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At least 1,081 records · Page 60

Establishing connectivity patterns of eastern oysters ( Crassostrea virginica ) on regional oceanographic scales

Localized depletion of marine and estuarine populations often results from large-scale natural and anthropogenic disturbances (e.g., hurricanes, oil spills) as well as overharvest of fisheries resources. Understanding how such localized depletions may affect populations at larger regional scales requires knowledge of connectivity among local populations within the larger regional landscape or metapopulation. Efforts to restore populations following such decreases require similar knowledge. During the 2010 Deepwater Horizon oil spill, dramatic declines of oysters occurred throughout estuaries west and east of the Mississippi River. We examined trajectories of particles, which were parameterized to mimic oyster larvae, using the ADvanced CIRCulation (ADCIRC; https://adcirc.org ) model to evaluate potential connectivity within and among embayments from Western Louisiana to Alabama. Patterns of larval settlement, which we defined as the intersection of a larval particle with known or expected oyster habitat at any point 13–21 days post-release, reflected much greater local contributions, with 50%–90% of settled particles originating within the same subdivision of embayments. Exchange among subdivision was much less (0%–40%) and settlement originating from outside the embayment of release was trivial under most scenarios (0%–14%). Connectivity between adjacent basins was greatest for larvae released in the southern portions of the embayment, whereas connectivity among nonadjacent basins was not predicted under the scenarios modeled. Because most local populations are relatively isolated on ecological timescales, areas suffering from extensive local depletion are likely to require extensive time to recover due to the lack of larval subsidy from the overall regional population. Restoration would require building stepping-stone populations or reefs within and among basin to restore a high degree of connectivity.

59 BASIC BIOLOGICAL SCIENCES↗

Manufacturing Water‐Based Low‐Tortuosity Electrodes for Fast‐Charge through Pattern Integrated Stamping

Achieving high energy density and fast charging of lithium‐ion batteries can accelerate the promotion of electric vehicles. However, the increased mass loading causes poor charge transfer, impedes the electrochemical reaction kinetics, and limits the battery charging rate. Herein, this work demonstrated a novel pattern integrated stamping process for creating channels in the electrode, which benefits ion transport and increases the rate performance of the electrode. Meanwhile, the pressure applied during the stamping process improved the contact between electrode and current collector and also enhanced the mechanical stability of the electrode. Compared to the conventional bar‐coated electrode with the same thickness of 155 μm (delivered a discharge capacity of 16 mAh g −1 at the rate of 3 C), the stamped low‐tortuosity LiFePO 4 electrode delivered 101 mAh g −1 capacity. Additionally, water was employed as a solvent in this study. Owing to its eco‐friendliness, high scalability, and minimal waste generation, this novel stamping technique inspire a new method for the industrial‐level efficient roll to roll fabrication of fast‐charge electrodes.

25 ENERGY STORAGE↗

Regional patterns of postwildfire streamflow response in the Western United States: The importance of scale‐specific connectivity

Abstract Wildfires can impact streamflow by modifying net precipitation, infiltration, evapotranspiration, snowmelt, and hillslope run‐off pathways. Regional differences in fire trends and postwildfire streamflow responses across the conterminous United States have spurred concerns about the impact on streamflow in forests that serve as water resource areas. This is notably the case for the Western United States, where fire activity and burn severity have increased in conjunction with climate change and increased forest density due to human fire suppression. In this review, we discuss the effects of wildfire on hydrological processes with a special focus on regional differences in postwildfire streamflow responses in forests. Postwildfire peak flows and annual water yields are generally higher in regions with a Mediterranean or semi‐arid climate (Southern California and the Southwest) compared to the highlands (Rocky Mountains and the Pacific Northwest), where fire‐induced changes in hydraulic connectivity along the hillslope results in the delivery of more water, more rapidly to streams. No clear streamflow response patterns have been identified in the humid subtropical Southeastern United States, where most fires are prescribed fires with a low burn severity, and more research is needed in that region. Improved assessment of postwildfire streamflow relies on quantitative spatial knowledge of landscape variables such as prestorm soil moisture, burn severity and correlations with soil surface sealing, water repellency, and ash deposition. The latest studies furthermore emphasize that understanding the effects of hydrological processes on postwildfire dynamic hydraulic connectivity, notably at the hillslope and watershed scales, and the relationship between overlapping disturbances including those other than wildfire is necessary for the development of risk assessment tools.

Hallema, Dennis W.↗

Convergent behavior of extended stalk regions from staphylococcal surface proteins with widely divergent sequence patterns

Staphylococcus epidermidis and Staphylococcus aureus are highly problematic bacteria in hospital settings. A major challenge is their ability to form biofilms on abiotic or biotic surfaces. Biofilms are well-organized, multicellular bacterial aggregates that resist antibiotic treatment and often lead to recurrent infections. Bacterial cell wall-anchored (CWA) proteins are important players in biofilm formation and infection. Many have putative stalk-like regions or regions of low complexity near the cell wall-anchoring motif. Recent work demonstrated the strong propensity of the stalk region of S. epidermidis accumulation-associated protein (Aap) to remain highly extended under solution conditions that typically induce compaction. This behavior is consistent with the expected function of a stalk-like region that is covalently attached to the cell wall peptidoglycan and projects the adhesive domains of Aap away from the cell surface. In this study, we evaluate whether the ability to resist compaction is a common theme among stalk regions from various staphylococcal CWA proteins. Circular dichroism spectroscopy was used to examine secondary structure changes as a function of temperature and cosolvents along with sedimentation velocity analytical ultracentrifugation, size-exclusion chromatography, and SAXS to characterize structural characteristics in solution. All stalk regions tested are intrinsically disordered, lacking secondary structure beyond random coil and polyproline type II helix, and they all sample highly extended conformations. Remarkably, the Ser-Asp dipeptide repeat region of SdrC exhibited nearly identical behavior in solution when compared to the Aap Pro/Gly-rich region, despite highly divergent sequence patterns, indicating conservation of function by various distinct staphylococcal CWA protein stalk regions.

59 BASIC BIOLOGICAL SCIENCES↗

Spatial patterns in occupancy and density of larval lampreys in freshwater habitats restored to a Stage 0 condition

Abstract We examined occupancy and density of larval lampreys ( Entosphenus tridentatus and Lampetra spp.) in two rivers in Oregon (USA) restored to a Stage 0 condition 1–5 years prior, using a multiscale occupancy model and a zero‐inflated Poisson mixture model. We sampled lampreys using backpack electrofishing in randomly distributed, paired, 1‐m 2 quadrats and recorded environmental data. Probabilities of occupancy and density were higher when water velocity was low, the substrate was noncompacted, and sediment was dominated by fines (<4 mm). At mean water depth (0.34 m) and velocity (0.09 m/s), estimated densities in occupied quadrats were 4.8 lampreys/m 2 (95%: 3.4–6.9) when the substrate was compacted, and fines were not dominant, and 21.1 lampreys/m 2 (95%: 17.7–25.3) when the substrate was noncompacted and fines were dominant. Probabilities of detecting occupancy in a 1‐m 2 quadrat sampled by backpack electrofishing were 0.76 (95%: 0.64–0.87) when captured after visual observation and 0.80 (95%: 0.71–0.88) with blind sweeps (i.e., constantly moving the net regardless of observation). The probability of capturing a single lamprey in a quadrat sampled by blind sweeps was 0.32 (95%: 0.27–0.37). Sampling in paired 1‐m 2 quadrats facilitated concurrent examination of patterns in occupancy and density while accounting for capture probability, which could aid temporal monitoring of restored habitats. To the best of our knowledge, this is the first study to document occupancy and estimate densities of larval lampreys in habitats that underwent valley floor restoration to Stage 0. We observed both lamprey genera within 5 years of restoration. Aquatic restoration that increases low‐velocity, noncompacted, fine sediment habitats could benefit lampreys.

Harris, Julianne E.↗

Designing Low Tortuosity Electrodes through Pattern Optimization for Fast-Charging

The development of fast-charging technologies is crucial for expediting the progress and promotion of electric vehicles. In addition to innovative material exploration, reduction in the tortuosity of electrodes is a favored strategy to enhance the fast-charging capability of lithium-ion batteries by optimizing the ion-transfer kinetics. To realize the industrialization of low-tortuosity electrodes, a facile, cost-effective, highly controlled, and high-output continuous additive manufacturing roll-to-roll screen printing technology is proposed to render customized vertical channels within electrodes. Extremely precise vertical channels are fabricated by applying the as-developed inks, using LiNi 0.6 Mn 0.2 Co 0.2 O 2 as the cathode material. Additionally, the relationship between the electrochemical properties and architecture of the channels, including the pattern, channel diameter, and edge distance between channels, is revealed. The optimized screen-printed electrode exhibited a seven-fold higher charge capacity (72 mAh g -1 ) at a current rate of 6 C and superior stability compared with that of the conventional bar-coated electrode (10 mAh g -1 , 6 C) at a mass loading of 10 mg cm -2 . Finally, this roll-to-roll additive manufacturing can potentially be applied to various active materials printing to reduce electrode tortuosity and enable fast charging in battery manufacturing.

42 ENGINEERING↗

Atmospheric circulation patterns associated with extreme cold winters in the UK

Extremely cold winters have been reported in the UK since records began, yet the exceptional temperatures during the winters of 2009/2010 and 2010/2011 greatly increased interest in this topic. With a mean temperature of –0.7 °C, December 2010 was the second coldest December in the Central England Temperature record (CET; Parker et al., 1992) which dates to 1659, rivalling only December 1890 (–0.8 °C). Previous research into the causes of such cold events has found associations with the North Atlantic Oscillation (NAO), Arctic Oscillation (AO), the East Atlantic Pattern (EA), the El Niño-Southern Oscillation (ENSO), blocking events and solar activity, as discussed below. Many of these studies have been limited to the past 60–70 years due to a lack of four-dimensional reconstructions of atmospheric conditions (i.e. reanalysis data). Our research uses the recently available Twentieth Century Reanalysis (Compo et al., 2011) to provide the first reliable estimates of the state of the atmosphere during some of the coldest winters of the past 140 years, most of which have fallen outside the scope of past studies.

54 ENVIRONMENTAL SCIENCES↗

Substrate, temperature, and geographical patterns among nearly 2000 natural yeast isolates

Yeasts have broad importance as industrially and clinically relevant microbes and as powerful models for fundamental research, but we are only beginning to understand the roles yeasts play in natural ecosystems. Yeast ecology is often more difficult to study compared to other, more abundant microbes, but growing collections of natural yeast isolates are beginning to shed light on fundamental ecological questions. In this work, we used environmental sampling and isolation to assemble a dataset of 1962 isolates collected from throughout the contiguous United States of America (USA) and Alaska, which were then used to uncover geographic patterns, along with substrate and temperature associations among yeast taxa. We found some taxa, including the common yeasts Torulaspora delbrueckii and Saccharomyces paradoxus, to be repeatedly isolated from multiple sampled regions of the USA, and we classify these as broadly distributed cosmopolitan yeasts. A number of yeast taxon-substrate associations were identified, some of which were novel and some of which support previously reported associations. Further, we found a strong effect of isolation temperature on the phyla of yeasts recovered, as well as for many species. We speculate that substrate and isolation temperature associations reflect the ecological diversity of and niche partitioning by yeast taxa.

59 BASIC BIOLOGICAL SCIENCES↗

Finding Hidden Patterns in High Resolution Wind Flow Model Simulations

Wind flow data is critical in terms of investment decisions and policy making. High resolution data from wind flow model simulations serve as a supplement to the limited resource of original wind flow data collection. Given the large size of data, finding hidden patterns in wind flow model simulations are critical for reducing the dimensionality of the analysis. In this work, we first perform dimension reduction with two autoencoder models: the CNN-based autoencoder (CNN-AE) [1], and hierarchical autoencoder (HIER-AE) [2], and compare their performance with the Principal Component Analysis (PCA). We then investigate the super-resolution of the wind flow data. By training a Generative Adversarial Network (GAN) with 300 epochs, we obtained a trained model with 2× resolution enhancement. We compare the results of GAN with Convolutional Neural Network (CNN), and GAN results show finer structure as expected in the data field images. Also, the kinetic energy spectra comparisons show that GAN outperforms CNN in terms of reproducing the physical properties for high wavenumbers and is critical for analysis where high-wavenumber kinetics play an important role.

97 MATHEMATICS AND COMPUTING↗

Imaging post-stereotactic body radiation therapy responses for hepatocellular carcinoma: typical imaging patterns and pitfalls

Stereotactic body radiation therapy (SBRT) has increased utility in the management of hepatocellular carcinoma (HCC) ranging from local therapy in early-stage HCC not suitable for other focal therapies to end-stage HCC. As the indications for the use of SBRT in HCC expand, diagnostic imaging is being increasingly used to assess response to treatment. The imaging features of tumor response do not parallel those of other focal therapies such as radiofrequency ablation or trans-arterial chemoembolization that immediately devascularize the tumor. The tumor response to SBRT on imaging takes much longer and often shows gradual changes including the reduction of enhancement and size over several months. It is essential to recognize the typical imaging patterns of response, as well as the appearance of focal liver reaction in the non-target liver that can confound image interpretation. The timing of treatment response assessment imaging is fundamental to minimize the potential for false negative response. The purpose of this article is to review the variable post-SBRT imaging features of HCC and adjacent liver parenchyma and discuss the potential pitfalls of imaging evaluation after SBRT for HCC.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Pattern of Retained Contrast on Immediate Postprocedure Computed tomography (CT) After Particle Embolization of Liver Tumors Predicts Subsequent Treatment Response

PurposeTo determine if the pattern of retained contrast on immediate postprocedure computed tomography (CT) after particle embolization of hepatic tumors predicts modified Response Evaluation Criteria in Solid Tumors (mRECIST) response.Materials and MethodsThis study was approved by the Institutional Review Board with a waiver of authorization. One hundred four liver tumors were embolized with spherical embolic agents (Embospheres, Bead Block, LC Bead) and polyvinyl alcohol. Noncontrast CT was performed immediately after embolization to assess contrast retention in the targeted tumors, and treatment response was assessed by mRECIST criteria on follow-up CT (average time 9.0 {+-} 7.7 weeks after embolization). Tumor contrast retention (TCR) was determined based on change in Hounsfield units (HUs) of the index tumors between the preprocedure and immediate postprocedure scans; vascular contrast retention (VCR) was rated; and defects in contrast retention (DCR) were also documented. The morphology of residual enhancing tumor on follow-up CT was described as partial, circumferential, or total. Association between TCR variables and tumor response were assessed using multivariate logistic regression.ResultsOf 104 hepatic tumors, 51 (49 %) tumors had complete response (CR) by mRECIST criteria; 23 (22.1 %) had partial response (PR); 21 (20.2 %) had stable disease (SD); and 9 (8.7 %) had progressive disease (PD). By multivariate analysis, TCR, VCR, and tumor size are independent predictors of CR (p = 0.02, 0.05, and 0.005 respectively). In 75 tumors, DCR was found to be an independent predictor of failure to achieve complete response (p < 0.0001) by imaging criteria.ConclusionTCR, VCR, and DCR on immediate posttreatment CT are independent predictors of CR by mRECIST criteria.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Reconstruction of the springtime East Asian Subtropical Jet and Western Pacific pattern from a millennial-length Taiwanese tree-ring chronology

The East Asian subtropical jet (EAJ) and the closely related Western Pacific pattern (WP) are among the most important features in global atmospheric dynamics, but little is known about their long-term variability. This study presents reconstructions of the Spring EAJ index (EAJI) and the Spring WP index (WPI) based on significant relationships identified between mean values for these features and a millennial length tree-ring width chronology of Chamaecyparis obtusa var. formosana, a high-mountain cloud forest species from northeastern Taiwan. Tree-ring based reconstructions of high pass filtered versions of the EAJI and WPI (EAJI 5YR and WPI 5YR) presented herein explain 42 and 31 % of the WPI 5YR and EAJI 5YR, respectively, and display acceptable reliability back to A.D. 1237. A significant trend present in the long-term variance of the reconstructed EAJI and WPI after A.D. 1860 suggests long-term increasing variability in the spring mean latitudinal placement and/or the strength/breadth of the EAJ core region near Taiwan and Japan and in the trajectory of the EAJ over the North Pacific. Related features affected by changes in the EAJ include the North Pacific storm track and Asian Dust transport.

Meteorology & Atmospheric Sciences↗

Spatial–temporal changes in potential evaporation patterns based on the Cloud model and their possible causes

It is of importance to comprehensively investigate the spatial-temporal changes in potential evaporation patterns, which helps guide the long-term water resource allocation and irrigation managements. In this study, the Cloud model was adopted to quantify the average, uniformity, and stability of annual potential evaporation in the Wei River Basin (WRB), a typical arid and semi-arid region in China.. The cross wavelet analysis was then applied to explore the correlations between potential evaporation and Arctic Oscillation (AO)/El Niño Southern Oscillation (ENSO) with an aim to determine the possible causes of potential evaporation variations. Results indicated that: (1) the average of annual potential evaporation in the WRB first declined and then increased, which was similar with its stability, whilst its dispersion degree exhibited a decreasing trend, implying that potential evaporation has a small inter-annual variation; (2) the average of potential evaporation in the western basin was obviously smaller than that in the other areas, while its uniformity and stability in the Guanzhong plain and the Loess Plateau areas are larger than those in other areas, particularly in the western basin where the uniformity and stability are the smallest; (3) both AO and ENSO exhibited strong correlations with potential evaporation variations, indicating that both AO and ENSO have played an important role in the annual potential evaporation variations in the WRB.

54 ENVIRONMENTAL SCIENCES↗

Examination of climatological wind patterns and simulated pollen dispersion in a complex island environment

Complex terrain creates small-scale circulations which affect pollen dispersion but may be missed by meteorological observing networks and coarse-grid meteorological models. On volcanic islands, these circulations result from differing rates of surface heating between land and sea as well as rugged terrain. We simulated the transport of bentgrass, ryegrass, and maize pollen from 30 sources within the agricultural regions of the Hawaiian island Kaua’i during climatological conditions spanning season conditions and the La Niña, El Niño, and neutral phases of the El Niño-Southern Oscillation. Both pollen size and source location had major effects on predicted dispersion over and near the island. Three patterns of pollen dispersion were identified in response to prevailing wind conditions: southwest winds transported pollen inland, funneling pollen grains through valleys; east winds transported pollen over the ocean, with dispersive tails for the smallest pollen grains following the mean wind and extending as far as the island of Ni’ihau 35 km away; and northeast winds moved pollen inland counter to the prevailing flow due to a sea breeze circulation that formed over the source region. These results are the first to predict the interactions between complex island terrain and local climatology on grass pollen dispersion. As a result, they demonstrate how numerical modeling can provide guidance for field trials by illustrating the common flow regimes present in complex terrain, allowing field trials to focus on areas where successful sampling is more likely to occur.

54 ENVIRONMENTAL SCIENCES↗

Semi-automatic Methods for Airway and Adjacent Vessel Measurement in Bronchiectasis Patterns in Lung HRCT Images of Cystic Fibrosis Patients

Airway and vessel characterization of bronchiectasis patterns in lung high-resolution computed tomography (HRCT) images of cystic fibrosis (CF) patients is very important to compute the score of disease severity. We propose a hybrid and evolutionary optimized threshold and model-based method for characterization of airway and vessel in lung HRCT images of CF patients. First, the initial model of airway and vessel is obtained using the enhanced threshold-based method. Then, the model is fitted to the actual image by optimizing its parameters using particle swarm optimization (PSO) evolutionary algorithm. The experimental results demonstrated the outperformance of the proposed method over its counterpart in R-squared, mean and variance of error, and run time. Moreover, the proposed method outperformed its counterpart for airway inner diameter/vessel diameter (AID/VD) and airway wall thickness/vessel diameter (AWT/VD) biomarkers in R-squared and slope of regression analysis.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Algorithmic Patterns for $$\mathcal {H}$$-Matrices on Many-Core Processors

In this work, we consider the reformulation of hierarchical ( \(\mathcal {H}\) ) matrix algorithms for many-core processors with a model implementation on graphics processing units (GPUs). \(\mathcal {H}\) matrices approximate specific dense matrices, e.g., from discretized integral equations or kernel ridge regression, leading to log-linear time complexity in dense matrix–vector products. The parallelization of \(\mathcal {H}\) matrix operations on many-core processors is difficult due to the complex nature of the underlying algorithms. While previous algorithmic advances for many-core hardware focused on accelerating existing \(\mathcal {H}\) matrix CPU implementations by many-core processors, we here aim at totally relying on that processor type. As main contribution, we introduce the necessary parallel algorithmic patterns allowing to map the full \(\mathcal {H}\) matrix construction and the fast matrix–vector product to many-core hardware. In this work, crucial ingredients are space filling curves, parallel tree traversal and batching of linear algebra operations. The resulting model GPU implementation hmglib is the, to the best of the authors knowledge, first entirely GPU-based Open Source \(\mathcal {H}\) matrix library of this kind. We investigate application examples as present in kernel ridge regression, Gaussian Process Regression and kernel-based interpolation. In this context, an in-depth performance analysis and a comparative performance study against a standard multi-core CPU \(\mathcal {H}\) matrix library highlights profound speedups of our many-core parallel approach.

97 MATHEMATICS AND COMPUTING↗

Transverse Tunable Magneto-Plasmonic Kerr Effect in Large Area Micro-Patterned Au/Co/Au Structures

By sputtering the sequence of Au/Co/Au layers on ordered microspheres, two-dimensional plasmonic arrays with sufficient angular tunability and enhanced transverse magneto-plasmonic Kerr effect are fabricated. For confirmation of enhanced optical properties, we simulated the fabricated sample using the finite difference time domain method. In order to investigate the effect of rotation speed on the anisotropy of the samples and their magneto-plasmonic responses, these patterned structures are fabricated under dissimilar holder rotation speeds for inner cobalt layer deposition (i.e., Au (10 rpm)/Co (30 rpm)/Au (10 rpm) and Au (10 rpm)/Co (10 rpm)/Au (10 rpm) structures). Our results show that the transverse magneto-plasmonic Kerr effect measurements can provide unique and useful information about the structure and quality of the fabricated samples. In addition, the ability of the samples as a tunable magnetic field sensor has been investigated.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Investigation of the Branching of Solutions of the Problems of Synthesis of Radiating Systems with Flat Aperture According to a Given Amplitude Directivity Pattern

We continue our investigation of the nonuniqueness of solutions in the problems of synthesis of radiating systems with flat apertures depending on two parameters characterizing the size of the aperture and the solid angle in which the required amplitude directivity pattern is defined. The existence and properties of the real (primary) solutions of four types are clarified. We study the problems of branching of primary solutions of the second type. In the first approximation, we determine the analytic representations of complex-valued solutions branched from a real solution and investigate their main properties. The numerical experiments are carried out to analyze the efficiency of real and branched complexvalued solutions.

97 MATHEMATICS AND COMPUTING↗