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At least 1,081 records · Page 60
All sourcesNASA NTRSDOE OSTI
DOE OSTI2016

A novel procedure on next generation sequencing data analysis using text mining algorithm

Background: Next-generation sequencing (NGS) technologies have provided researchers with vast possibilities in various biological and biomedical research areas. Efficient data mining strategies are in high demand for large scale comparative and evolutional studies to be performed on the large amounts of data derived from NGS projects. Topic modeling is an active research field in machine learning and has been mainly used as an analytical tool to structure large textual corpora for data mining. Methods: We report a novel procedure to analyse NGS data using topic modeling. It consists of four major procedures: NGS data retrieval, preprocessing, topic modeling, and data mining using Latent Dirichlet Allocation (LDA) topic outputs. The NGS data set of the Salmonella enterica strains were used as a case study to show the workflow of this procedure. The perplexity measurement of the topic numbers and the convergence efficiencies of Gibbs sampling were calculated and discussed for achieving the best result from the proposed procedure. Results: The output topics by LDA algorithms could be treated as features of Salmonella strains to accurately describe the genetic diversity of fliC gene in various serotypes. The results of a two-way hierarchical clustering and data matrix analysis on LDA-derived matrices successfully classified Salmonella serotypes based on the NGS data. The implementation of topic modeling in NGS data analysis procedure provides a new way to elucidate genetic information from NGS data, and identify the gene-phenotype relationships and biomarkers, especially in the era of biological and medical big data. Conclusion: The implementation of topic modeling in NGS data analysis provides a new way to elucidate genetic information from NGS data, and identify the gene-phenotype relationships and biomarkers, especially in the era of biological and medical big data.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Bound states of Ω baryons in light nuclei

Here, we investigate bound states of light Ω 3⁢𝑥 clusters (𝑥=𝑠,𝑐), motivated by the Ω 3⁢𝑠 ⁢𝑁 potential recently developed by the HAL QCD collaboration. To regularize this potential, we remove the deeply attractive core at 𝑟 < 0.4 fm and parametrize the long-range component (𝑟 > 0.4 fm) using a two-range Gaussian form. This procedure preserves the relevant two-body bound-state energy while having a negligible effect on the Ω 3⁢𝑠⁢ 𝑁⁢𝑁 and Ω 3⁢𝑠⁢ Ω 3⁢𝑠 ⁢𝑁 systems. An effective Ω 3⁢𝑠 ⁢𝛼 potential is then constructed by fitting a two-range Gaussian function to the long-range component of the folding potential, enabling calculations of the bound-state energies of the Ω 3⁢𝑠⁢ 𝛼, Ω 3⁢𝑠⁢ 𝛼⁢𝛼, and Ω 3⁢𝑠 ⁢Ω 3⁢𝑠 ⁢𝛼 systems. The regularization procedure leads to a substantial reduction in bound-state energies compared to those obtained with the original potential. We further extend the analysis to Ω 3⁢𝑐 -cluster systems by introducing an Ω 3⁢𝑐 ⁢𝑁 interaction, derived by comparing the existing Ω 3⁢𝑠⁢ Ω 3⁢𝑠 and Ω 3⁢𝑐 ⁢Ω 3⁢𝑐 potentials. Our results suggest that several parametrizations predict bound states in Ω 3⁢𝑐 -containing clusters. Finally, the Ω 3⁢𝑠 ⁢Ω 3⁢𝑠 interaction is described using a contactlike potential approach, motivated by the effective field theory.

binding energy & masses↗
DOE OSTI2018

Linking Associations of Rare Low-Abundance Species to Their Environments by Association Networks

Studies of microbial communities by targeted sequencing of rRNA genes lead to recovering numerous rare low-abundance taxa with unknown biological roles. We propose to study associations of such rare organisms with their environments by a computational framework based on transformation of the data into qualitative variables. Namely, we analyze the sparse table of putative species or OTUs (operational taxonomic units) and samples generated in such studies, also known as an OTU table, by collecting statistics on co-occurrences of the species and on shared species richness across samples. Based on the statistics we built two association networks, of the rare putative species and of the samples respectively, using a known computational technique, Association networks (Anets) developed for analysis of qualitative data. Clusters of samples and clusters of OTUs are then integrated and combined with metadata of the study to produce a map of associated putative species in their environments. We tested and validated the framework on two types of microbiomes, of human body sites and that of the Populus tree root systems. We show that in both studies the associations of OTUs can separate samples according to environmental or physiological characteristics of the studied systems.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Mechanisms of Retention and Transport of Fission Products in Virgin and Irradiated Nuclear Graphite

To fulfill the design and licensing requirements for advanced reactors, the U.S. Department of Energy (DOE) is specifically interested in targeted research to quantify the mechanisms of fission product transport and retention in graphitic grades that will likely be used in next-generation very/high temperature reactors, fluoride salt-cooled high temperature reactors and molten salt reactors. We have examined an integrated experimental-computational approach to determine the diffusivities of selected fission products – ruthenium (Ru) and silver (Ag) in five nuclear graphite grades – POCO AXF-5Q, POCO ZXF-5Q, PCEA, IG110, and NBG-18. Experimental investigation for diffusion of other fission products (iodine, cesium, and krypton) in graphite could not be carried out due to extreme evaporation due to high vapor pressure, despite several attempts incorporating various experimental schemes. Experimental investigation with irradiated graphite could not be carried out because necessary approval to transport irradiated graphite could not be obtained due to procedural reasons at ORNL and national policy change in UK. An effort was made to “produce” by ion sputtering, but it was discontinued because the outcome did not adequately represent irradiated graphite. Thin film and “cup-and-cap” methods were employed to deposit fission products, diffusion annealed were carried out in an argon atmosphere, and concentration profiles were determined by dynamic secondary ion mass spectroscopy depth profiling technique. Regardless of graphite type, anomalous diffusion behavior of Ru (i.e., lower than expected based on Arrhenius temperature dependence) at an intermediate temperature, around 600 to 700 °C, was observed. Diffusion behavior of silver on the other hand agreed well to the Arrhenius temperature dependence although the excessive evaporation of silver hampered the accurate determination of diffusivities at temperature higher than 900 °C. In general, silver was observed to diffuse faster than Ru in the temperature range compared from 500 to 900 °C, had consistently had higher pre-exponential factor corresponding to higher jump frequency. To understand the abnormal diffusional behavior of Ru in graphite in intermediate temperature range, a detailed microstructural analysis was carried out. Clustering of Ru into particles on the surface of graphite was observed around 700 °C corresponding to de-wetting and spheroidization. This change would influence the boundary condition of diffusion, although features of clustering was much smaller (<1 mm) than the SIMS raster size (120 x 120 mm). Raman spectroscopy also demonstrated that Raman peak intensity for Ru decreased significantly for samples annealed higher than 700 °C and presence of Ru in graphite altered the crystallinity of graphite. To further elucidate the abnormal diffusion behavior observed in intermediate temperature investigated, the vibrational properties of graphene, bilayer graphene and Kr atoms in bilayer graphene were investigated with molecular dynamics. Krypton, which is a fission product, was introduced between a bilayer graphene system to evaluate (i) whether the phonon dispersion curves change with high temperature in bilayer graphene (ii) whether the addition of Kr atoms between the bilayer introduces any significant change in the vibrational properties, and (iii) whether any change in the vibrational properties can be correlated to the diffusive behavior of Kr atoms. The results show that the Kr atoms indeed exhibit an anomalous diffusive behavior at 550°C. Phonon analysis shows that a few phonon frequencies are enhanced as much as 20 to 30 % with the addition of just 0.2 at.% Kr. So, this may explain the unexpected self-diffusivity of fission products.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2025

DESI-DR1 $3 \times 2$-pt analysis: consistent cosmology across weak lensing surveys

We present a joint cosmological analysis of projected galaxy clustering observations from the Dark Energy Spectroscopic Instrument Data Release 1 (DESI-DR1), and overlapping weak gravitational lensing observations from three datasets: the Kilo-Degree Survey (KiDS-1000), the Dark Energy Survey (DES-Y3), and the Hyper-Suprime-Cam Survey (HSC-Y3). This combination of large-scale structure probes allows us to measure a set of $3 \times 2$-pt correlation functions, breaking the degeneracies between parameters in cosmological fits to individual observables. We obtain mutually-consistent constraints on the parameter $S_8 = σ_8 \sqrt{Ω_{\rm m}/0.3} = 0.786^{+0.022}_{-0.019}$ from the combination of DESI-DR1 and DES-Y3, $S_8 = 0.760^{+0.020}_{-0.018}$ from KiDS-1000, and $S_8 = 0.771^{+0.026}_{-0.027}$ from HSC-Y3. These parameter determinations are consistent with fits to the Planck Cosmic Microwave Background dataset, albeit with $1.5-2σ$ lower values in the $S_8-Ω_{\rm m}$ plane. We perform our analysis with a unified pipeline tailored to the requirements of each cosmic shear survey, which self-consistently determines cosmological and astrophysical parameters. We generate an analytical covariance matrix for the correlation data including all cross-covariances between probes, and we design a new blinding procedure to safeguard our analysis against confirmation bias, whilst leaving goodness-of-fit statistics unchanged. Our study is part of a suite of papers that present joint cosmological analyses of DESI-DR1 and weak gravitational lensing datasets.

Porredon, A. [Madrid, CIEMAT; Edinburgh U., Inst. ↗
NASA NTRS1999

Characterizing the Small Scale Structure in Clusters of Galaxies

We have applied a wavelet transform analysis to quantify the small-scale (less than a few arcminutes) X-ray structure of clusters of galaxies to several clusters. Three of these clusters show interesting structure. In addition to the small scale structure in surface brightness, we have searched for temperature structure using Advanced Satellite for Cosmology and Astrophysics (ASCA) observations. For A754, we find a filamentary structure, similar to that previously detected in A85. For A119, we find small scale structure associated with both cool and hot regions with a hot filament extending to the northeast. For A1750, one of the first clusters to show substructure from Einstein, we have a rederived the substructure from the ROSAT observations. The ASCA observations show a hot region between the two small scale features - sub-clusters. The hot region shows that the two subclusters are merging and producing a shock wave at the leading edge of the interaction. This analysis had been applied to a sample of 17 clusters to determine the radial distribution of substructure in a sample. The number of detected substructures was rather small and it was decided to select a different cluster sample at larger redshift. This provided a larger radial range over which substructure could be detected. This new cluster sample also includes about 20 clusters and is being analyzed. Finally, we are considering how to compare the substructure parameters of nearby clusters with a more distant sample to see if one can extract cosmological information. Since substructure frequency should depend on the cosmological density parameter, it may be possible to derive new constraints by comparing nearby and distant clusters.

Forman, William R.↗
DOE OSTI2020

Cosmological constraints from CODEX galaxy clusters spectroscopically confirmed by SDSS-IV/SPIDERS DR16

ABSTRACT This paper presents a cosmological analysis based on the properties of X-ray selected clusters of galaxies from the CODEX survey which have been spectroscopically followed up within the SPIDERS programme as part of the sixteenth data release (DR16) of SDSS-IV. The cosmological sub-sample contains a total of 691 clusters over an area of 5350 deg2 with newly measured optical properties provided by a reanalysis of the CODEX source catalogue using redMaPPer and the DESI Legacy Imaging Surveys (DR8). Optical richness is used as a proxy for the cluster mass, and the combination of X-ray, optical, and spectroscopic information ensures that only confirmed virialized systems are considered. Clusters are binned in observed redshift, $\tilde{z} \in \left[0.1, 0.6 \right)$ and optical richness, $\tilde{\lambda } \in \left[25, 148 \right)$ and the number of clusters in each bin is modelled as a function of cosmological and richness–mass scaling relation parameters. A high-purity sub-sample of 691 clusters is used in the analysis and best-fitting cosmological parameters are found to be $\Omega _{m_{0}}=0.34^{+0.09}_{-0.05}$ and $\sigma _8=0.73^{+0.03}_{-0.03}$. The redshift evolution of the self-calibrated richness–mass relation is poorly constrained due to the systematic uncertainties associated with the X-ray component of the selection function (which assumes a fixed X-ray luminosity–mass relation with h = 0.7 and $\Omega _{m_{0}}=0.30$). Repeating the analysis with the assumption of no redshift evolution is found to improve the consistency between both cosmological and scaling relation parameters with respect to recent galaxy cluster analyses in the literature.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1992

Globular cluster photometry with the Hubble Space Telescope. I - Description of the method and analysis of the core of 47 Tuc

Accurate photometry for individual post-main-sequence stars in the core of the Galactic globular cluster 47 Tuc is presented and analyzed using an empirical point spread function model and Monte Carlo simulations. A V vs. V-I color-magnitude diagrams is constructed which shows several distinct stellar types, including RGB and HB stars. Twenty-four blue straggler stars are detected in 47 Tuc, more concentrated toward the center of the cluster than the giants. This supports the hypothesis is that the stragglers are either coalesced stars or members of binary systems that are more massive than single stars. The radial profile of the projected stellar density is flat in the central region of 47 Tuc with a core radius of 23 +/- 2 arcsec. No signature of a collapsed core is evident. The observed radial cumulative distribution of stars rules out the presence of a massive compact object in the center.

Guhathakurta, Puragra↗
DOE OSTI2024

Joint inference of multiplicative and additive systematics in galaxy density fluctuations and clustering measurements

Galaxy clustering measurements are a key probe of the matter density field in the Universe. With the era of precision cosmology upon us, surveys rely on precise measurements of the clustering signal for meaningful cosmological analysis. However, the presence of systematic contaminants can bias the observed galaxy number density, and thereby bias the galaxy two-point statistics. As the statistical uncertainties get smaller, correcting for these systematic contaminants becomes increasingly important for unbiased cosmological analysis. We present and validate a new method for understanding and mitigating both additive and multiplicative systematics in galaxy clustering measurements (two-point function) by joint inference of contaminants in the galaxy overdensity field (one-point function) using a maximum-likelihood estimator (MLE). We test this methodology with Kilo-Degree Survey-like mock galaxy catalogues and synthetic systematic template maps. We estimate the cosmological impact of such mitigation by quantifying uncertainties and possible biases in the inferred relationship between the observed and the true galaxy clustering signal. Our method robustly corrects the clustering signal to the sub-percent level and reduces numerous additive and multiplicative systematics from 1.5σ to less than 0.1σ for the scenarios we tested. In addition, we provide an empirical approach to identifying the functional form (additive, multiplicative, or other) by which specific systematics contaminate the galaxy number density. Even though this approach is tested and geared towards systematics contaminating the galaxy number density, the methods can be extended to systematics mitigation for other two-point correlation measurements.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2015

AGB sodium abundances in the globular cluster 47 Tucanae (NGC 104)

A recent analysis comparing the [Na/Fe] distributions of red giant branch (RGB) and asymptotic giant branch (AGB) stars in the Galactic globular cluster NGC 6752 found that the ratio of Na-poor to Na-rich stars changes from 30:70 on the RGB to 100:0 on the AGB. The surprising paucity of Na-rich stars on the AGB in NGC 6752 warrants additional investigations to determine if the failure of a significant fraction of stars to ascend the AGB is an attribute common to all globular clusters. Therefore, we present radial velocities, [Fe/H], and [Na/Fe] abundances for 35 AGB stars in the Galactic globular cluster 47 Tucanae (47 Tuc; NGC 104), and compare the AGB [Na/Fe] distribution with a similar RGB sample published previously. The abundances and velocities were derived from high-resolution spectra obtained with the Michigan/Magellan Fiber System and MSpec spectrograph on the Magellan–Clay 6.5 m telescope. We find the average heliocentric radial velocity and [Fe/H] values to be 〈RV{sub helio.}〉 = −18.56 km s{sup −1} (σ = 10.21 km s{sup −1}) and 〈[Fe/H]〉 = −0.68 (σ = 0.08), respectively, in agreement with previous literature estimates. The average [Na/Fe] abundance is 0.12 dex lower in the 47 Tuc AGB sample compared to the RGB sample, and the ratio of Na-poor to Na-rich stars is 63:37 on the AGB and 45:55 on the RGB. However, in contrast to NGC 6752, the two 47 Tuc populations have nearly identical [Na/Fe] dispersion and interquartile range values. The data presented here suggest that only a small fraction (≲20%) of Na-rich stars in 47 Tuc may fail to ascend the AGB, which is a similar result to that observed in M13. Regardless of the cause for the lower average [Na/Fe] abundance in AGB stars, we find that Na-poor stars and at least some Na-rich stars in 47 Tuc evolve through the early AGB phase. The contrasting behavior of Na-rich stars in 47 Tuc and NGC 6752 suggests that the RGB [Na/Fe] abundance alone is insufficient for predicting if a star will ascend the AGB.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

On the physical size of the Milky Way globular cluster NGC 7089 (M2)

ABSTRACT We study the outer regions of the Milky Way globular cluster NGC 7089 based on new Dark Energy Camera observations. The resulting background-cleaned stellar density profile reveals the existence of an extended envelope. We confirm previous results that cluster stars are found out up to ∼1° from the cluster’s centre, which is nearly three times the value of the most robust tidal radii estimations. We also used results from direct N-body simulations in order to compare with the observations. We found a fairly good agreement between the observed and numerically generated stellar density profiles. Because of the existence of gaps and substructures along globular cluster tidal tails, we closely examined the structure of the outer cluster region beyond the Jacobi radius. We extended the analysis to a sample of 35 globular clusters, 20 of them with observed tidal tails. We found that if the stellar density profile follows a power law ∝ r−α, the α slope correlates with the globular cluster present mass, in the sense that, the more massive the globular cluster, the smaller the α value. This trend is not found in globular clusters without observed tidal tails. The origin of such a phenomenon could be related, among other reasons, to the proposed so-called potential escapers or to the formation of globular clusters within dark matter minihaloes.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

The Dynamics of the Wide-angle Tailed (WAT) Galaxy Cluster A562

We present the first in-depth dynamical analysis of the archetypal wide-angle tailed (WAT) cluster A562. We have combined Gemini observations with archival data from the literature to form a sample of 76 cluster members and derived a mean redshift of 0.1088 ± 0.0004 and a velocity dispersion of 919 ± 116 km s{sup −1}. This relatively large velocity dispersion suggests either a very massive cluster (M {sub dyn} > 6.9 × 10{sup 14} M {sub ☉}) and/or a merger system. The merger model is supported by a non-Gaussian galaxy velocity distribution, an elongated spatial distribution of likely cluster members, and an elongated X-ray emitting gas. This scenario would generate the bulk flow motion of the intracluster medium that can exert enough ram pressure to bend the radio jets. Thus, our observations support the model in which a recent off-axis merger event produced the cluster wide conditions needed to shape the WAT in A562.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2014

Multiresolution edge detection using enhanced fuzzy c-means clustering for ultrasound image speckle reduction

Purpose: Speckle suppression in ultrasound (US) images of various anatomic structures via a novel speckle noise reduction algorithm. Methods: The proposed algorithm employs an enhanced fuzzy c-means (EFCM) clustering and multiresolution wavelet analysis to distinguish edges from speckle noise in US images. The edge detection procedure involves a coarse-to-fine strategy with spatial and interscale constraints so as to classify wavelet local maxima distribution at different frequency bands. As an outcome, an edge map across scales is derived whereas the wavelet coefficients that correspond to speckle are suppressed in the inverse wavelet transform acquiring the denoised US image. Results: A total of 34 thyroid, liver, and breast US examinations were performed on a Logiq 9 US system. Each of these images was subjected to the proposed EFCM algorithm and, for comparison, to commercial speckle reduction imaging (SRI) software and another well-known denoising approach, Pizurica's method. The quantification of the speckle suppression performance in the selected set of US images was carried out via Speckle Suppression Index (SSI) with results of 0.61, 0.71, and 0.73 for EFCM, SRI, and Pizurica's methods, respectively. Peak signal-to-noise ratios of 35.12, 33.95, and 29.78 and edge preservation indices of 0.94, 0.93, and 0.86 were found for the EFCM, SIR, and Pizurica's method, respectively, demonstrating that the proposed method achieves superior speckle reduction performance and edge preservation properties. Based on two independent radiologists’ qualitative evaluation the proposed method significantly improved image characteristics over standard baseline B mode images, and those processed with the Pizurica's method. Furthermore, it yielded results similar to those for SRI for breast and thyroid images significantly better results than SRI for liver imaging, thus improving diagnostic accuracy in both superficial and in-depth structures. Conclusions: A new wavelet-based EFCM clustering model was introduced toward noise reduction and detail preservation. The proposed method improves the overall US image quality, which in turn could affect the decision-making on whether additional imaging and/or intervention is needed.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2019

Dark Energy Survey Year 1 results: constraints on intrinsic alignments and their colour dependence from galaxy clustering and weak lensing

Abstract We perform a joint analysis of intrinsic alignments and cosmology using tomographic weak lensing, galaxy clustering, and galaxy–galaxy lensing measurements from Year 1 (Y1) of the Dark Energy Survey. We define early- and late-type subsamples, which are found to pass a series of systematics tests, including for spurious photometric redshift error and point spread function correlations. We analyse these split data alongside the fiducial mixed Y1 sample using a range of intrinsic alignment models. In a fiducial non-linear alignment model analysis, assuming a flat Λ cold dark matter cosmology, we find a significant difference in intrinsic alignment amplitude, with early-type galaxies favouring $A_\mathrm{IA} = 2.38^{+0.32}_{-0.31}$ and late-type galaxies consistent with no intrinsic alignments at $0.05^{+0.10}_{-0.09}$. The analysis is repeated using a number of extended model spaces, including a physically motivated model that includes both tidal torquing and tidal alignment mechanisms. In multiprobe likelihood chains in which cosmology, intrinsic alignments in both galaxy samples and all other relevant systematics are varied simultaneously, we find the tidal alignment and tidal torquing parts of the intrinsic alignment signal have amplitudes $A_1 = 2.66 ^{+0.67}_{-0.66}$, $A_2=-2.94^{+1.94}_{-1.83}$, respectively, for early-type galaxies and $A_1 = 0.62 ^{+0.41}_{-0.41}$, $A_2 = -2.26^{+1.30}_{-1.16}$ for late-type galaxies. In the full (mixed) Y1 sample the best constraints are $A_1 = 0.70 ^{+0.41}_{-0.38}$, $A_2 = -1.36 ^{+1.08}_{-1.41}$. For all galaxy splits and IA models considered, we report cosmological parameter constraints consistent with the results of the main DES Y1 cosmic shear and multiprobe cosmology papers.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2015

RED SUPERGIANTS AS COSMIC ABUNDANCE PROBES: THE FIRST DIRECT METALLICITY DETERMINATION OF NGC 4038 IN THE ANTENNAE

We present a direct determination of the stellar metallicity in the close pair galaxy NGC 4038 (D = 20 Mpc) based on the quantitative analysis of moderate-resolution KMOS/Very Large Telescope spectra of three super star clusters. The method adopted in our analysis has been developed and optimized to measure accurate metallicities from atomic lines in the J-band of single red supergiant (RSG) or RSG-dominated star clusters. Hence, our metallicity measurements are not affected by the biases and poorly understood systematics inherent to strong line H ii methods, which are routinely applied to massive data sets of galaxies. We find [Z] = +0.07 ± 0.03 and compare our measurements to H ii strong line calibrations. Our abundances and literature data suggest the presence of a flat metallicity gradient, which can be explained as redistribution of metal-rich gas following the strong interaction.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Accelerating the Structure Exploration of Diverse Bi–Pt Nanoclusters via Physics‐Informed Machine Learning Potential and Particle Swarm Optimization

Bimetallic Bi–Pt nanoclusters exhibit diverse structural motifs, including core-shell, Janus, and mixed alloy configurations, due to the unique bonding characteristics between Bi and Pt atoms. Using density functional theory refinements from ChIMES physically machine-learned potential and CALYPSO particle swarm optimization global searches, 34 Bi20-Pt20 nanoclusters are systematically classified. The results reveal that Bi atoms predominantly occupy surface sites, driven by charge transfer effects. Cohesive energy trends alone prove insufficient for structure differentiation, necessitating a data-driven approach employing principal component analysis and K-means clustering. Furthermore, vibrational, electronic, and infrared spectral analyses provide additional insights into structure-property relationships. The findings offer an original framework for the automated classification and analysis of bimetallic nanoclusters, enhancing the understanding of their stability and functional properties.

bimetallic nanoparticles↗
DOE OSTI2019

The Aemulus Project. III. Emulation of the Galaxy Correlation Function

Using the N-body simulations of the Aemulus Project, we construct an emulator for the nonlinear clustering of galaxies in real and redshift space. We construct our model of galaxy bias using the halo occupation framework, accounting for possible velocity bias. The model includes 15 parameters, including both cosmological and galaxy bias parameters. We demonstrate that our emulator achieves ~1% precision at the scales of interest, 0.1 h -1 Mpc < r < 10 h -1 Mpc, and recovers the true cosmology when tested against independent simulations. Our primary parameters of interest are related to the growth rate of structure, f, and its degenerate combination, fσ 8 . Using this emulator, we show that the constraining power on these parameters monotonically increases as smaller scales are included in the analysis, all the way down to 0.1 h -1 Mpc. For a BOSS-like survey, the constraints on fσ 8 from r < 30 h -1 Mpc scales alone are nearly a factor of two tighter than those from the fiducial BOSS analysis of redshift-space clustering using perturbation theory at larger scales. The combination of real- and redshift-space clustering allows us to break the degeneracy between f and σ 8, yielding an 11% constraint on f alone for a BOSS-like analysis. The current Aemulus simulations limit this model to surveys of massive galaxies. Future simulations will allow this framework to be extended to all galaxy target types, including emission-line galaxies.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2018

High‐fidelity detection of crop biomass quantitative trait loci from low‐cost imaging in the field

Abstract Field‐based, rapid, and nondestructive techniques for assessing plant productivity are needed to accelerate the discovery of genotype‐to‐phenotype relationships in next‐generation biomass grass crops. The use of hemispherical imaging and light attenuation modeling was evaluated against destructive harvest measures with respect to their ability to accurately capture phenotypic and genotypic relationships in a field‐grown grass crop. Plant area index ( PAI ) estimated from below‐canopy hemispherical images, as well as a suite of thirteen traits assessed by manual destructive harvests, were measured in a Setaria recombinant inbred line mapping population segregating for aboveground productivity and architecture. A significant correlation was observed between PAI and biomass production across the population at maturity ( r 2 = .60), as well as for select diverse genotypes sampled repeatedly over the growing season ( r 2 = .79). Twenty‐seven quantitative trait loci ( QTL ) were detected for manually collected traits associated with biomass production. Of these, twenty‐one were found in four clusters of colocalized QTL . Analysis of image‐based estimates of PAI successfully identified all four QTL hot spots for biomass production. QTL for PAI had greater overlap with those detected for traits associated with biomass production than with those for plant architecture and biomass partitioning. Hemispherical imaging is an affordable and scalable method, which demonstrates how high‐throughput phenotyping can identify QTL related to biomass production of field trials in place of destructive harvests that are labor, time, and material intensive.

09 BIOMASS FUELS↗