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At least 1,081 records · Page 60

Cellular, molecular, and therapeutic characterization of pilocarpine-induced temporal lobe epilepsy

Animal models have expanded our understanding of temporal lobe epilepsy (TLE). However, translating these to cell-specific druggable hypotheses is not explored. Herein, we conducted an integrative insilico-analysis of an available transcriptomics dataset obtained from animals with pilocarpine-induced-TLE. A set of 119 genes with subtle-to-moderate impact predicted most forms of epilepsy with ~ 97% accuracy and characteristically mapped to upregulated homeostatic and downregulated synaptic pathways. The deconvolution of cellular proportions revealed opposing changes in diverse cell types. The proportion of nonneuronal cells increased whereas that of interneurons, except for those expressing vasoactive intestinal peptide (Vip), decreased, and pyramidal neurons of the cornu-ammonis (CA) subfields showed the highest variation in proportion. A probabilistic Bayesian-network demonstrated an aberrant and oscillating physiological interaction between nonneuronal cells involved in the blood–brain-barrier and Vip interneurons in driving seizures, and their role was evaluated insilico using transcriptomic changes induced by valproic-acid, which showed opposing effects in the two cell-types. Additionally, we revealed novel epileptic and antiepileptic mechanisms and predicted drugs using causal inference, outperforming the present drug repurposing approaches. These well-powered findings not only expand the understanding of TLE and seizure oscillation, but also provide predictive biomarkers of epilepsy, cellular and causal micro-circuitry changes associated with it, and a drug-discovery method focusing on these events.

60 APPLIED LIFE SCIENCES↗

Auto-generated materials database of Curie and Néel temperatures via semi-supervised relationship extraction

article presents an auto-generated database of 39,822 records containing chemical compounds and their associated Curie and Néel magnetic phase transition temperatures. The database was produced using natural language processing and semi-supervised quaternary relationship extraction, applied to a corpus of 68,078 chemistry and physics articles. Evaluation of the database shows an estimated overall precision of 73%. Therein, records processed with the text-mining toolkit, ChemDataExtractor, were assisted by a modified Snowball algorithm, whose original binary relationship extraction capabilities were extended to quaternary relationship extraction. Consequently, its machine learning component can now train with ≤500 seeds, rather than the 4,000 originally used. Data processed with the modified Snowball algorithm affords 82% precision. Database records are available in MongoDB, CSV and JSON formats which can easily be read using Python, R, Java and MatLab. As a result, this makes the database easy to query for tackling big-data materials science initiatives and provides a basis for magnetic materials discovery.

36 MATERIALS SCIENCE↗

Accelerating manufacturing for biomass conversion via integrated process and bench digitalization: a perspective

We present a perspective for accelerating biomass manufacturing via digitalization. We summarize the challenges for manufacturing and identify areas where digitalization can help. A profound potential in using lignocellulosic biomass and renewable feedstocks, in general, is to produce new molecules and products with unmatched properties that have no analog in traditional refineries. Discovering such performance-advantaged molecules and the paths and processes to make them rapidly and systematically can transform manufacturing practices. Furthermore, we discuss retrosynthetic approaches, text mining, natural language processing, and modern machine learning methods to enable digitalization. Laboratory and multiscale computation automation via active learning are crucial to complement existing literature and expedite discovery and valuable data collection without a human in the loop. Such data can help process simulation and optimization select the most promising processes and molecules according to economic, environmental, and societal metrics. We propose the close integration between bench and process scale models and data to exploit the low dimensionality of the data and transform the manufacturing for renewable feedstocks.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Template for estimating uncertainties of measured neutron-induced fission cross-sections

A template for estimating uncertainties (unc.) of measured neutron-induced fission, (n,f), cross-sections (cs) is presented. This preliminary template not only lists all expected unc. sources but also supplies ranges of unc., estimates for correlations between unc. of the same and different experiments which can be used if the information is nonexistent. If this template is applied systematically when estimating experimental covariances for an evaluation, it may help in pinpointing missing unc. for individual datasets, identifying unreasonably low unc., and estimating correlations between different experimental datasets. Thus, a detailed unc. estimate – usually, a time-intensive procedure – can be undertaken more consistently and efficiently. As an example, it is shown that unc. and correlations of 239 Pu(n,f) by Merla et al. [Proceedings of the Conference on Nuclear Data for Science and Technology 1991 Jülich (Springer-Verlag, Berlin, 1992) pp. 510–513], which are questionably low in the GMA database underlying the neutron cs standards evaluations, are distinctly larger at 14.7 MeV and more strongly correlated if this template is used for reestimating the associated covariances.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Perspective: Toward “synthesis by design”: Exploring atomic correlations during inorganic materials synthesis

Synthesis of inorganic extended solids is a critical starting point from which real-world functional materials and their consequent technologies originate. However, unlike the rich mechanistic foundation of organic synthesis, with its underlying rules of assembly (e.g., functional groups and their reactivities), the synthesis of inorganic materials lacks an underpinning of such robust organizing principles. In the latter case, any such rules must account for the diversity of chemical species and bonding motifs inherent to inorganic materials and the potential impact of mass transport on kinetics, among other considerations. Without such assembly rules, there is less understanding, less predictive power, and ultimately less control of properties. Despite such hurdles, developing a mechanistic understanding for synthesis of inorganic extended solids would dramatically impact the range of new material discoveries and resulting new functionalities, warranting a broad call to explore what is possible. Here we discuss our recent approaches toward a mechanistic framework for the synthesis of bulk inorganic extended solids, in which either embryonic atomic correlations or fully developed phases in solutions or melts can be identified and tracked during product selection and crystallization. The approach hinges on the application of high-energy x-rays, with their penetrating power and large Q-range, to explore reaction pathways in situ. We illustrate this process using two examples: directed assembly of Zr clusters in aqueous solution and total phase awareness during crystallization from K–Cu–S melts. These examples provide a glimpse of what we see as a larger vision, in which large scale simulations, data-driven science, and in situ studies of atomic correlations combine to accelerate materials discovery and synthesis, based on the assembly of well-defined, prenucleated atomic correlations.

36 MATERIALS SCIENCE↗

Rapid data-driven model reduction of nonlinear dynamical systems including chemical reaction networks using ℓ 1 -regularization

We develop a new data-driven paradigm for efficient model reduction of a broad class of nonlinear dynamical systems. Our model reduction method directly enables the interpretation of key components of the dynamical system, unlike traditional projection-based model reduction methods that focus on reducing computational complexity more than interpretability. Our method is not application specific and is simple to implement on nonlinear dynamical systems arising from a variety of different fields. It requires minimal parameterization using a single parameter to trade-off between model complexity and estimation error. We use a data-driven paradigm to formulate model reduction as an efficient convex optimization problem that scales polynomially in the original size of the complex system, enabling systems with as many as thousands of components to be reduced in a matter of minutes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Bootstrap estimation of the effect of instrument response function uncertainty on the reconstruction of fusion neutron sources

Neutron imagers are important diagnostics for the inertial confinement fusion implosions at the National Ignition Facility. They provide two- and three-dimensional reconstructions of the neutron source shape that are key indicators of the overall performance. To interpret the shape results properly, it is critical to estimate the uncertainty in those reconstructions. There are two main sources of uncertainties: limited neutron statistics, leading to random errors in the reconstructed images, and incomplete knowledge of the instrument response function (the pinhole-dependent point spread function). While the statistical errors dominate the uncertainty for lower yield deuterium-tritium (DT) shots, errors due to the instrument response function dominate the uncertainty for DT yields on the order of 10 16 neutrons or higher. In this work, a bootstrapping method estimates the uncertainty in a reconstructed image due to the incomplete knowledge of the instrument response function. The main reconstruction is created from the fixed collection of pinhole images that are best aligned with the neutron source. Additional reconstructions are then built using subsets of that collection of images. Variations in the shapes of these additional reconstructions originate solely from uncertainties in the instrument response function, allowing us to use them to provide an additional systematic uncertainty estimate.

47 OTHER INSTRUMENTATION↗

Uncertainty quantification for high explosive reactant and product equations of state

Equations of state (EOSs) are typically represented as physics-informed models with tunable parameters that are adjusted to replicate calibration data as closely as possible. Uncertainty quantification (UQ) allows for the development of an ensemble of EOS parameters that are consistent with the calibration data instead of a single EOS. In this work, we perform UQ for the reactant and product EOSs for a variety of high explosives (HEs). In doing so, we demonstrate a strategy for dealing with heterogeneous (both experimental and calculated) data. We also use a statistical distance metric to quantify the differences between the various HEs using the UQ results.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Computational optimal transport for molecular spectra: The fully continuous case

Computational optimal transport is used to analyze the difference between pairs of continuous molecular spectra. It is demonstrated that transport distances which are derived from this approach may be a more appropriate measure of the difference between two continuous spectra than more familiar measures of distance under many common circumstances. Associated with the transport distances is the transport map which provides a detailed analysis of the difference between two molecular spectra and is a key component of our study of quantitative differences between two continuous spectra. The use of optimal transport for comparing molecular spectra is developed in detail here with a set of model spectra, so that the discussion is self-contained. The difference between the transport distance and more common definitions of distance is elucidated for some well-chosen examples and it is shown where transport distances may be very useful alternatives to standard definitions of distance. The transport distance between a theoretical and experimental electronic absorption spectrum for SO 2 is studied and it is shown how the theoretical spectrum can be modified to fit the experimental spectrum better adjusting the theoretical band origin and the resolution of the theoretical spectrum. In conclusion, this analysis includes the calculation of transport maps between the theoretical and experimental spectra suggesting future applications of the methodology.

74 ATOMIC AND MOLECULAR PHYSICS↗

Analysis of differential scanning calorimetry data for aged plutonium

Differential scanning calorimetry data for samples of a 52 year old plutonium alloy with 3.3 at. % Ga that were heated beyond the melting point is analyzed using transition state theory to find activation energies for the δ to ε and ε to liquid phase transitions. A Bayesian statistical method involving a Gaussian process model is used to find mean values and confidence intervals for the activation energies. The activation energy for the δ to ε phase transition increases by 3.3 ± 3.8% per decade, relative to the case when all age related plutonium lattice point defects have been removed through annealing. The corresponding increase in activation energy for the ε to liquid transition is shown to be 7.1 ± 1.8% per decade. It is postulated that the change in activation energy with age for both phase transitions is caused, in part, by the accumulation of the same type of lattice point defects associated with the observed increase in elastic bulk modulus over time.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

KINEMATICS OF THE CO GAS IN THE INNER REGIONS OF THE TW Hya DISK

We present a detailed analysis of the spatially and spectrally resolved {sup 12}CO J = 2-1 and J = 3-2 emission lines from the TW Hya circumstellar disk, based on science verification data from the Atacama Large Millimeter/submillimeter Array (ALMA). These lines exhibit substantial emission in their high-velocity wings (with projected velocities out to 2.1 km s{sup -1}, corresponding to intrinsic orbital velocities >20 km s{sup -1}) that trace molecular gas as close as 2 AU from the central star. However, we are not able to reproduce the intensity of these wings and the general spatio-kinematic pattern of the lines with simple models for the disk structure and kinematics. Using three-dimensional non-local thermodynamic equilibrium molecular excitation and radiative transfer calculations, we construct some alternative models that successfully account for these features by modifying either (1) the temperature structure of the inner disk (inside the dust-depleted disk cavity; r < 4 AU), (2) the intrinsic (Keplerian) disk velocity field, or (3) the distribution of disk inclination angles (a warp). The latter approach is particularly compelling because a representative warped disk model qualitatively reproduces the observed azimuthal modulation of optical light scattered off the disk surface. In any model scenario, the ALMA data clearly require a substantial molecular gas reservoir located inside the region where dust optical depths are known to be substantially diminished in the TW Hya disk, in agreement with previous studies based on infrared spectroscopy. The results from these updated model prescriptions are discussed in terms of their potential physical origins, which might include dynamical perturbations from a low-mass companion with an orbital separation of a few AU.

79 ASTRONOMY AND ASTROPHYSICS↗

AN ALMA IMAGING STUDY OF METHYL FORMATE (HCOOCH{sub 3}) IN TORSIONALLY EXCITED STATES TOWARD ORION KL

We recently reported the first identification of rotational transitions of methyl formate (HCOOCH{sub 3}) in the second torsionally excited state toward Orion Kleinmann-Low (KL), observed with the Nobeyama 45 m telescope. In combination with the identified transitions of methyl formate in the ground state and the first torsional excited state, it was found that there is a difference in rotational temperature and vibrational temperature, where the latter is higher. In this study, high spatial resolution analysis by using Atacama Large Millimeter/Submillimeter Array (ALMA) science verification data was carried out to verify and understand this difference. Toward the Compact Ridge, two different velocity components at 7.3 and 9.1 km s{sup −1} were confirmed, while a single component at 7.3 km s{sup −1} was identified toward the Hot Core. The intensity maps in the ground, first, and second torsional excited states have quite similar distributions. Using extensive ALMA data, we determined the rotational and vibrational temperatures for the Compact Ridge and Hot Core by the conventional rotation diagram method. The rotational temperature and vibrational temperatures agree for the Hot Core and for one component of the Compact Ridge. At the 7.3 km s{sup −1} velocity component for the Compact Ridge, the rotational temperature was found to be higher than the vibrational temperature. This is different from what we obtained from the results by using the single-dish observation. The difference might be explained by the beam dilution effect of the single-dish data and/or the smaller number of observed transitions within the limited range of energy levels (≤30 K) of E{sub u} in the previous study.

79 ASTRONOMY AND ASTROPHYSICS↗

PROSPECT-II physics opportunities

We report the precision reactor oscillation and spectrum experiment, PROSPECT, has made world-leading measurements of reactor antineutrinos at short baselines. In its first phase, conducted at the high flux isotope reactor (HFIR) at Oak Ridge National Laboratory, PROSPECT produced some of the strongest limits on eV-scale sterile neutrinos, made a precision measurement of the reactor antineutrino spectrum from 235 U, and demonstrated the observation of reactor antineutrinos in an aboveground detector with good energy resolution and well-controlled backgrounds. The PROSPECT collaboration is now preparing an upgraded detector, PROSPECT-II, to probe yet unexplored parameter space for sterile neutrinos and contribute to a full resolution of the reactor antineutrino anomaly, a longstanding puzzle in neutrino physics. By pressing forward on the world’s most precise measurement of the 235 U antineutrino spectrum and measuring the absolute flux of antineutrinos from 235 U, PROSPECT-II will sharpen a tool with potential value for basic neutrino science, nuclear data validation, and nuclear security applications. Following a two-year deployment at HFIR, an additional PROSPECT-II deployment at a low enriched uranium reactor could make complementary measurements of the neutrino yield from other fission isotopes. PROSPECT-II provides a unique opportunity to continue the study of reactor antineutrinos at short baselines, taking advantage of demonstrated elements of the original PROSPECT design and close access to a highly enriched uranium reactor core.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

THE EVOLUTION OF THE ULTRAVIOLET LUMINOSITY FUNCTION FROM z {approx} 0.75 TO z {approx} 2.5 USING HST ERS WFC3/UVIS OBSERVATIONS

We present UV luminosity functions (LFs) at 1500 A derived from the Hubble Space Telescope Early Release Science WFC3/UVIS data acquired over {approx}50 arcmin{sup 2} of the GOODS-South field. The LFs are determined over the entire redshift range z = 0.75-2.5 using two methods, similar to those used at higher redshifts for Lyman break galaxies (LBGs): (1) 13 band UV+optical+NIR photometric redshifts to study galaxies in the range z = 0.5-2 in three bins of dz = 0.5 and (2) dropout samples in three redshift windows centered at z {approx} 1.5, z {approx} 1.9, and z {approx} 2.5. The characteristic luminosity dims by 1.5 mag from z = 2.5 to z = 0.75, consistent with earlier work. However, the other Schechter function parameters, the faint-end slope and the number density, are found to be remarkably constant over the range z = 0.75-2.5. Using these LF determinations, we find the UV luminosity density to increase by {approx}1.4 dex according to (1 + z){sup 2.58{+-}0.15} from z {approx} 0 to its peak at z {approx} 2.5. Strikingly, the inferred faint-end slopes for our LFs are all steeper than {alpha} = -1.5, in agreement with higher-redshift LBG studies. Since the faint-end slope in the local universe is found to be much flatter with {alpha} {approx_equal} -1.2, this poses the question as to when and how the expected flattening occurs. Despite relatively large uncertainties, our data suggest {alpha} {approx_equal} -1.7 at least down to z {approx} 1. These new results from such a shallow early data set demonstrate very clearly the remarkable potential of WFC3/UVIS for the thorough characterization of galaxy evolution over the full redshift range z {approx} 0.5 to z {approx} 3.

79 ASTRONOMY AND ASTROPHYSICS↗

THE FIRST DETECTION OF THE 232 GHz VIBRATIONALLY EXCITED H{sub 2}O MASER IN ORION KL WITH ALMA

We investigated the ALMA science verification data of Orion KL and found a spectral signature of the vibrationally excited H{sub 2}O maser line at 232.68670 GHz ({nu}{sub 2} = 1, 5{sub 5,0}-6{sub 4,3}). This line has been detected previously in circumstellar envelopes of late-type stars but not in young stellar objects such as Orion KL. Thus, this is the first detection of the 232 GHz vibrationally excited H{sub 2}O maser in star-forming regions. The distribution of the 232 GHz maser is concentrated at the position of the radio Source I, which is remarkably different from other molecular lines. The spectrum shows a double-peak structure at the peak velocities of -2.1 and 13.3 km s{sup -1}. It appears to be consistent with the 22 GHz H{sub 2}O masers and 43 GHz SiO masers observed around Source I. Thus, the 232 GHz H{sub 2}O maser around Source I would be excited by the internal heating by an embedded protostar, being associated with either the root of the outflows/jets or the circumstellar disk around Source I, as traced by the 22 GHz H{sub 2}O masers or 43 GHz SiO masers, respectively.

79 ASTRONOMY AND ASTROPHYSICS↗

pop-cosmos : redshifts and physical properties of KiDS-1000 galaxies

ABSTRACT Principled Bayesian inference of galaxy properties has not previously been performed for wide-area weak-lensing surveys with millions of sources. We address this gap by applying the pop-cosmos generative model to perform spectral energy distribution (SED) fitting for 4 million KiDS (Kilo-Degree Survey)-1000 galaxies. Calibrated on deep COSMOS2020 photometric data, pop-cosmos specifies a physically motivated prior over the galaxy population up to $z \simeq 6$ in stellar population synthesis (SPS) parameter space. Using the Speculator SPS emulator with GPU (graphics processing unit)-accelerated Markov Chain Monte Carlo sampling, we perform full posterior inference at 8.2 GPU seconds per galaxy, obtaining joint constraints on galaxy redshifts and physical properties. We validate photometric redshifts against $\sim \!185\,\!000$ KiDS galaxies cross-matched to Dark Energy Spectroscopic Instrument Data Release 1 spectroscopic samples, achieving low bias ($2\times 10^{-3}$), scatter ($\sigma _{\mathrm{MAD}}=0.03$), and outlier fraction (3.2 per cent) for the Bright Galaxy Survey, with comparable performance (bias $3\times 10^{-2}$, $\sigma _{\mathrm{MAD}}=0.05$, 1.0 per cent outliers) for luminous red galaxies (LRGs). Within the LRG sample, we identify massive, dusty, star-forming contaminants at $z \simeq 0.4$ satisfying standard colour selections for quenched populations. We infer trends in stellar mass, star formation, metallicity, and dust across five tomographic redshift bins consistent with established scaling relations. Using specific star formation rate constraints, we identify $\sim$7 per cent of KiDS-1000 galaxies as quenched, versus 37 per cent implied by conservative colour cuts. This enables the construction of weak-lensing samples defined by physical properties while mitigating intrinsic alignment systematics and preserving statistical power. Our analysis validates pop-cosmos out of sample, establishing it as a scalable approach for galaxy evolution and cosmological analyses with photometric surveys.

Halder, Anik [Institute of Astronomy and Kavli Ins↗