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At least 1,081 records · Page 60
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Validation of 3D cryoEM single-particle reconstruction correctness and handedness with Ewald's sphere correction

The correct description of quantum scattering places the observed scattering contributions on the Ewald's sphere and its Friedel mate copy. In electron microscopy, due to the large radius of the Ewald's sphere, these scattering contributions are typically merged during data analysis. We present an approach that separates and factorizes those contributions into real and imaginary components of the image. When an inverted solution is calculated, the map derived from the real component of the image generates an inverted solution, while the map derived from the imaginary component of the image generates an inverted and sign-flipped solution. Therefore, the sign of correlation between reconstructions derived from the real and imaginary components provides the automatic determination of handedness and additional validation for the quality of 3D reconstructions. The factorization and its implementation are robust enough to be routinely used in single-particle reconstructions, even at resolutions below the limit where the curvature of the Ewald's sphere affects the overall signal-to-noise ratio.

Chemistry↗
DOE OSTI2020

Depth-First Search Image Chasing

This presentation contains results from work on an active NNSS Site-directed research and development (SDRD) project: NLV-019-20. It describes a new algorithm for "few-angle tomography", which can be used to reconstruct an approximation to an object from limited quantities or radiographs under specific conditions. This presentation is an initial documentation of research results thus-far, and we would like to share these methods with colleagues at Lawrence Livermore National Lab who have an expertise in the area of few-angle tomography. Sharing this presentation will be done via email and or teleconference amongst DoE personnel. In the future, we would also like to share these results with collaborators from Academia as well.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

Kinetic equilibrium reconstruction and the impact on stability analysis of KSTAR plasmas

High fidelity kinetic plasma equilibrium reconstructions are an essential requirement for accurate stability and disruption prediction analyses to support continuous operation of high beta tokamak plasmas. The present kinetic equilibrium reconstructions of plasmas in the KSTAR device include plasma density and temperature profiles from Thomson scattering and ion temperature from charge exchange spectroscopy diagnostics, and allowance for fast particle pressure. In addition, up to 25 channels of motional Stark effect diagnostic data are used to constrain the magnetic field pitch angle profile in the plasma to produce a reliable computation of the safety factor, q, profile. In this work, H-mode plasmas exhibit clear pedestal characteristics in the reconstructed pressure profile compared to internal transport barrier or L-mode plasmas. The plasma configuration and vertical position of inner strike points are validated by CCD and infrared camera images. Ideal and resistive magnetohydrodynamic (MHD) stability analyses using the DCON and resistive DCON codes utilize these kinetic equilibrium reconstructions to compare to experimental plasma stability. Equilibria with sufficiently low convergence error can provide reliable computation of ideal and resistive MHD stability analysis.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2024

Missing Wedge Completion via Unsupervised Learning with Coordinate Networks

Cryogenic electron tomography (cryoET) is a powerful tool in structural biology, enabling detailed 3D imaging of biological specimens at a resolution of nanometers. Despite its potential, cryoET faces challenges such as the missing wedge problem, which limits reconstruction quality due to incomplete data collection angles. Recently, supervised deep learning methods leveraging convolutional neural networks (CNNs) have considerably addressed this issue; however, their pretraining requirements render them susceptible to inaccuracies and artifacts, particularly when representative training data is scarce. To overcome these limitations, we introduce a proof-of-concept unsupervised learning approach using coordinate networks (CNs) that optimizes network weights directly against input projections. This eliminates the need for pretraining, reducing reconstruction runtime by 3–20× compared to supervised methods. Our in silico results show improved shape completion and reduction of missing wedge artifacts, assessed through several voxel-based image quality metrics in real space and a novel directional Fourier Shell Correlation (FSC) metric. Our study illuminates benefits and considerations of both supervised and unsupervised approaches, guiding the development of improved reconstruction strategies.

42 ENGINEERING↗
DOE OSTI2026

Single-shot imaging with randomized structured illumination at a free electron laser

Stroboscopic nanoscale imaging with free electron laser light is revolutionizing our understanding of fast dynamics in heterogeneous systems. The short wavelength of X-ray and extreme ultraviolet radiation makes it possible to achieve nanoscale resolution, while resonance with atomic transitions gives access to electronic and magnetic degrees of freedom. Here, we report on our implementation of a recently developed imaging method, randomized probe imaging, at a free electron laser. The advantage of randomized probe imaging over existing methods is its compatibility with extended and strongly scattering samples. Our implementation delivers robust single-shot reconstructions at up to a full-pitch resolution of 400 nm over a field of view with a 40 µm diameter. We also demonstrate single-shot imaging of magnetic domain structures using circular dichroism at resonance, paving the way to future time-resolved studies of magnetic dynamics, shock physics, and the dynamics of collective electronic phases.

47 OTHER INSTRUMENTATION↗
DOE OSTI2024

3D imaging of magnetic domains in Nd 2 Fe 14 B using scanning hard X-ray nanotomography

Nanoscale structural and electronic heterogeneities are prevalent in condensed matter physics. Investigating these heterogeneities in 3D has become an important task for understanding material properties. To provide a tool to unravel the connection between nanoscale heterogeneity and macroscopic emergent properties in magnetic materials, scanning transmission X-ray microscopy (STXM) is combined with X-ray magnetic circular dichroism. A vector tomography algorithm has been developed to reconstruct the full 3D magnetic vector field without any prior noise assumptions or knowledge about the sample. Two tomographic scans around the vertical axis are acquired on single-crystalline Nd 2 Fe 14 B pillars tilted at two different angles, with 2D STXM projections recorded using a focused 120 nm X-ray beam with left and right circular polarization. Image alignment and iterative registration have been implemented based on the 2D STXM projections for the two tilts. Dichroic projections obtained from difference images are used for the tomographic reconstruction to obtain the 3D magnetization distribution at the nanoscale.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2026

Imaging supermoiré relaxation in helical trilayer graphene

In twisted van der Waals materials, local atomic relaxation can alter the underlying electronic structure. Characterizing lattice reconstruction and its susceptibility to strain is essential for understanding emergent electronic states, especially in multilayers in which interference between moiré lattices yields larger supermoiré patterns whose energy is highly sensitive to local stacking. Here, in this study, we image spatial modulations in the electronic character of helical trilayer graphene, which indicate relaxation into a superstructure of large domains with uniform moiré periodicity. We show that the supermoiré domain size is increased by strain and can be altered in the same device while preserving the local properties within each domain. Finally, we observe a higher conductance at the domain boundaries, consistent with predictions that they host counterpropagating edge modes. Our work provides a real-space visualization of moiré-periodic domains, reveals two independently tunable length scales and demonstrates strain engineering as a route towards designing correlated topological networks at the supermoiré scale.

36 MATERIALS SCIENCE↗
DOE OSTI2022

Intracardiac Electrical Imaging using the 12-lead ECG: A Machine Learning Approach using Synthetic Data

Current state-of-the-art techniques for non-invasive imaging of cardiac electrical phenomena require voltage recordings from dozens of different torso locations and anatomical models built from expensive medical diagnostic imaging procedures. Here this study aimed to assess if recent machine learning advances could alternatively reconstruct electroanatomical maps at clinically relevant resolutions using only the standard 12-lead electrocardiogram (ECG) as input. To that end, a computational study was conducted to generate a dataset of over 16000 detailed cardiac simulations, which was then used to train neural network (NN) architectures designed to exploit both spatial and temporal correlations in the ECG signal. Analysis over a validation set showed average errors in activation map reconstruction below 1.7 msec over 75 intracardiac locations. Furthermore, phenotypical patterns of activation and the morphology of the activation potential were correctly reconstructed. The approach offers opportunities to stratify patients non-invasively, both retrospectively and prospectively, using metrics otherwise only available through invasive clinical procedures.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1995

Reconstruction of an infrared band of meteorological satellite imagery with abductive networks

As the current fleet of meteorological satellites age, the accuracy of the imagery sensed on a spectral channel of the image scanning system is continually and progressively degraded by noise. In time, that data may even become unusable. We describe a novel approach to the reconstruction of the noisy satellite imagery according to empirical functional relationships that tie the spectral channels together. Abductive networks are applied to automatically learn the empirical functional relationships between the data sensed on the other spectral channels to calculate the data that should have been sensed on the corrupted channel. Using imagery unaffected by noise, it is demonstrated that abductive networks correctly predict the noise-free observed data.

Singer, Harvey A.↗
DOE OSTI2022

Real-time streaming tomographic reconstruction with on-demand data capturing and 3D zooming to regions of interest

Complex dynamic tomographic experiments at brilliant X-ray light sources require real-time feedback on the sample changes with respect to environmental conditions, selecting representative regions of interest for high-resolution scanning, and on-demand data saving mechanisms for storing only relevant projections acquired by fast area detectors and reducing data volumes. Here the implementation details of a 3D real-time imaging monitoring instrument, with zooming to a volume of interest with easy-to-use visualization via ImageJ , a tool familiar to most beamline users, is presented. The instrument relies on optimized data flow between the detector and processing machines and is implemented on commodity computers. The instrument has been developed at beamline 2-BM of the Advanced Photon Source, where the automatic lens changing mechanism for zooming is implemented with an Optique Peter microscope. Performance tests demonstrate the ability to process more than 3 GB of projection data per second and generate real-time 3D zooming with different magnification. These new capabilities are essential for new APS Upgrade instruments such as the projection microscope under development at beamline 32-ID. The efficacy of the proposed instrument was demonstrated during an in situ tomographic experiment on ice and gas hydrate formation in porous samples.

3D zooming↗
NASA NTRS2012

Comparisons of Mineralogy of Lunar Meteorites Possibly from the Farside and The Kaguya Remote Sensing Data to Reconstruct the Earliest Anorthositic Crust of the Moon

Ohtake et al. [1] observed by the Kaguya multiband imager and spectral profiler anorthosites composed of nearly pure anorthite (PAN) at numerous locations in the farside highlands. Based on the Th map made by the GRS group of the Kaguya mission, Kobayashi et al. [2] showed that the lowest Th region in the lunar farside occurs near the equatorial region and noted that the regions well correspond to the lunar highest region and the thickest crust region recently measured by Kaguya mission [3,4]. Such remote sensing data have been interpreted in terms of mineralogical studies of lunar meteorites of the Dhofar 489 group [5,6] (e.g., Dhofar 489, 908, and 307) and Yamato (Y-) 86032 [7], all possibly from the farside highlands. Although the presence of magnesian anorthosites in the Dhofar 489 group has been reported, we have not encountered large clast clearly identifiable as PAN. In this study, we investigated mineralogy and textures of large clasts of nearly pure anorthosites recognized in Dhofar 911 and the d2 clast in Dhofar 489 [8]. The d2 clast is the largest white anorthosite clast in Dhofar 489, but its mineralogy has not been investigated at that time. The low bulk FeO concentrations suggests that the d2 clast may be the pure anorthosite with very low abundance of mafic silicates. In conjunction with all data of the Dhofar 489 group including Dhofar 489, 908, 309 and 307, we propose a model of formation of the farside crust.

Takeda, H.↗
DOE OSTI2020

Temporal X-ray Reconstruction using Temporal and Spectral Measurements at LCLS

Transverse deflecting structures (TDSs) are widely used in accelerator physics to measure the longitudinal density of particle bunches. When used in combination with a dispersive section, the whole longitudinal phase space density can be imaged. At the Linac Coherent Light Source (LCLS), the installation of such a device downstream of the undulators enables the reconstruction of the X-ray temporal intensity profile by comparing longitudinal phase space distributions with lasing on and lasing off. However, the resolution of this TDS is limited to around 1 fs rms (root mean square), and therefore, it is not possible to resolve single self-amplified spontaneous emission (SASE) spikes within an X-ray photon pulse. By combining the power spectrum from a high resolution photon spectrometer and the temporal structure from the TDS, the overall resolution is enhanced, thus allowing the observation of temporal, single SASE spikes. The combined data from the spectrometer and the TDS is analysed using an iterative algorithm to obtain the actual intensity profile. In this paper, we present some improvements to the reconstruction algorithm as well as real data taken at LCLS.

47 OTHER INSTRUMENTATION↗
DOE OSTI2022

Analysis of core asymmetries in inertial confinement fusion implosions using three-dimensional hot-spot reconstruction

Three-dimensional effects play a crucial role during the hot-spot formation in inertial confinement fusion (ICF) implosions. A data analysis technique for 3D hot-spot reconstruction from experimental observables has been developed to characterize the effects of low modes on 3D hot-spot formations. In nuclear measurements, the effective flow direction, governed by the maximum eigenvalue in the velocity variance of apparent ion temperatures, has been found to agree with the measured hot-spot flows for implosions dominated by mode ℓ = 1. Asymmetries in areal-density (ρR) measurements were found to be characterized by a unique cosine variation along the hot-spot flow axis. In x-ray images, a 3D hot-spot x-ray emission tomography method was developed to reconstruct the 3D hot-spot plasma emissivity using a generalized spherical-harmonic Gaussian function. The gradient-descent algorithm was used to optimize the mapping between the projections from the 3D hot-spot emission model and the measured x-ray images along multiple views. Furthermore, this work establishes a platform to analyze 3D low-mode core asymmetries in ICF.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
NASA NTRSDate not supplied

Three Dimensional Instantaneous Spray Measurements of Additively Manufactured Candidate Injector Schemes at Varying Pressure Drops

Additively manufactured (AM) injectors have the potential to improve upon the combustion performance achieved using traditionally manufactured (TM) injectors. Traditionally manufactured injector combustion performance decreases greatly in off-design conditions. Additively manufactured injectors hold the potential to sustain high combustion performance over a broader range of operating conditions than currently seen in TM injectors. Additively manufactured injectors promise to offer higher resistances to instability and achieve better overall propellant mixing and atomization for all types of combustion devices. This study expands upon previous studies that used 2-D imaging techniques to characterize the injector spray pattern of candidate AM injector elements. In this study, 3-D instantaneous measurements of the injector spray pattern are taken, allowing for deeper insight into the liquid spray breakup, an inherently 3-D phenomena. Stereo imaging is used for three dimensional analysis, which utilizes two cameras at different angles to reconstruct a three dimensional reconstruction. With this information, AM injectors can be designed to improve propellant mixing and atomization and reduce breakup length. As part of this work, a high-pressure, cold flow experimental spray facility was modified to measure each injector’s spray characteristics in terms of 𝑅𝑒 𝐿 and 𝑊𝑒 𝑔 . This facility is operated to capture instantaneous stereo photographic images, mass flow rates, and injector element thrust for pressure drop across the injector face ranging from 100 to 200 psig at a stiffness ratio of 1.0.

Murphy Mitchell↗
DOE OSTI2020

A new framework to map fine resolution cropping intensity across the globe: Algorithm, validation, and implication

We report accurate estimation of cropping intensity (CI), an indicator of food production, is well aligned with the ongoing efforts to achieve sustainable development goals (SDGs) under diminishing natural resources. The advancement in satellite remote sensing provides unprecedented opportunities for capturing CI information in a spatially continuous manner. However, challenges remain due to the lack of generalizable algorithms for accurately and efficiently mapping global CI with a fine spatial resolution. In this study, we developed a 30-m planetary-scale CI mapping framework with the reconstructed time series of Normalized Difference Vegetation Index (NDVI) from multiple satellite images. Using a binary crop phenophase profile indicating growing and non-growing periods, we estimated pixel-by-pixel CI by enumerating the total number of valid cropping cycles during the study years. Based on the Google Earth Engine cloud computing platform, we implemented the framework to estimate CI during 2016–2018 in eight geographic regions across continents that are representative of global cropping system diversity. Comparison with PhenoCam network data in four cropland sites suggests that the proposed framework is capable of capturing the seasonal dynamics of cropping practices. Spatially, overall accuracies based on validation samples range from 80.0% to 98.9% across different regions worldwide. Regarding the CI classes, single cropping systems are associated with more robust and less biased estimations than multiple cropping systems. Finally, our CI estimates reveal high agreement with two widely used land surface phenology products, including Vegetation Index and Phenology V004 (VIP4) and Moderate Resolution Imaging Spectroradiometer Land Cover Dynamics (MCD12Q2), meanwhile providing much more spatial details. Due to its robustness, the developed CI framework can be potentially generalized to produce global fine resolution CI products for food security and other applications.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Comprehensive characterization of the structure of Zr-based metallic glasses

Structure of metallic glasses fascinates as the generic amorphous structural template for ubiquitous systems. Its specification necessitates determination of the complete hierarchical structure, starting from short-range-order (SRO) → medium-range-order (MRO) → bulk structure and free volume (FV) distribution. This link has largely remained elusive since previous investigations adopted one-technique-at-a-time approach, focusing on limited aspects of any one domain. Reconstruction of structure from experimental data inversion is non-unique for many of these techniques. As a result, complete and precise structural understanding of glass has not emerged yet. In this work, we demonstrate the first experimental pathway for reconstruction of the integrated structure, for and glasses. Our strategy engages diverse (×7) multi-scale techniques [XAFS, 3D-APT, ABED/NBED, FEM, XRD, PAS, FHREM] on the same glass. This strategy complemented mutual limitations of techniques and corroborated common parameters to generate complete, self-consistent and precise parameters. Further, MRO domain size and inter-void separation were correlated to identify the presence of FV at MRO boundaries. This enabled the first experimental reconstruction of hierarchical subset: SRO → MRO → FV → bulk structure. The first ever image of intermediate region between MRO domains emerged from this link. We clarify that determination of all subsets is not our objective; the essence and novelty of this work lies in directing the pathway towards finite solution, in the most logical and unambiguous way.

36 MATERIALS SCIENCE↗
NASA NTRS1972

Extreme ultraviolet solar images televised in-flight with a rocket-borne SEC vidicon system.

A TV image of the entire sun while an importance 2N solar flare was in progress was recorded in the extreme ultraviolet (XUV) radiation band 171-630 A and was transmitted to ground from an Aerobee-150 rocket on Nov. 4, 1969 using S-band telemetry. The camera tube was a SEC vidicon, with its fiber optic faceplate coated with an XUV-to-visible conversion layer of p-quaterphenyl. The XUV passband was produced by three 1000-A thick aluminum filters in series together with the platinized reflecting surface of the off-axis paraboloid that imaged the sun. A number of images were recorded with integration times between 1/30 sec and 2 sec. Reconstruction of pictures was enhanced by combining several to reduce the noise.

Tousey, R.↗