, is not limited by a fixed form of the spectral density functions of the environment. Next, a two-dimensional (2D) third-order electronic spectrum of a dimer system is simulated. The spectrum is in agreement with the experimental and theoretical results previously reported [for example, M. Khalil, N. Demirdöven, and A. Tokmakoff, Phys. Rev. Lett. 90, 047401 (2003)]. Finally, a 2D third-order electronic spectrum of the Fenna-Matthews-Olson (FMO) complex is simulated by using the Debye, Ohmic, and Adolphs and Renger spectral density functions. It is shown that this method can clearly produce the spectral signatures of the FMO complex by using only the Adolphs and Renger spectral density function. Plots of the evolution of the diagonal and cross-peaks show that they are oscillating with the population time.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Noise Reduction for Solar-Induced Fluorescence Retrievals Using Machine Learning and Principal Component Analysis: Simulations and Applications to GOME-2 Satellite Retrievals

We use a spectral-based approach that employs principal component analysis along with a relatively shallow artificial neural network (NN) to substantially reduce noise and other artifacts in terrestrial chlorophyll solar-induced fluorescence (SIF) retrievals. SIF is a very small emission at red and far-red wavelengths that is difficult to measure and is highly sensitive to random errors and systematic artifacts. Our approach relies upon an assumption that a trained NN can effectively reconstruct the total SIF signal from a relatively small number of leading principal components of the satellite-observed far-red radiance spectra without using information from the trailing modes that contain most of the random errors. We test the approach with simulated reflectance spectra produced with a full atmospheric and surface radiative transfer model using different observing and geophysical parameters and various noise levels. Resulting noisy and noise-reduced retrieved SIF values are compared with true values to assess performance. We then apply our noise reduction approach to SIF derived from two different satellite spectrometers. For evaluation, since the truth in this case is unknown, we compare SIF retrievals from two independent sensors with each other. We also compare the noise-reduced SIF temporal variations with those from an independent gross primary product (GPP) product that should display similar variations. Results show that our noise reduction approach improves capture of SIF seasonal and inter-annual variability. Our approach should be applicable to many noisy data products derived from spectral measurements. Our methodology does not replace the original retrieval algorithms; rather the original noisy retrievals are needed as the target for the NN training process.

noise reduction, solar-induced fluorescence, SIF, ↗

Simulating Remote Sensing Systems

The Application Research Toolbox (ART) is a collection of computer programs that implement algorithms and mathematical models for simulating remote sensing systems. The ART is intended to be especially useful for performing design-tradeoff studies and statistical analyses to support the rational development of design requirements for multispectral imaging systems. Among other things, the ART affords a capability to synthesize coarser-spatial-resolution image-data products. The ART also provides for simulations of image-degradation effects, including point-spread functions, misregistration of spectral images, and noise. The ART can utilize real or synthetic data sets, along with sensor specifications, to create simulated data sets. In one example of a particular application, simulated imagery of a coarse resolution system was created using high-resolution imagery from another system in order to perform a radiometric cross-comparison. In the case of a proposed sensor system, the simulated data can be used to conduct trade studies and statistical analyses to ensure that the sensor system will satisfy the requirements of potential scientific, academic, and commercial user communities.

Zanoni, Vicki↗

DNS of Low-Pressure Turbine Cascade Flows with Elevated Inflow Turbulence Using a Discontinuous-Galerkin Spectral-Element Method

Recent progress towards developing a new computational capability for accurate and efficient high-fidelity direct numerical simulation (DNS) and large-eddy simulation (LES) of turbomachinery is described. This capability is based on an entropy- stable Discontinuous-Galerkin spectral-element approach that extends to arbitrarily high orders of spatial and temporal accuracy, and is implemented in a computationally efficient manner on a modern high performance computer architecture. An inflow turbulence generation procedure based on a linear forcing approach has been incorporated in this framework and DNS conducted to study the effect of inflow turbulence on the suction- side separation bubble in low-pressure turbine (LPT) cascades. The T106 series of airfoil cascades in both lightly (T106A) and highly loaded (T106C) configurations at exit isentropic Reynolds numbers of 60,000 and 80,000, respectively, are considered. The numerical simulations are performed using 8th-order accurate spatial and 4th-order accurate temporal discretization. The changes in separation bubble topology due to elevated inflow turbulence is captured by the present method and the physical mechanisms leading to the changes are explained. The present results are in good agreement with prior numerical simulations but some expected discrepancies with the experimental data for the T106C case are noted and discussed.

Garai, Anirban↗

Data-Driven Invertible Neural Surrogates of Atmospheric Transmission

We present Data-Driven Invertible Neural Surrogates of Atmospheric transmission, or DINSAT. DINSAT is a novel framework for inferring an atmospheric transmission profile from a spectral scene. This framework leverages a lightweight, physics-based simulator that is automatically tuned -- by virtue of autodifferentiation and differentiable programming -- to construct a surrogate atmospheric profile to model the observed data. The framework has utility in (i) performing atmospheric correction, (ii) recasting spectral data between various modalities (e.g. radiance and reflectance at the surface and at the sensor), and (iii) inferring atmospheric transmission profiles, such as absorbing bands and their relative magnitudes. We demonstrate the utility of these methods by performing a canonical atmospheric correction task for the purposes of further analysis - in this case, target detection within a scene.

Koch, James V.↗

Damage Detection in Composite Structures with Wavenumber Array Data Processing

Guided ultrasonic waves (GUW) have the potential to be an efficient and cost-effective method for rapid damage detection and quantification of large structures. Attractive features include sensitivity to a variety of damage types and the capability of traveling relatively long distances. They have proven to be an efficient approach for crack detection and localization in isotropic materials. However, techniques must be pushed beyond isotropic materials in order to be valid for composite aircraft components. This paper presents our study on GUW propagation and interaction with delamination damage in composite structures using wavenumber array data processing, together with advanced wave propagation simulations. Parallel elastodynamic finite integration technique (EFIT) is used for the example simulations. Multi-dimensional Fourier transform is used to convert time-space wavefield data into frequency-wavenumber domain. Wave propagation in the wavenumber-frequency domain shows clear distinction among the guided wave modes that are present. This allows for extracting a guided wave mode through filtering and reconstruction techniques. Presence of delamination causes spectral change accordingly. Results from 3D CFRP guided wave simulations with delamination damage in flat-plate specimens are used for wave interaction with structural defect study.

Tian, Zhenhua↗

Computational study of three dimensional viscous flow through a turbine cascade using a multi-domain spectral technique

The three dimensional viscous flow through a planar turbine cascade is numerically simulated by direct solution of the incompressible Navier-Stokes equations. Flow dependence in the spanwise direction is represented by direct expansion in Chebyshev polynomials, while the discretization on planes parallel to the endwalls is accomplished using the spectral element method. Elemental mapping from the physical to the computational space uses an algebraic mapping technique. A fractional time stepping method that consists of an explicit nonlinear convective step, an implicit pressure correction step, and an implicit viscous step is used to advance the Navier-Stokes equations forward in time. Results computed at moderate Reynolds numbers show a three dimensional endwall flow separation, a midspan separation of the blade suction surface boundary layer, and other three-dimensional features such as the presence of a saddle point flow in the endwall region. In addition, the computed skin friction lines are shown to be orthogonal to the surface vorticity lines, demonstrating the accuracy achievable in the present method.

Renaud, Earl W.↗

Nanoflare Heating of an X-Ray Bright Point

Nanoflares are thought to be one of the prime candidates that can keep the solar corona to its multimillion kelvin temperature. Individual nanoflares are difficult to detect with the present generation instruments, however their presence can be inferred by comparing the nanoflare heated simulated plasma emissions with the observed emission. Here, we present a simulation of emission from an X-ray Bright Point (XBP) that was observed by the Marshall Grazing Incidence X-ray Spectrometer (MaGIXS), along with concurrent observations from SDO/AIA and Hinode/XRT. We use EBTEL hydrodynamic code to simulate the XBP loops. Length and magnetic field strength of these loops are derived from the potential field extrapolation of the observed photospheric magnetogram by HMI/SDO. Each loop is assumed to be heated by random nanoflares, whose magnitude and frequency are determined by the looplength and magnetic field strength. The simulated outputs are used to predict the intensity of spectrally pure map of Fe-18, Fe-17, Ne-9 ,O-8, O-9, Ne-9 etc, which are then compared with the derived intensity from MaGIXS observation. Further we have predicted the intensity map as observed by AIA and XRT and compared them with the observation. We also estimated the temperature distribution of the XBP from the simulation and found a good agreement with the derived distribution from MaGIXS observation.

coronal heating↗

Direct numerical simulation of electrokinetic instability and transition to chaotic motion

A new type of instability—electrokinetic instability—and an unusual transition to chaotic motion near a charge-selective surface (semiselective electric membrane, electrode, or system of micro-/nanochannels) was studied by the numerical integration of the Nernst-Planck-Poisson-Stokes system and a weakly nonlinear analysis near the threshold of instability. A special finite-difference method was used for the space discretization along with a semi-implicit 31/3 -step Runge-Kutta scheme for the integration in time. Two kinds of initial conditions were considered: (a) white-noise initial conditions to mimic “room disturbances” and subsequent natural evolution of the solution, and (b) an artificial monochromatic ion distribution with a fixed wave number to simulate regular wave patterns. The results were studied from the viewpoint of hydrodynamic stability and bifurcation theory. The threshold of electroconvective movement was found by the linear spectral stability theory, the results of which were confirmed by numerical simulation of the entire system. Our weakly nonlinear analysis and numerical integration of the entire system predict possibility of both kinds of bifurcations at the critical point, supercritical and subcritical, depending on the system parameters. The following regimes, which replace each other as the potential drop between the selective surfaces increases, were obtained: one-dimensional steady solution, two-dimensional steady electroconvective vortices (stationary point in a proper phase space), unsteady vortices aperiodically changing their parameters (homoclinic contour), periodic motion (limit cycle), and chaotic motion. The transition to chaotic motion does not include Hopf bifurcation. The numerical resolution of the thin concentration polarization layer showed spike-like charge profiles along the surface, which could be, depending on the regime, either steady or aperiodically coalescent. The numerical investigation confirmed the experimentally observed absence of regular (near-sinusoidal) oscillations for the overlimiting regimes. There is a qualitative agreement of the experimental and the theoretical values of the threshold of instability, the dominant size of the observed coherent structures, and the experimental and theoretical volt–current characteristics.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

L 98-59: A Benchmark System of Small Planets for Future Atmospheric Characterization

The M3V dwarf star L 98-59 hosts three small (R < 1.6 R {sub ⊕}) planets. The host star is bright (K = 7.1) and nearby (10.6 pc), making the system a prime target for follow-up characterization with the Hubble Space Telescope (HST) and the upcoming James Webb Space Telescope (JWST). Herein, we use simulated transmission spectroscopy to evaluate the detectability of spectral features with HST and JWST assuming diverse atmospheric scenarios (e.g., atmospheres dominated by H{sub 2}, H{sub 2}O, CO{sub 2}, or O{sub 2}). We find that H{sub 2}O and CH{sub 4} present in a low mean molecular weight atmosphere could be detected with HST in one transit for the two outermost planets, while H{sub 2}O in a clear steam atmosphere could be detected in six transits or fewer with HST for all three planets. We predict that observations using JWST/NIRISS would be capable of detecting a clear steam atmosphere in one transit for each planet and H{sub 2}O absorption in a hazy steam atmosphere in two transits or less. In a clear, desiccated atmosphere, O{sub 2} absorption may be detectable for all three planets with NIRISS. If the L 98-59 planets possess a clear, Venus-like atmosphere, NIRSpec could detect CO{sub 2} within 26 transits for each planet, but the presence of H{sub 2}SO{sub 4} clouds would significantly suppress CO{sub 2} absorption. The L 98-59 system is an excellent laboratory for comparative planetary studies of transiting multiplanet systems, and observations of the system via HST and JWST would present a unique opportunity to test the accuracy of the models presented in this study.

47 OTHER INSTRUMENTATION↗

Nanoflare Heating Frequency of an X-ray Bright Point Observed by MaGIXS

Nanoflares have been considered to be one of the most likely candidates for heating the solar corona to multi-million kelvin temperatures. Individual nanoflares are difficult to detect with today's instruments, but their presence may be established by comparing simulated nanoflare-heated plasma emissions to observed emissions. We present a simulation of emission from an X-ray Bright Point (XBP) detected by the MaGIXS, as well as simultaneous observations from SDO/AIA and Hinode/XRT. To simulate the XBP loops, we utilize the HYDRAD code. The length and magnetic field strength of these loops are determined using potential field extrapolation of SDO/HMI's observed photospheric magnetogram. Each loop is considered to be heated by random nanoflares, the amplitude and frequency of which are governed by the length of the loop and the strength of the magnetic field. The simulated outputs are used to estimate the intensity of spectrally pure maps of Fe-18, Fe-17, Ne-9, O-8, O-9, Ne-9, and so on, which is then compared to the intensity determined from MaGIXS observations. In addition, we derived the intensity maps obtained by AIA and XRT and compared them to the observed data. The composite distribution of the delay time of the nanoflares for which the simulated loops morphology and intensities match with observation shows a peak at 200s-500s, indicating that most of the nanoflares have a high/intermediate frequency.

coronal heating↗

THE INFRARED SPECTRUM OF PROTONATED OVALENE IN SOLID PARA-HYDROGEN AND ITS POSSIBLE CONTRIBUTION TO INTERSTELLAR UNIDENTIFIED INFRARED EMISSION

The mid-infrared emission from galactic objects, including reflection nebulae, planetary nebulae, proto-planetary nebulae, molecular clouds, etc, as well as external galaxies, is dominated by the unidentified infrared (UIR) emission bands. Large protonated polycyclic aromatic hydrocarbons (H{sup +}PAHs) were proposed as possible carriers, but no spectrum of an H{sup +}PAH has been shown to exactly match the UIR bands. Here, we report the IR spectrum of protonated ovalene (7-C{sub 32}H{sub 15} {sup +}) measured in a para -hydrogen ( p -H{sub 2}) matrix at 3.2 K, generated by bombarding a mixture of ovalene and p -H{sub 2} with electrons during matrix deposition. Spectral assignments were made based on the expected chemistry and on the spectra simulated with the wavenumbers and infrared intensities predicted with the B3PW91/6-311++G(2d,2p) method. The close resemblance of the observed spectral pattern to that of the UIR bands suggests that protonated ovalene may contribute to the UIR emission, particularly from objects that emit Class A spectra, such as the IRIS reflection nebula, NGC 7023.

79 ASTRONOMY AND ASTROPHYSICS↗

TPSAS-NF1676L-18357-DND

High-spectral resolution measurements (in the IR region) from space born infrared sensors can provide sufficient spectral information about cloud properties like cloud top pressure, cloud particle size and cloud optical thickness. Empirical orthogonal function (EOF) based regression scheme was used to retrieve cloud properties along with atmospheric state profiles. A channel based physical inversion scheme was also tried on cloud-contaminated radiances to improve retrieval accuracy achieved by regression scheme. Recently developed principle component (PC) based physical retrieval algorithm utilized the EOF transformation to compress both hyperspectral radiance spectra and atmospherical profiles into PC scores to greatly boost the computational speed while maintaining the information content. The accuracy of the (PC) based radiation transfer model (PCRTM) to simulate top-of the atmosphere(TOA) high-spectral resolution radiance spectra for both clear and cloudy sky conditions has been well tested by comparing with the other line-by-line radiation transfer model and using the observation data. The application of the PCRTM based physical inversion method on simulated IASI radiance under 'cloudy' conditions will be a good integrity test for the new algorithm.

X Liu↗

Aerosol Indirect Effects on Water Vapor in the UTLS of Typhoon Saomai (2006)

The evolution of landfalling Typhoon Saomai (2006) is simulated using the Weather Research and Forecasting model with spectral bin microphysics scheme, showing tropical cyclone (TC) could vertically transport water vapor from troposphere to upper troposphere and lower stratosphere (UTLS). Three aerosol sensitivity experiments are conducted to explore the indirect effects of aerosol served as cloud condensation nuclei (CCN) on overshooting convection (OTC) and water vapor content in UTLS, namely MAR (maritime), MIX (semi‐continental) and CON (continental). Results revealed that CON simulation with high initial aerosol concentration showing invigorated convection at the periphery of the TC, which interfered with the reformation of TC eyewall, leading to TC weakening finally. In addition, CON simulated the least water content in UTLS through suppressing the number of convection overshooting the tropopause level. Most overshooting events take place during TC developing stage in the eyewall region before landfall. Higher levels of CCN concentration could lead to decreased number of OTC in TC, consistently reduced the water vapor content in UTLS. CON and MIX experiments simulated respectively 21.9% (16.2%) and 9.96% (1.5%) less OTC (water vapor content in UTLS) than MAR simulation. Further, water vapor content in UTLS is affected by the interaction of OTC and ice‐phase microphysics. The interesting point is that the CCN sensitivity experiments show that water vapor content in UTLS of a TC is sensitive to the CCN concentration in the boundary layer.

54 ENVIRONMENTAL SCIENCES↗

Convective and Turbulent Motions in Nonprecipitating Cu. Part III: Characteristics of Turbulence Motions

Velocity field in a nonprecipitating Cu under BOMEX conditions, simulated by SAM with 10-m resolution and spectral bin microphysics is separated into the convective part and the turbulent part, using a wavelet filtering. In Part II of the study properties of convective motions of this Cu were investigated. Here in Part III of the study, the parameters of cloud turbulence are calculated in the cloud updraft zone at different stages of cloud development. The main points of this study are (i) application of a fine-scale LES model of a single convective cloud allowed a direct estimation of turbulence parameters using the resolved flow in the cloud and (ii) the separation of the resolved flow into the turbulence flow and the nonturbulence flow allowed us to estimate different turbulent parameters with sufficient statistical accuracy. We calculated height and time dependences of the main turbulent parameters such as turbulence kinetic energy (TKE), spectra of TKE, dissipation rate, and the turbulent coefficient. It was found that the main source of turbulence in the cloud is buoyancy whose contribution is described by the buoyancy production term (BPT). The shear production term (SPT) increases with height and reaches its maximum near cloud top, and so does BPT. In agreement with the behavior of BPT and SPT, turbulence in the lower cloud part (below the inversion level) is weak and hardly affects the processes of mixing and entrainment. The fact that BPT is larger than SPT determines many properties of cloud turbulence. For instance, the turbulence is nonisotropic, so the vertical component of TKE is substantially larger than the horizontal components. Another consequence of the fact that BPT is larger than STP manifests itself in the finding that the turbulence spectrum largely obeys the -11/5 Bolgiano–Obukhov scaling. The classical Kolmogorov -5/3 scaling dominates for the low part of a cloud largely at the dissolving stage of cloud evolution. Using the spectra obtained we evaluated an “effective” dissipation rate which increases with height from nearly zero at cloud base up to 20 cm 2 s -3 near cloud top. The coefficient of turbulent diffusion was found to increase with height and ranged from 5 m 2 s -1 near cloud base to 25 m 2 s -1 near cloud top. In conclusion, the possible role of turbulence in the process of lateral entrainment and mixing is discussed.

54 ENVIRONMENTAL SCIENCES↗

Advanced Simulation of ITER Core X-ray Crystal Spectroscopy

X-Ray Simulation Analysis (XRSA) is an analytical ray-tracing mixed code developed specifically for the ITER Core X-Ray Crystal Spectroscopy (XRCS-Core) diagnostic, which employs a dual-reflection configuration incorporating multiple pre-reflectors made of Highly Oriented Pyrolytic Graphite (HOPG) and spherically curved analyzing crystals. The ITER XRCS-Core is designed for high spectral resolution measurement in specific wavelength ranges, including narrow bands around 1.354 Å for W 64+ , 2.19 Å for Xe 51+ , and 2.555 Å for Xe 44+ and Xe 47+ , enabling diagnostic capability across a broad electron temperature range in the ITER plasma. XRSA facilitates efficient simulation of the spectral performance of this complex X-ray spectroscopic system. Recent updates to the XRSA code have incorporated two critical effects: auto-focusing, which specifically applies to HOPG, and polarization. These two effects are particularly important in the dual-reflection configuration used in the ITER XRCS-Core system to provide more accurate modeling results. Here, simulations conducted with the updated code demonstrate that polarization has a substantial impact on the performance of the dual-reflection system. Additionally, the combined influence of polarization and system layout introduces performance variations across channels through the same crystal.

Computer graphics↗

Numerical experiments in boundary-layer stability

Numerical solution of the three-dimensional incompressible Navier-Stokes equations is used to study the instability of a flat-plate boundary layer in a manner analogous to the vibrating-ribbon experiments. Flow-field structures are observed which are very similar to those found in the vibrating-ribbon experiment to which computational initial conditions have been matched. Streamwise periodicity is assumed in the simulation so that the evolution occurs in time, but the events which constitute the instability are so similar to the spatially occurring ones of the laboratory that it seems clear the physical processes involved are the same. A spectral and finite difference numerical algorithm is employed in the simulation.

Wray, A.↗

Decoding the Atomic Structure of Ga 2 Te 5 Pulsed Laser Deposition Films for Memory Applications Using Diffraction and First-Principles Simulations

Neuromorphic computing, reconfigurable optical metamaterials that are operational over a wide spectral range, holographic and nonvolatile displays of extremely high resolution, integrated smart photonics, and many other applications need next-generation phase-change materials (PCMs) with better energy efficiency and wider temperature and spectral ranges to increase reliability compared to current flagship PCMs, such as Ge 2 Sb 2 Te 5 or doped Sb 2 Te. Gallium tellurides are favorable compounds to achieve the necessary requirements because of their higher melting and crystallization temperatures, combined with low switching power and fast switching rate. Ga 2 Te 3 and non-stoichiometric alloys appear to be atypical PCMs; they are characterized by regular tetrahedral structures and the absence of metavalent bonding. The sp 3 gallium hybridization in cubic and amorphous Ga 2 Te 3 is also different from conventional p-bonding in flagship PCMs, raising questions about its phase-change mechanism. Furthermore, gallium tellurides exhibit a number of unexpected and highly unusual phenomena, such as nanotectonic compression and viscosity anomalies just above their melting points. Using high-energy X-ray diffraction, supported by first-principles simulations, we will elucidate the atomic structure of amorphous Ga 2 Te 5 PLD films, compare it with the crystal structure of tetragonal gallium pentatelluride, and investigate the electrical, optical, and thermal properties of these two materials to assess their potential for memory applications, among others.

36 MATERIALS SCIENCE↗