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All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Positron emission tomography harmonization in the Alzheimer's Disease Neuroimaging Initiative: A scalable and rigorous approach to multisite amyloid and tau quantification

Abstract INTRODUCTION A key goal of the Alzheimer's Disease NeuroImaging Initiative (ADNI) positron emission tomography (PET) Core is to harmonize quantification of β‐amyloid (Aβ) and tau PET image data across multiple scanners and tracers. METHODS We developed an analysis pipeline (Berkeley PET Imaging Pipeline, B‐PIP) for ADNI Aβ and tau PET images and applied it to PET data from other multisite studies. Steps include image pre‐processing, refacing, magnetic resonance imaging (MRI)/PET co‐registration, visual quality control (QC), quantification of tracer uptake, and standardization of Aβ and tau standardized uptake value ratios (SUVrs) across tracers. RESULTS Measurements from 10,105 cross‐sectional and longitudinal Aβ and tau PET scans acquired in several studies between 2010 and 2024 can be processed, harmonized, and directly merged across tracers and cohorts. DISCUSSION The B‐PIP developed in ADNI is a scalable image harmonization approach used in several observational studies and clinical trials that facilitates rigorous Aβ and tau PET quantification and data sharing. Highlights Quantitative results from ADNI Aβ and tau PET data are generated using a rigorous, scalable image processing pipeline This pipeline has been applied to PET data from several other large, multisite studies and trials Quantitative outcomes are harmonizable across studies and are shared with the scientific community

Neurosciences & Neurology↗
DOE OSTI2025

GLBRC Soil Yearlong Incubation 13C-SIP-Lipidomics

Data package for Lipids represent a dynamic, yet stable pool of microbially-derived soil carbon This data is published under a CC0 license. The authors encourage data reuse and request attribution by referencing the below citations for the data packages and associated manuscript. Please cite as: Rempfert KR, Bell SL, Kasanke CP, Kyle JE, Hofmockel KS. 2025. GLBRC Soil Yearlong Incubation 13C-SIP-Lipidomics. [Data Set] PNNL DataHub. doi: Rempfert KR, Bell SL, Kasanke CP, Kyle JE, Hofmockel KS. 2025. MSV000097435: GLBRC soil yearlong incubation 13C-SIP-Lipidomics [Data Set] MassIVE. doi:10.25345/C57659T3K Rempfert KR, Bell SL, Kasanke CP, Kyle JE, Hofmockel KS. 2025. Lipids represent a dynamic, yet stable pool of microbially-derived soil carbon. In Prep This data package consists of compound-specific 13C SIP-lipidomics data from a yearlong tracer incubation experiment designed to investigate microbial lipid persistence in switchgrass bioenergy crop soils. In order to explore how lipid structure may modulate the persistence of C in soil lipids, we leveraged soils from two sites (Michigan - sandy texture, Wisconsin - silty texture) operated by the U.S. Department of Energy-funded Great Lakes Bioenergy Research Center (GLBRC). These sites had comparable climates, identical management practices, but contrasting soil textures, allowing us to assess the variability of lipid accrual or degradation in soils as well as provide insight regarding the degree to which edaphic properties may regulate the retention of soil lipids. Untargeted lipidomics analyses were performed to identify 13C-labeled lipids in the soil microbiome after long-term incubation. Soils were supplemented with 100 micrograms glucose per gram dry soil (99 atom % 13C or natural abundance for paired control) and incubated; samples were collected two months and one year after glucose addition. Lipid extracts (MPLEx) were analyzed by LC-MS/MS and identified using LIQUID. Calculation of isotopic enrichment of lipids was performed by targeted approach using TarMet to quantify lipid isotopologues and IsoCorrectoR to correct for natural abundance isotopes. Contents: Data package contents reported here are the first version and contain downstream analysis files for the raw LC-MS mass spectrometry files (.mzXML) deposited at the MassIVE database repository under accession MSV000097435 (80 experimental runs; 5.85 GB) | MassIVE DOI: 10.25345/C57659T3K. Support files include the additional data download 'Read Me' file containing data descriptor information. Reported data download contents are structured for compliance with project data sharing guidelines, community standards initiatives, and sponsor stakeholder policies supporting FAIR data principles. Data processing software, analysis tools, and data workflows are listed below corresponding to the host repository long-term location. Available Data Downloads (0.3 GB): "GLBRC soil yearlong incubation 13C-SIP-Lipidomics_readme.txt" - 'Read Me' data package content file (txt) "GLBRC_DataPackage_analysis files" - Data processing files (Rmd) and saved intermediate data processing outputs (rds, csv, xlsx) "GLBRC_13C_lipidomics_dataset.xlsx" - processed data in tabular format (xlsx) Linked Software: LIQUID LC-MS Analysis Software | 10.5281/zenodo.6459462 Lipid Mini-On Software Tools | 10.5281/zenodo.1492803 pmartR Omics Statistical Software | 10.5281/zenodo.6108667 xcms (v4.3.3) TarMet (v1.1.1) IsoCorrectoR (1.24.0) Funding Acknowledgments: This research was supported by an Early Career Research Program award funded by the U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research (OBER) Genomic Science program under FWP 68292, FWP 07880 and EMSL Exploratory Research Project 51095. A portion of this work was performed in the William R. Wiley Environmental Molecular Sciences Laboratory, a national scientific user facility sponsored by OBER and located at Pacific Northwest National Laboratory (PNNL). PNNL is a multi-program national laboratory operated by Battelle for the DOE under Contract DE-AC05-76RLO1830.

Rempfert, Kaitlin R [Pacific Northwest National La↗
NASA NTRS2003

Interannual Variability in Intercontinental Transport

We have investigated the importance of intercontinental transport using source-receptor relationship. A global radon-like and seven regional tracers were used in three-dimensional model simulations to quantify their contributions to column burdens and vertical profiles at world-wide receptors. Sensitivity of these contributions to meteorological input was examined using different years of meteorology in two atmospheric simulations. Results show that Asian emission influences tracer distributions in its eastern downwind regions extending as far as Europe with major contributions in mid- and upper troposphere. On the western and eastern sides of the US, Asian contribution to annual average column burdens are 37% and 5% respectively with strong monthly variations. At an altitude of 10 km, these contributions are 75% and 25% respectively. North American emissions contribute more than 15% to annual average column burden and about 50% at 8 km altitude over the European region. Contributions from tropical African emissions are wide-spread in both the hemispheres. Differences in meteorological input cause non-uniform redistribution of tracer mass throughout the troposphere at all receptors. We also show that in model-model and model-data comparison, correlation analysis of tracer's spatial gradients provides an added measure of model's performance.

Gupta, Mohan↗
NASA NTRS1993

Eddy mixing coefficient values derived from simulations with the NASA Ames Mars GCM

Values of eddy mixing coefficients, especially that for vertical mixing, are of particular importance for various photochemical models of the Mars atmosphere, which are either globally or zonally averaged. These models represent atmospheric transport processes in terms of eddy diffusion. While this is not appropriate for the advective transport by the mean meridional circulation (in general, a part of the eddy diffusion tensor actually does represent advection--a 'correction' to the Eulerian-mean circulation), it can be applied to simulate both the small- and larger-scale eddy transports of an atmospheric constituent. An effort is underway to estimate values of the eddy mixing coefficients for the Mars atmosphere using circulation data generated with the NASA Ames Mars GCM. This model simulates the three-dimensional winds in the atmosphere, and these are then used as inputs for a tracer transport model. The latter model has previously been used in interactive dust transport experiments with the Ames GCM. Idealized tracer transport experiments, with a conservative or nearly conservative hypothetical tracer, are performed to generate data from which the eddy diffusion coefficients can be estimated. Carrying out matched pairs of tracer experiments, using two very different initial states, permits all four components of the diffusion tensor to be determined. A large number of GCM experiments have been conducted, spanning a range of seasons and atmospheric dust loading, allowing the eddy mixing coefficients to be estimated for a variety of atmospheric conditions.

Barnes, J. R.↗
NASA NTRSDate not supplied

Updated assessment of TROPOMI NO2 and HCHO columns using airborne spectrometers during the MOOSE and TRACER-AQ field campaigns

Airborne spectrometer data offers the opportunity to evaluate satellite product performance without the impact of subpixel heterogeneity between the different satellite and ground-based measurement footprints. Previous measurements during the Long Island Sound Tropospheric Ozone Study were used to evaluate TROPOMI’s v1.3 NO2 product and found very strong relationships (r2=0.96) between the airborne spectrometer and TROPOMI with a systematic low bias mostly attributed to the coarse a priori profile assumption within the standard TROPOMI retrieval. This presentation will update that analysis using the most up-to-date version 2 TROPOMI NO2 product as well as expand analysis to the HCHO product. In summer 2021, NASA GeoCAPE Airborne Simulator (GCAS) collected measurements over southeast Michigan/western Ontario for the Michigan-Ontario Ozone Source Experiment (MOOSE) and Houston, Texas during the TRacking Aerosol Convection ExpeRiment – Air Quality (TRACER-AQ). Flight strategies for both deployments included repeated systematic sampling over common areas of interest coinciding with TROPOMI. During these flights, GCAS NO2 tropospheric columns are available at 250 m x 560 m resolution. Preliminary evaluation of GCAS NO2 retrievals with Pandora spectrometer data in Houston, Texas (3 sites) shows a median percent difference of 1.4% with an interquartile range of -15.5-14.9% (r2=0.72). Column HCHO was also retrieved at a slightly coarser resolution in Houston, Texas (750 m x 1680 m) showing distinct spatial patterns associated with secondary production through the oxidation of VOCs downwind of industrial facilities. Comparison to Pandora HCHO showed a low bias of ~25% (r2=0.29) with further investigation needed to identify the cause for this bias. This presentation will share how the GCAS/Pandora/TROPOMI NO2 and HCHO intercompare and will also extend analysis toward thinking about how these assets will contribute to the validation of future geostationary observations.

Laura Judd↗
DOE OSTI2023

A Novel Spatio-Temporal Regime Tracking Method for Impact Simulations

In this proposal, we present a novel method of tracking the rheological regimes activated during impact cratering events that will allow researchers to gain new insights into cratering mechanics. Rheology describes the stress-strain response of rocks to different conditions. Planetary impact cratering events often occur on too large of a scale to be feasibly captured in controlled experiments. Instead, these dynamic events are primarily studied using multi-physics codes equipped with complex material models that enable calculations of the impact event at scale. However, determining which physical processes are required for the problem of interest is challenging. Because the dominant rheological regimes change with space and time during crater formation, it is difficult to link numerical simulations with observable features of craters at the end of the event. The basis of this work is the implementation of numerical flags that track the activation of each rheological regime throughout impact simulations. We demonstrate this with the ‘Rock Model’ implemented in the CTH shock-physics code. We will use this rheology tracking method to ’zoom in’ on a specific region within an event and track the conditions the rock experiences over time. This work will develop community benchmarks to validate and distribute our implemented rheological models. We will focus on improving the melt models used by the planetary impact modeling community by developing an EOS-aware rheological transition from solid to melt. Through analysis of cell and tracer-particle based tracking data, we will study the effects of different rheologies on modeled outcomes, particularly on the volume and distributions of impacts melts. We will also use this method to link observable features with the rheological mechanisms responsible for them. The deliverables (peer-reviewed papers) from the proposed work are (i) tests of the implemented rheologic processes and demonstrations of the tracking flags; (ii) the first calculations of the spatio-temporal evolution of the dominant rheologies during impact cratering events; and (iii) application to delivery of impactor iron during basin-scale impacts.

58 GEOSCIENCES↗
NASA NTRS1975

Nuclear cardiograph and scintigraphy

Extensive advances in the technology of detectors, data analysis systems, and tracers used have resulted in greatly expanded applications of radioisotopes to the assessment of cardiac function and disease. The development of nuclear cardiology has proceeded along four lines: (1) radionuclide angiography, (2) myocardial perfusion imaging, (3) intracoronary microsphere imaging, and (4) regional myocardial blood flow determination using inert gases.

Mclaughlin, P.↗
NASA NTRS1979

Galactic distribution of Cepheids between l of approximately 294 and 331 deg

Previous observations of long-period Cepheids in the Crux-Centaurus-Circinus-Norma (CCCN) region (bounded by galactic longitudes of approximately 294 and 331 deg) are used to delineate spiral features that are consistent with available data for other spiral tracers, especially H I gas. The galactic distribution of the long-period Cepheids in the CCCN region is examined, and a possible interpretation of the spiral structure as viewed in the CCCN region is suggested. Specifically, it is concluded that: (1) the region that is often called the Centaurus link contains no Cepheids with periods longer than 11.25 days and may be part of a spiral feature characterized by older Population I material; (2) long-period Cepheids at large distances (4 kpc) are concentrated near 307 deg galactic longitude and are probably associated with the 'inner arm' identified by Kraft (1965); and (3) the velocities of the observed Cepheids differ significantly from the predictions of the Schmidt (1965) model.

Grayzeck, E. J.↗
NASA NTRS1995

Effect of the nonlinearity of the carbonate system on partial pressure of carbon dioxide in the oceans

Partial pressure of CO2 is a nonlinear function of several seawater properties. Due to the nonlinearity in this relationship, the partial pressure of a uniform ocean would be different from that of a nonuniform ocean with the same bulk seawater properties. Assuming uniformity of seawater properties at some temporal and spatial scales in carbon models leads to systematic errors in partial pressure of CO2. In this paper we evaluate the magnitude of these errors. We partition the Geochemical Ocean Sections Study and Transient Tracers in the Oceans data according to the horizontal structure of several box models from the literature. Our results suggest that assumption of uniformity at large scales leads to understanding of underestimation of global surface ocean partial pressure of CO2 by at least 3 - 12 microatm. Nonlinear effects also introduce systematic errors in the buffer factor estimated from bulk seawater properties. We find the standard deviation of partial pressure of CO2 to be an indicator of the magnitude of the nonlinear effects. We discuss the implications of these errors for some conclusions drawn from carbon models. Biogeochemical processes, such as mixing, gas exchange, or biological activity, influence the distribution of the seawater properties. A shift in spatial or temporal patterns of these processes can modify the nonuniformity of the seawater properties and thus alter the partial pressure of the surface waters, even if the mean intensities of the processes remain constant.

Trela, Piotr↗
NASA NTRS2001

GCM Simulation of the Large-scale North American Monsoon Including Water Vapor Tracer Diagnostics

The geographic sources of water for the large-scale North American monsoon in a GCM are diagnosed using passive constituent tracers of regional water'sources (Water Vapor Tracers, WVT). The NASA Data Assimilation Office Finite Volume (FV) GCM was used to produce a 10-year simulation (1984 through 1993) including observed sea surface temperature. Regional and global WVT sources were defined to delineate the surface origin of water for precipitation in and around the North American i'vionsoon. The evolution of the mean annual cycle and the interannual variations of the monsoonal circulation will be discussed. Of special concern are the relative contributions of the local source (precipitation recycling) and remote sources of water vapor to the annual cycle and the interannual variation of warm season precipitation. The relationships between soil water, surface evaporation, precipitation and precipitation recycling will be evaluated.

Bosilovich, Michael G.↗
NASA NTRS2002

GCM Simulation of the Large-Scale North American Monsoon Including Water Vapor Tracer Diagnostics

The geographic sources of water for the large scale North American monsoon in a GCM (General Circulation Model) are diagnosed using passive constituent tracers of regional water sources (Water Vapor Tracers, WVT). The NASA Data Assimilation Office Finite Volume (FV) GCM was used to produce a 10-year simulation (1984 through 1993) including observed sea surface temperature. Regional and global WVT sources were defined to delineate the surface origin of water for precipitation in and around the North American Monsoon. The evolution of the mean annual cycle and the interannual variations of the monsoonal circulation will be discussed. Of special concern are the relative contributions of the local source (precipitation recycling) and remote sources of water vapor to the annual cycle and the interannual variation of monsoonal precipitation. The relationships between soil water, surface evaporation, precipitation and precipitation recycling will be evaluated.

Bosilovich, Michael G.↗
NASA NTRS1995

Observation and modeling of compressional Pi 3 magnetic pulsations

Compressional magnetic pulsations with irregular waveforms and periods longer than 150 s (here termed Pi 3) have been studied by using data from Active Magnetospheric Particle Tracer Explorers Charge Composition Explorer (AMPTE/CCE) and GOES 5 and 6 in the dayside magnetosphere and compared with signatures on the ground at low latitudes by using data from Kakioka station (L = 1.25). On the ground, the pulsations appear in the horizontal component. A study of 17 such concurrent events during a 2-month period in 1986 reveals the following pulsation characteristics. (1) The peak-to-peak amplitudes in space (delta B(sub T)) and on the ground (delta H) are comparable and are in the range of 0.5-7 nT. (2) On the ground the pulsations can be seen at all local times, even at midnight, while at geostationary orbit they are observed only on the dayside with a clear amplitude maximum at noon. (3) The pulsations on the ground lag those observed by CCE near local noon, and the lag increases as the local time separation between CCE and the ground station increases. The time lag is 1-2 min longer when the ground station is on the nightside than when it is on the dayside. (4) The time lag between pulsations observed at geostationary orbit and near noon by CCE varies systematically with local time and is about 2 min per 6 hours of local time separation. These observations indicate that some nightside pulsations in the Pi 3 band have dayside origins. The position dependence of the pulsation amplitude can be explained well by changes in the magnetopause current, which are in turn presumably caused by changes in the solar wind dynamic pressure. The time lags observed in space are consistent with signal propagation in the MHD fast mode, but the variation in space-ground time lags with ground station local time must be attributed to another mechanism.

Matsuoka, Hitoshi↗
DOE OSTI2024

Selecting Appropriate Model Complexity: An Example of Tracer Inversion for Thermal Prediction in Enhanced Geothermal Systems

Abstract A major challenge in the inversion of subsurface parameters is the ill‐posedness issue caused by the inherent subsurface complexities and the generally spatially sparse data. Appropriate simplifications of inversion models are thus necessary to make the inversion process tractable and meanwhile preserve the predictive ability of the inversion results. In this study, we investigate the effect of model complexity on fracture aperture inversion and thermal performance prediction in a field‐scale EGS model. Principal component analysis was used to map the aperture field to a low‐dimensional latent space. The complexity of the inversion model was quantitatively represented by the percentage of total variance in the original aperture fields preserved by the latent space. Tracer, pressure and flow rate data were used to invert for fracture aperture through an ensemble‐based inversion method, and the inferred aperture field was used to predict thermal performance. With an over‐simplified aperture model, ensemble collapse occurred. The inverted aperture models failed to resolve necessary flow and transport features, leading to a biased thermal performance prediction. A complex aperture model involved excessive features and was prone to overinterpreting the inversion data. Both the tracer/pressure/flow rate data reproduction and thermal prediction showed significant uncertainties, making it difficult to properly estimate long‐term thermal performance. Fortunately, our results indicate that there exists an appropriate model complexity which can simultaneously match inversion data and predict thermal performance with an acceptable uncertainty. The quality of the fit of tracer data appears to be a useful indicator of such an appropriate model complexity.

15 GEOTHERMAL ENERGY↗
NASA NTRS1994

Statistical analysis of diffuse ion events upstream of the Earth's bow shock

A statistical study of diffuse energetic ion events and their related waves upstream of the Earth's bow shock was performed using data from the Active Magnetospheric Particle Tracer Explorers/Ion Release Module (AMPTE/IRM) satellite over two 5-month periods in 1984 and 1985. The data set was used to test the assumption in the self-consistent model of the upstream wave and particle populations by Lee (1982) that the particle acceleration through hydromagnetic waves and the wave generation are directly coupled. The comparison between the observed wave power and the wave power predicted on the observed energetic particle energy density and solar wind parameters results in a high correlation coefficient of about 0.89. The intensity of diffuse ions falls off approximately exponentially with the distance upstream from the bow shock parallel to the magnetic field with e-folding distances which vary from approximately 3.3 R(sub E) to approximately 11.7 R(sub E) over the energy range from 10 keV/e to 67.3 keV/e for both protons and alpha particles. After normalizing the upstream particle densities to zero bow shock distance by using these exponential variations, a good correlation (0.7) of the density of the diffuse ions with the solar wind density was found. This supports the suggestion that the solar wind is the source of the diffuse ions. Furthermore, the spectral slope of the diffuse ions correlates well with the solar wind velocity component in the direction of the interplanetary magnetic field (0.68 and 0.66 for protons and alpha particles) which concurs with the notion that the solar wind plays an important role in the acceleration of the upstream particles.

Trattner, K. J.↗
NASA NTRS1986

Tracer transport by the diabatic circulation deduced from satellite observations

Nimbus-7 sensor data were used to track the diabatic circulation in the stratosphere to study the advective transport of CH4 and N2O as tracer species. Advective transport by the mean circulation was found to be a function of the temperature field and associated deviations from radiative equilibrium. A photochemical model was applied to account for the disappearance of the tracer species from the stratosphere. Comparisons between the SAMS data and modeling on the basis of the chemical loss rates of the tracers and the LIMS circulation data showed that the model predictions underestimated the resident abundances, although the global distributions and circulations exhibited a good match.

Solomon, S.↗
DOE OSTI2022

TRACER-CAT-LANL Aerosol Optics and Chemical Speciation - Tracegases

Aerosol size distribution, optical properties, and speciation data collected in La Port TX, during TRACER-CAT-LANL, July 2022, with basic trace gas measurements. All sampling was conducted with an identical aerosol inlet as the standard ARM-AOS systems. The TRacking Aerosol Convection interactions ExpeRiment Carbonaceous Aerosols Thrust by Los Alamos National Laboratory (TRACER-CAT-LANL, July 2022) was designed to complement the larger ARM TRACER science goals to understand convective cloud lifecycles and aerosol-convection interactions. TRACER-CAT-LANL is focused on understanding the relationship between particle composition and light absorption and the influence of water uptake on this relationship. This aerosol and trace gas data can be used to understand the relationship between particle composition and light absorption and the influence of water uptake on this relationship. Instruments Include: Picarro GHG Photoacoustic Soot Spectrometer (PASS-3) Humidified-cavity attenuated phase shift-single scattering albedo particulate matter monitor (H-CAPS-PMSSA) Soot Particle Aerosol Mass Spectrometer (SPAMS) Single-Particle Soot Photometer (SP2) Cloud Condensation Nuclei Counter (CCNc) Aerodynamic Particle Sizer (APS) Scanning Mobility Particle Sizer (SMPS)

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

TRACER-CAT-LANL Aerosol Optics and Chemical Speciation - APS

Aerosol size distribution, optical properties, and speciation data collected in La Port TX, during TRACER-CAT-LANL, July 2022, with basic trace gas measurements. All sampling was conducted with an identical aerosol inlet as the standard ARM-AOS systems. The TRacking Aerosol Convection interactions ExpeRiment Carbonaceous Aerosols Thrust by Los Alamos National Laboratory (TRACER-CAT-LANL, July 2022) was designed to complement the larger ARM TRACER science goals to understand convective cloud lifecycles and aerosol-convection interactions. TRACER-CAT-LANL is focused on understanding the relationship between particle composition and light absorption and the influence of water uptake on this relationship. This aerosol and trace gas data can be used to understand the relationship between particle composition and light absorption and the influence of water uptake on this relationship. Instruments Include: Picarro GHG Photoacoustic Soot Spectrometer (PASS-3) Humidified-cavity attenuated phase shift-single scattering albedo particulate matter monitor (H-CAPS-PMSSA) Soot Particle Aerosol Mass Spectrometer (SPAMS) Single-Particle Soot Photometer (SP2) Cloud Condensation Nuclei Counter (CCNc) Aerodynamic Particle Sizer (APS) Scanning Mobility Particle Sizer (SMPS)

54 ENVIRONMENTAL SCIENCES↗