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At least 109 records · Page 6

Global Characterization and Monitoring of Forest Cover Using Landsat Data: Opportunities and Challenges

The compilation of global Landsat data-sets and the ever-lowering costs of computing now make it feasible to monitor the Earth's land cover at Landsat resolutions of 30 m. In this article, we describe the methods to create global products of forest cover and cover change at Landsat resolutions. Nevertheless, there are many challenges in ensuring the creation of high-quality products. And we propose various ways in which the challenges can be overcome. Among the challenges are the need for atmospheric correction, incorrect calibration coefficients in some of the data-sets, the different phenologies between compilations, the need for terrain correction, the lack of consistent reference data for training and accuracy assessment, and the need for highly automated characterization and change detection. We propose and evaluate the creation and use of surface reflectance products, improved selection of scenes to reduce phenological differences, terrain illumination correction, automated training selection, and the use of information extraction procedures robust to errors in training data along with several other issues. At several stages we use Moderate Resolution Spectroradiometer data and products to assist our analysis. A global working prototype product of forest cover and forest cover change is included.

Global↗

Earth Science Deep Learning: Applications and Lessons Learned

Deep Learning: A subfield of machine learning; Algorithms inspired by function of the brain; Scales with amount of training data; Powerful tool without the need for feature engineering; Suitable for Earth Science applications. Deep Learning for Earth science at MSFC (Marshall Space Flight Center): Phenomena identification; Hurricane intensity (wind speed) estimation; Severe storm (hailstorm) detection; Transverse bands detection; Entity extraction for knowledge graph creation; Ephemeral water detection.

Labeled Data↗

Analyzing Machine Learning Predictions of Passive Microwave Brightness Temperature Spectral Difference Over Snow-Covered Terrain in High Mountain Asia

Snow is an important component of the terrestrial freshwater budget in high mountainAsia (HMA) and contributes to the runoff in Himalayan rivers through snowmelt. Despitethe importance of snow in HMA, considerable spatiotemporal uncertainty exists across the different estimates of snow water equivalent for this region. In order to better estimate snow water equivalent, radiative transfer models are often used in conjunction with microwave brightness temperature measurements. In this study, the efficacy of support vector machines (SVMs), a machine learning technique, to predict passive microwave brightness temperature spectral difference (1Tb) as a function of geophysical variables (snow water equivalent, snow depth, snow temperature, and snow density) is explored through a sensitivity analysis. The use of machine learning (as opposed to radiative transfer models) is a relatively new and novel approach for improving snow water equivalent estimates. The Noah-MP land surface model within the NASALand Information System framework is used to simulate the hydrologic cycle over HMA and model geophysical variables that are then used for SVM training. The SVMsserve as a nonlinear map between the geophysical space (modeled in Noah-MP) andthe observation space (1Tb as measured by the radiometer). Advanced MicrowaveScanning Radiometer-Earth Observing System measured passive microwave brightness temperatures over snow-covered locations in the HMA region are used as training data during the SVM training phase. Sensitivity of well-trained SVMs to each Noah-MP modeled state variable is assessed by computing normalized sensitivity coefficients. Sensitivity analysis results generally conform with the known first-order physics. Input states that increase volume scattering of microwave radiation, such as snow density and snow water equivalent, exhibit a plurality of positive normalized sensitivity coefficients. In general, snow temperature was the most sensitive input to the SVM predictions. The sensitivity of each state is location and time dependent. The signs of normalized sensitivity coefficients that indicate physical irrationality are ascribed to significant cross-correlation between Noah-MP simulated states and decreased SVM prediction capability at specific locations due to insufficient training data. SVM prediction pitfalls do exist that serve to highlight the limitations of this particular machine learning algorithm.

high mountain Asia↗

Deep Neural Network for Precision Multi-band Infrared Image Segmentation

Image segmentation is one of the fundamental steps in computer vision. Separating targets from background clutter with high precision is a challenging operation for both humans and computers. Currently, segmenting objects from IR images is done by tedious manual work. The implementation of a Deep Neural Network (DNN) to perform precision segmentation of multi-band IR video images is presented. A customized pix2pix DNN with multiple layers of generative encoder/decoder and discriminator architecture is used in the IR image segmentation process. Real and synthetic images and ground truths are employed to train the DNN. Iterative training is performed to achieve optimum accuracy of segmentation using a minimal number of training data. Special training images are created to enhance the missing features and to increase the segmentation accuracy of the objects. Retraining strategies are developed to minimize the DNN training time. Single pixel accuracy has been achieved in IR target boundary segmentation using DNNs. The segmentation accuracy between the customized pix2pix DNN and simple thresholding, GraphCut, simple neural network and ResNet models are compared.

Torres, Gil↗

Microstructure Segmentation with Deep Learning Encoders Pre-Trained on a Large Microscopy Dataset

This study examined the improvement of microscopy segmentation accuracy by transfer learning from a large dataset of microscopy images called MicroNet. Many neural network encoder architectures, including VGG, Inception, and ResNet, were trained on over 100,000 labelled microscopy images from 54 classes. These pre-trained encoders were then embedded into multiple segmentation architectures including U-Net and DeepLabV3+ to evaluate segmentation performance on newly created benchmark microscopy datasets. Compared to ImageNet pre-training, models pre-trained on MicroNet generalized better to out-of-distribution micrographs taken under different imaging and sample conditions and were more accurate with less training data. When training with only a single Ni-superalloy image, pre-training on MicroNet produced a 72.2 percent reduction in relative segmentation error. These results suggest that transfer learning from large in-domain datasets generate models with learned feature representations that are more useful for downstream tasks and will likely improve any microscopy image analysis technique that can leverage pre-trained encoders.

machine learning↗

Assessing Alaskan boreal forest landcover affected by climate-wildfire interactions from ground truth surveys and NASA airborne remote sensing

Alaska’s boreal forest is facing unprecedented challenges under rapid climate warming (increasingly severe fires, droughts, pest/disease outbreaks) that may destabilize its function as a global carbon sink. Forests near Fairbanks may be especially vulnerable, impacting air quality and ecosystem services. We combined GT (ground truthing) with Airborne Visible InfraRed Imaging Spectrometer (AVIRIS-NG) images collected by the NASA Arctic-Boreal Vulnerability Experiment (ABoVE) program (2017-2019) to assess landcover change at five recently burned sites (2001-2019) of different fire severities and moisture regimes within 30 miles of Fairbanks. GT included tree seedling counts, understory % cover and >50% leaf canopy color assessment. 36 circular plots (1/30 ha radius) including 6 moderate to severely burned plots were selected across sites. 31 additional sites including 12 burned sites were geotagged in photos. AVIRIS images were processed from 29 spectral bands selected to identify changes in chlorophyll and water content. Images were segmented into natural boundaries (polygons) using ENVI 5.5 software. A spectral library of 8 AVIRIS bands with high between-class/low within-class variation was used in two random forest models to predict vegetation classes (model 1: 12 classes, model 2: 14 classes) in each AVIRIS scene, using 20% of the data as training data. Model 2 classified 20% more polygons overall, but only 42% of GT/geotagged polygons were correctly classified by both models. More forest sites were correctly classified (63%) than open vegetation (32%) or post-fire sites (46%). 50% of aspen forest and post-fire polygons were misclassified as shrubland. GT revealed that post-fire plots supported 134,000 (± 48,000) tree seedlings and saplings ha-1 (0.2 - 4 m height, 64% deciduous) versus 2500 (± 2100) shrubs ha-1 (1-6 m height). > 50% canopy browning was observed in conifer forest (8 plots) with no signs of insect infestation. Canopy herbivory > 50% (leaf miner, leaf beetle) and moose herbivory of tree bark was seen across aspen sites. Our study suggests: 1) low canopy vegetation presents challenges for improved landcover classification, and 2) aspen forest should be differentiated in vegetation maps which would aid in tracking herbivory.

Alaska↗

Microstructure Segmentation With Deep Learning Encoders Pre-Trained on a Large Microscopy Dataset

This study examined the improvement of microscopy segmentation intersection over union accuracy by transfer learning from a large dataset of microscopy images called MicroNet. Many neural network encoder architectures were trained on over 100,000 labeled microscopy images from 54 material classes. These pre-trained encoders were then embedded into multiple segmentation architectures including UNet and DeepLabV3+ to evaluate segmentation performance on created benchmark microscopy datasets. Compared to ImageNet pre-training, models pre-trained on MicroNet generalized better to out-of-distribution micrographs taken under different imaging and sample conditions and were more accurate with less training data. When training with only a single Ni-superalloy image, pre-training on MicroNet produced a 72.2% reduction in relative intersection over union error. These results suggest that transfer learning from large in-domain datasets generate models with learned feature representations that are more useful for downstream tasks and will likely improve any microscopy image analysis technique that can leverage pre-trained encoders.

machine learning↗

Replicating Machine Learning Experiments in Materials Science

Transparency and reproducibility are important aspects of validation for Machine Learning (ML) models that are not fully understood and applies independently of the application domain.We offer a case study of reproducibility that highlights the challenges encountered when attempting to reproduce analyzes obtained with Machine Learning methods in materials informatics. Our study explores prediction results obtained with ML models and issues in training data serving as input. We discuss challenges related to theory-driven and numerical errors in training data, lack of reproducibility across platforms and versions, and effects of randomness when varying hyperparameters. In addition to model accuracy, a main metric of interest in the ML community, our results show that model sensitivity may be equally important for applying ML in domain applications such a materials science.

97 MATHEMATICS AND COMPUTING↗

Utilizing Physics-Informed Synthetic Data to Train a Digital Twin for Predicting Reactor Operations

Understanding techniques to strengthen the nuclear nonproliferation regime is crucial in reducing the creation of nuclear weaponry on the basis of advancements in the nuclear energy industry. Prior to construction of a nuclear power plant, it is necessary to understand the proliferation potential of the plant’s reactor. Digital twins serve as a unique solution to recognizing reactor behavior indicative of nuclear proliferation. The following research conducted serves as a validation to training a digital twin on synthetic data fabricated via means of reactor physics simulations based on parameters of Idaho State University’s AGN-201 reactor. The synthetic data is utilized to train a long short-term memory (LSTM) recurrent neural network model. The accuracy of the predicted data is measured against real operational data to verify the reliability of the synthetic data creation methods and if these methods should be used in the future to inform inspectors of a reactor’s proliferation capabilities.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗

Learning Memento archive routing with Character-based Artificial Neural Networks

This white paper describes a series of tests that were performed to determine if a neural network could learn patterns from a service that maintains a cache of routing decisions for the discovery of version information for discrete web-at-large URLs. Labeled training data was derived from a log file that records the by-archive availability of Memento availability for a given URL. Training data sets were generated from this log file on a by-archive basis (thus making it a binary classification problem). Each training data set consisted of equal numbers of hit and miss URLs, selected at random. The URLs were converted to a normalized numeric representation where each integer in a URL training vector represents a character in that URL. The corresponding label indicates whether or not Mementos were available for that URL in the selected archive. The training data matrix and the label vector became input to a neural network. A number of neural network architectures and network hyperparameters were explored, however the log entries themselves were used as-is, without any feature engineering, beyond the aforementioned normalization.

97 MATHEMATICS AND COMPUTING↗

SU-C-207B-05: Tissue Segmentation of Computed Tomography Images Using a Random Forest Algorithm: A Feasibility Study

Purpose: Develop an automated Random Forest algorithm for tissue segmentation of CT examinations. Methods: Seven materials were classified for segmentation: background, lung/internal gas, fat, muscle, solid organ parenchyma, blood/contrast, and bone using Matlab and the Trainable Weka Segmentation (TWS) plugin of FIJI. The following classifier feature filters of TWS were investigated: minimum, maximum, mean, and variance each evaluated over a pixel radius of 2n, (n = 0–4). Also noise reduction and edge preserving filters, Gaussian, bilateral, Kuwahara, and anisotropic diffusion, were evaluated. The algorithm used 200 trees with 2 features per node. A training data set was established using an anonymized patient’s (male, 20 yr, 72 kg) chest-abdomen-pelvis CT examination. To establish segmentation ground truth, the training data were manually segmented using Eclipse planning software, and an intra-observer reproducibility test was conducted. Six additional patient data sets were segmented based on classifier data generated from the training data. Accuracy of segmentation was determined by calculating the Dice similarity coefficient (DSC) between manual and auto segmented images. Results: The optimized autosegmentation algorithm resulted in 16 features calculated using maximum, mean, variance, and Gaussian blur filters with kernel radii of 1, 2, and 4 pixels, in addition to the original CT number, and Kuwahara filter (linear kernel of 19 pixels). Ground truth had a DSC of 0.94 (range: 0.90–0.99) for adult and 0.92 (range: 0.85–0.99) for pediatric data sets across all seven segmentation classes. The automated algorithm produced segmentation with an average DSC of 0.85 ± 0.04 (range: 0.81–1.00) for the adult patients, and 0.86 ± 0.03 (range: 0.80–0.99) for the pediatric patients. Conclusion: The TWS Random Forest auto-segmentation algorithm was optimized for CT environment, and able to segment seven material classes over a range of body habitus and CT protocol parameters with an average DSC of 0.86 ± 0.04 (range: 0.80–0.99).

60 APPLIED LIFE SCIENCES↗

Gradient-based optimization of complex nanoparticle heterostructures enabled by deep learning on heterogeneous graphs

Applications of deep learning (DL) to design nanomaterials are hampered by a lack of suitable data representations and training data. Here, in this study, we report efforts to overcome these limitations and leverage DL to optimize the nonlinear optical properties of core–shell upconverting nanoparticles (UCNPs). UCNPs, which have applications in fields such as biosensing, super-resolution microscopy and three-dimensional printing, can emit visible and ultraviolet light from near-infrared excitations. We report a large-scale dataset of UCNP emission spectra based on accurate but expensive kinetic Monte Carlo simulations (N > 6,000) and use these data to train a heterogeneous graph neural network using a physically motivated representation of UCNP nanostructure. Applying gradient-based optimization on the trained graph neural network, we identify structures with 6.5× higher predicted emission under 800-nm illumination than any UCNP in our training set. Our work reveals design principles for UCNP heterostructures and presents a roadmap for DL-based inverse design of nanomaterials.

Sivonxay, Eric [Lawrence Berkeley National Laborat↗

Global Variability of Mesoscale Convective System Anvil Structure from A-Train Satellite Data

Mesoscale convective systems (MCSs) in the tropics produce extensive anvil clouds, which significantly affect the transfer of radiation. This study develops an objective method to identify MCSs and their anvils by combining data from three A-train satellite instruments: Moderate Resolution Imaging Spectroradiometer (MODIS) for cloud-top size and coldness, Advanced Microwave Scanning Radiometer for Earth Observing System (AMSR-E) for rain area size and intensity, and CloudSat for horizontal and vertical dimensions of anvils. The authors distinguish three types of MCSs: small and large separated MCSs and connected MCSs. The latter are MCSs sharing a contiguous rain area. Mapping of the objectively identified MCSs shows patterns of MCSs that are consistent with previous studies of tropical convection, with separated MCSs dominant over Africa and the Amazon regions and connected MCSs favored over the warm pool of the Indian and west Pacific Oceans. By separating the anvil from the raining regions of MCSs, this study leads to quantitative global maps of anvil coverage. These maps are consistent with the MCS analysis, and they lay the foundation for estimating the global radiative effects of anvil clouds. CloudSat radar data show that the modal thickness of MCS anvils is about 4-5 km. Anvils are mostly confined to within 1.5-2 times the equivalent radii of the primary rain areas of the MCSs. Over the warm pool, they may extend out to about 5 times the rain area radii. The warm ocean MCSs tend to have thicker non-raining and lightly raining anvils near the edges

Yuan, Jian↗

Compiling a Comprehensive EVA Training Dataset for NASA Astronauts

Training for a spacewalk or extravehicular activity (EVA) is considered a hazardous duty for NASA astronauts. This places astronauts at risk for decompression sickness as well as various musculoskeletal disorders from working in the spacesuit. As a result, the operational and research communities over the years have requested access to EVA training data to supplement their studies. The purpose of this paper is to document the comprehensive EVA training data set that was compiled from multiple sources by the Lifetime Surveillance of Astronaut Health (LSAH) epidemiologists to investigate musculoskeletal injuries. The EVA training dataset does not contain any medical data, rather it only documents when EVA training was performed, by whom and other details about the session. The first activities practicing EVA maneuvers in water were performed at the Neutral Buoyancy Simulator (NBS) at the Marshall Spaceflight Center in Huntsville, Alabama. This facility opened in 1967 and was used for EVA training until the early Space Shuttle program days. Although several photographs show astronauts performing EVA training in the NBS, records detailing who performed the training and the frequency of training are unavailable. Paper training records were stored within the NBS after it was designated as a National Historic Landmark in 1985 and closed in 1997, but significant resources would be needed to identify and secure these records, and at this time LSAH has not pursued acquisition of these early training records. Training in the NBS decreased when the Johnson Space Center in Houston, Texas, opened the Weightless Environment Training Facility (WETF) in 1980. Early training records from the WETF consist of 11 hand-written dive logbooks compiled by individual workers that were digitized at the request of LSAH. The WETF was integral in the training for Space Shuttle EVAs until its closure in 1998. The Neutral Buoyancy Laboratory (NBL) at the Sonny Carter Training Facility near JSC opened in March 1997 and is the current site for US EVA training. Other space agencies also have used water to simulate weightlessness and train for EVAs. Russia has a training facility similar to the NBL named the Hydro Lab. The Hydro Lab began operations at the Gagarin Cosmonaut Training Center (GCTC) in 1980 and has been used extensively to the present. Although a majority of training in the Hydro Lab uses the Russian Orlan suit, a small number of sessions have been conducted using a NASA suit. The Japanese Weightlessness Environment Test System (WETS) went into service at the Tsukuba Space Center in 1997 but was closed in 2011 due to extensive earthquake damage. Several sessions were performed using a NASA suit, but these sessions were short and considered "development" runs. LSAH has assembled records from the WETF, NBL and Hydro Lab. Recording of the EVA training data has changed considerably from 1967 to present. The goal of early record keeping was to track use of hardware components, and the person involved was treated as a suited operator, not as a focus of interest. Records from the past two decades are fairly precise with the person, date, suit type and size noted. On occasion the length of the session was listed, but this data is not included on all records. Records were merged from data sources and extensive cleaning of the records was required since the multiple sources frequently overlapped and duplicated records. To date the LSAH EVA training dataset includes over 12,500 EVA training sessions performed by NASA astronauts since 1981. The following variables are included for most records: Name, Sex, Event date, Event name, HUT type, HUT size, Facility, and Estimated run time. For a smaller subset of records, the following variables are available: Actual run time, Time inverted, and the suit components Waist bearing type, Shoulder harness, Shoulder pads, and Teflon inserts. The LSAH dataset is currently the most complete resource for data regarding EVA training sessions performed by NASA astronauts. However, it is not 100 percent complete since the WETS (Japan) and NBS (Marshall) training facility data were not included. This dataset has been compiled by LSAH to study the relationship of EVA training to musculoskeletal injuries but has many other non-medical applications. This dataset can be provided to other groups in order to respond to program and research questions with appropriate board approvals.

Laughlin, M. S.↗

Generating Ground Reference Data for a Global Impervious Surface Survey

We are engaged in a project to produce a 30m impervious cover data set of the entire Earth for the years 2000 and 2010 based on the Landsat Global Land Survey (GLS) data set. The GLS data from Landsat provide an unprecedented opportunity to map global urbanization at this resolution for the first time, with unprecedented detail and accuracy. Moreover, the spatial resolution of Landsat is absolutely essential to accurately resolve urban targets such as buildings, roads and parking lots. Finally, with GLS data available for the 1975, 1990, 2000, and 2005 time periods, and soon for the 2010 period, the land cover/use changes due to urbanization can now be quantified at this spatial scale as well. Our approach works across spatial scales using very high spatial resolution commercial satellite data to both produce and evaluate continental scale products at the 30m spatial resolution of Landsat data. We are developing continental scale training data at 1m or so resolution and aggregating these to 30m for training a regression tree algorithm. Because the quality of the input training data are critical, we have developed an interactive software tool, called HSegLearn, to facilitate the photo-interpretation of high resolution imagery data, such as Quickbird or Ikonos data, into an impervious versus non-impervious map. Previous work has shown that photo-interpretation of high resolution data at 1 meter resolution will generate an accurate 30m resolution ground reference when coarsened to that resolution. Since this process can be very time consuming when using standard clustering classification algorithms, we are looking at image segmentation as a potential avenue to not only improve the training process but also provide a semi-automated approach for generating the ground reference data. HSegLearn takes as its input a hierarchical set of image segmentations produced by the HSeg image segmentation program [1, 2]. HSegLearn lets an analyst specify pixel locations as being either positive or negative examples, and displays a classification of the study area based on these examples. For our study, the positive examples are examples of impervious surfaces and negative examples are examples of non-impervious surfaces. HSegLearn searches the hierarchical segmentation from HSeg for the coarsest level of segmentation at which selected positive example locations do not conflict with negative example locations and labels the image accordingly. The negative example regions are always defined at the finest level of segmentation detail. The resulting classification map can be then further edited at a region object level using the previously developed HSegViewer tool [3]. After providing an overview of the HSeg image segmentation program, we provide a detailed description of the HSegLearn software tool. We then give examples of using HSegLearn to generate ground reference data and conclude with comments on the effectiveness of the HSegLearn tool.

Tilton, James C.↗

Machine learning model inputs, outputs, and scripts associated with “Artificial intelligence-guided iterations between observations and modeling significantly improve environmental predictions”

NOTE: The manuscript associated with this data package is currently in review. The data may be revised based on reviewer feedback. Upon manuscript acceptance, this data package will be updated with the final dataset and additional metadata. This data package is associated with the manuscript “Artificial intelligence-guided iterations between observations and modeling significantly improve environmental predictions” (Malhotra et al., in prep). This effort was designed following ICON (integrated, coordinated, open, and networked) principles to facilitate a model-experiment (ModEx) iteration approach, leveraging crowdsourced sampling across the contiguous United States (CONUS). New machine learning models were created every month to guide sampling locations. Data from the resulting samples were used to test and rebuild the machine learning models for the next round of sampling guidance. Associated sediment and water geochemistry and in situ sensor data can be found at https://data.ess-dive.lbl.gov/datasets/doi:10.15485/1923689, https://data.ess-dive.lbl.gov/datasets/doi:10.15485/1729719, and https://data.ess-dive.lbl.gov/datasets/doi:10.15485/1603775. This data package is associated with two GitHub repositories found at https://github.com/parallelworks/dynamic-learning-rivers and https://github.com/WHONDRS-Hub/ICON-ModEx_Open_Manuscript. In addition to this readme, this data package also includes two file-level metadata (FLMD) files that describes each file and two data dictionaries (DD) that describe all column/row headers and variable definitions. This data package consists of two main folders (1) dynamic-learning-rivers and (2) ICON-ModEx_Open_Manuscript which contain snapshots of the associated GitHub repositories. The input data, output data, and machine learning models used to guide sampling locations are within dynamic-learning-rivers. The folder is organized into five top-level directories: (1) “input_data” holds the training data for the ML models; (2) “ml_models” holds machine learning (ML) models trained on the data in “input_data”; (3) “examples” contains files for direct experimentation with the machine learning model, including scripts for setting up “hindcast” run; (4) “scripts” contains data preprocessing and postprocessing scripts and intermediate results specific to this data set that bookend the ML workflow; and (5) “output_data” holds the overall results of the ML model on that branch. Each trained ML model resides on its own branch in the repository; this means that inputs and outputs can be different branch-to-branch. There is also one hidden directory “.github/workflows”. This hidden directory contains information for how to run the ML workflow as an end-to-end automated GitHub Action but it is not needed for reusing the ML models archived here. Please see the top-level README.md in the GitHub repository for more details on the automation. The scripts and data used to create figures in the manuscript are within ICON-ModEx_Open_Manuscript. The folder is organized into four folders which contain the scripts, data, and pdf for each figure. Within the “fig-model-score-evolution” folder, there is a folder called “intermediate_branch_data” which contains some intermediate files pulled from dynamic-learning-rivers and reorganized to easily integrate into the workflows. NOTE: THIS FOLDER INCLUDES THE FILES AT THE POINT OF PAPER SUBMISSION. IT WILL BE UPDATED ONCE THE PAPER IS ACCEPTED WITH ANY REVISIONS AND WILL INCLUDE A DD/FLMD AT THAT POINT. We thank the United States Forest Service, Washington Department of Fish and Wildlife, Washington Department of Natural Resources, Cowiche Canyon Conservatory, Washington State Parks and Recreation Commission (Scientific Research Permit #210901), and the Confederated Tribes and Bands of the Yakama Nation for access to field locations where the samples labeled “SSS” were collected. We also thank the Yakama Nation Tribal Council and Yakama Nation Fisheries for working with us to facilitate sample collection and optimization of data usage according to their values and worldview. WHONDRS consortium members were asked to provide any acknowledgments for the collection of samples labeled “CM” and the following is a list of acknowledgments that were submitted with their corresponding Site IDs: (MART) Research activities were conducted in part on the Wind River Experimental Forest within the Gifford Pinchot National Forest; (MP- 100379) Philadelphia is part of Lenapehoking, the ancestral homelands of the Lenape peoples; (MP-102398) Land surveyed is the ancestral homelands of the Nookhose'iinenno (Arapaho), Tsis tsis'tas (Cheyenne), and Nuuchu (Ute); (MP-100749 and MP- 100747) Georgia Coastal Ecosystem LTER, OCE-1832178; (SP-70 and SP-72) Eastern Shoshone, Shoshone-Bannock; (MP- 102944) Funded by Oregon Watershed Enhancement Board. On the traditional lands of the Confederated Tribes of the Siletz, Confederated Tribes of the Grand Rhonde, and the Clatsop-Nehalem Confederated Tribe; (MP- 100607) Holiday Creek is located on the traditional territory of the Monacan Indian Nation; (SP-45) Lafayette Blue Springs State Park; (MP-102420) NSF DEB-2016749; (MP-100019) New Hampshire Agriculture Experiment Station; (SP-35) Rayonier (land owner; https://www.rayonier.com/); (MP- 101276) US Department of Energy, Office of Science, Biological and Environmental Research, Subsurface Biogeochemical Research, Watershed Dynamics and Evolution SFA at ORNL; (MP- 103224) Watershed Dynamics and Evolution SFA at ORNL; (MP- 101584) Traditional lands of the Oceti Sakowin (Dakota, Lakota, Nakoda) and Anishinaabe Peoples.

54 ENVIRONMENTAL SCIENCES↗

Agricultural Burning and Air Quality over Northern India: A Synergistic Analysis using NASA’s A-train Satellite Data and Ground Measurements

In recent years, New Delhi, the capital city of India, has been ranked among the most polluted cities in the world in terms of air quality related to Particulate Matter (PM). In this paper, we show that the PM 2.5 , a major component of the measure of air quality, over New Delhi is strongly impacted by the agricultural fires in the north-western Indian states of Punjab and Haryana during the post-monsoon season (October and November). Using data from NASA’s A-train sensors (MODIS, OMI, and CALIOP) in conjunction with the ground-level PM 2.5 mass concentration measured at the US Embassy site in New Delhi (2013-2015), and back-trajectory analysis, it is shown that the smoke particles produced from numerous fires in Punjab and Haryana are advected over the national capital region under the influence of north-westerly winds, thereby greatly increasing the ground-level PM 2.5 from 50 µg/m -3 before the onset of burning in early October to as high as 300 µg/m -3 (24-hour averaged, 7-day running mean) during the peak burning period in early November. Relationships between the satellite measurements of fire counts and aerosols in the crop burning region and PM 2.5 over New Delhi are found to be strongly correlated. A linear regression analysis reveals that increments in the fire counts, aerosol optical depth, UV Aerosol Index, and aerosol absorption optical depth by 100, 1.0, 1.0, and 0.1 over the burning areas result in an increase in PM 2.5 by 20, 47, 134, and 142 µg/m -3 , respectively, over New Delhi. Back-trajectory analysis shows that about 74%, 62%, and 51% of total number of daily trajectories for altitudes 10 m, 500 m, and 1500 m, respectively, intercepted the biomass burning region before arriving at the receptor location in New Delhi; this further corroborates the transport mechanism observed in the satellite data. A 15-year long record of A-train satellite measurements shows an increasing number of agricultural fires (29% higher) and aerosol loading during the second half of the record (2009-2015) compared to that during the first half (2002-2008), which is one of the major concerns for the deteriorating air quality in the region.

54 ENVIRONMENTAL SCIENCES↗

pixelvar79/ESGAN-Flowering-Detection-paper

Machine learning (ML) can accelerate biological research. However, the adoption of such tools to facilitate phenotyping based on sensor data has been limited by (i) the need for a large amount of human-annotated training data for each context in which the tool is used and (ii) phenotypes varying across contexts defined in terms of genetics and environment. This is a major bottleneck because acquiring training data is generally costly and time-consuming. This study demonstrates how a ML approach can address these challenges by minimizing the amount of human supervision needed for tool building. A case study was performed to compare ML approaches that examine images collected by an uncrewed aerial vehicle to determine the presence/absence of panicles (i.e. “heading”) across thousands of field plots containing genetically diverse breeding populations of 2 Miscanthus species. Automated analysis of aerial imagery enabled the identification of heading approximately 9 times faster than in-field visual inspection by humans. Leveraging an Efficiently Supervised Generative Adversarial Network (ESGAN) learning strategy reduced the requirement for human-annotated data by 1 to 2 orders of magnitude compared to traditional, fully supervised learning approaches. The ESGAN model learned the salient features of the data set by using thousands of unlabeled images to inform the discriminative ability of a classifier so that it required minimal human-labeled training data. This method can accelerate the phenotyping of heading date as a measure of flowering time in Miscanthus across diverse contexts (e.g. in multistate trials) and opens avenues to promote the broad adoption of ML tools.

Varela, Sebastian↗