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At least 109 records · Page 6

Data Analysis with Graphical Models: Software Tools

Probabilistic graphical models (directed and undirected Markov fields, and combined in chain graphs) are used widely in expert systems, image processing and other areas as a framework for representing and reasoning with probabilities. They come with corresponding algorithms for performing probabilistic inference. This paper discusses an extension to these models by Spiegelhalter and Gilks, plates, used to graphically model the notion of a sample. This offers a graphical specification language for representing data analysis problems. When combined with general methods for statistical inference, this also offers a unifying framework for prototyping and/or generating data analysis algorithms from graphical specifications. This paper outlines the framework and then presents some basic tools for the task: a graphical version of the Pitman-Koopman Theorem for the exponential family, problem decomposition, and the calculation of exact Bayes factors. Other tools already developed, such as automatic differentiation, Gibbs sampling, and use of the EM algorithm, make this a broad basis for the generation of data analysis software.

Buntine, Wray L.↗

Data Collection and Analysis Software Development for Rotor Dynamics Testing in Spin Laboratory

Gas turbine engine components undergo high rotational loading another complex environmental conditions. Such operating environment leads these components to experience damages and cracks that can cause catastrophic failure during flights. There are traditional crack detections and health monitoring methodologies currently being used which rely on periodic routine maintenances, nondestructive inspections that often times involve engine and components dis-assemblies. These methods do not also offer adequate information about the faults, especially, if these faults at subsurface or not clearly evident. At NASA Glenn research center, the rotor dynamics laboratory is presently involved in developing newer techniques that are highly dependent on sensor technology to enable health monitoring and prediction of damage and cracks in rotor disks. These approaches are noninvasive and relatively economical. Spin tests are performed using a subscale test article mimicking turbine rotor disk undergoing rotational load. Non-contact instruments such as capacitive and microwave sensors are used to measure the blade tip gap displacement and blade vibrations characteristics in an attempt develop a physics based model to assess/predict the faults in the rotor disk. Data collection is a major component in this experimental-analytical procedure and as a result, an upgrade to an older version of the data acquisition software which is based on LabVIEW program has been implemented to support efficiently running tests and analyze the results. Outcomes obtained from the tests data and related experimental and analytical rotor dynamics modeling including key features of the updated software are presented and discussed.

Rotor Dynamics↗

Preliminary efforts toward development of data handling and analysis software for unsteady flow measurements: An application for aeroelastic transonic flow configurations

A few years ago the Structural Dynamics Division at LaRC started ambitious experimental research efforts known as the Benchmark Models Program. The primary objective of this program was to provide experimental data that may serve as a calibration source for computational fluid dynamics (CFD) efforts that deal with aeroelastic unsteady flow configurations. It also focuses on the understanding of complex flow phenomenon associated with unsteady flow developments. The overall plan for the program has been described by Bennett, including a presentation of initial test results of flutter of a rigid wing mounted on flexible supports. An example of a test model employed to measure the dynamic response along with corresponding pressure distributions is shown. This model incorporates eighty pressure transducers distributed along two spanwise stations. In addition, the models are equipped with four accelerometers and two strain gages. The data handling system for the Benchmark Model Program is under development. Several interactive computer routines designed for the user interface, dynamic memory allocation, unsteady flow measurements data extraction, and further data processing were developed. To present a few examples of measured data, the unsteady pressure distributions and the wing model dynamic response were plotted.

Finaish, Fathi↗

An R shiny graphical user interface for highprecision mass spectrometric data analysis

• There is currently a lack of software that meets the needs for the analysis of raw data produced by modern isotope ratio mass spectrometers for both R&D and routine use at SRNL and other US national labs • Needs to accommodate multiple isotope systems, instruments, and manufacturers • Include modern statistical methods and handling/visualization of uncertainty • Flexible software with transparent (no “black box”) and reproducible methods • This project is inspired by existing discipline-specific data analysis software (e.g., Tripoli1 , ET_Redux2, IsoplotR3) used in the geochemical community • Our goal is to build an open source data analysis software package that focuses on flexibility, transparency, and reproducibility

LABONE, ELIZABETH↗

Photometric identification of compact galaxies, stars, and quasars using multiple neural networks

We present MargNet, a deep learning-based classifier for identifying stars, quasars, and compact galaxies using photometric parameters and images from the Sloan Digital Sky Survey Data Release 16 catalogue. MargNet consists of a combination of convolutional neural network and artificial neural network architectures. Using a carefully curated data set consisting of 240 000 compact objects and an additional 150 000 faint objects, the machine learns classification directly from the data, minimizing the need for human intervention. MargNet is the first classifier focusing exclusively on compact galaxies and performs better than other methods to classify compact galaxies from stars and quasars, even at fainter magnitudes. This model and feature engineering in such deep learning architectures will provide greater success in identifying objects in the ongoing and upcoming surveys, such as Dark Energy Survey and images from the Vera C. Rubin Observatory.

79 ASTRONOMY AND ASTROPHYSICS↗

nautilus : boosting Bayesian importance nested sampling with deep learning

ABSTRACT We introduce a novel approach to boost the efficiency of the importance nested sampling (INS) technique for Bayesian posterior and evidence estimation using deep learning. Unlike rejection-based sampling methods such as vanilla nested sampling (NS) or Markov chain Monte Carlo (MCMC) algorithms, importance sampling techniques can use all likelihood evaluations for posterior and evidence estimation. However, for efficient importance sampling, one needs proposal distributions that closely mimic the posterior distributions. We show how to combine INS with deep learning via neural network regression to accomplish this task. We also introduce nautilus, a reference open-source python implementation of this technique for Bayesian posterior and evidence estimation. We compare nautilus against popular NS and MCMC packages, including emcee, dynesty, ultranest, and pocomc, on a variety of challenging synthetic problems and real-world applications in exoplanet detection, galaxy SED fitting and cosmology. In all applications, the sampling efficiency of nautilus is substantially higher than that of all other samplers, often by more than an order of magnitude. Simultaneously, nautilus delivers highly accurate results and needs fewer likelihood evaluations than all other samplers tested. We also show that nautilus has good scaling with the dimensionality of the likelihood and is easily parallelizable to many CPUs.

97 MATHEMATICS AND COMPUTING↗

Evaluating software development by analysis of changes: The data from the software engineering laboratory

An effective data collection methodology for evaluating software development methodologies was applied to four different software development projects. Goals of the data collection included characterizing changes and errors, characterizing projects and programmers, identifying effective error detection and correction techniques, and investigating ripple effects. The data collected consisted of changes (including error corrections) made to the software after code was written and baselined, but before testing began. Data collection and validation were concurrent with software development. Changes reported were verified by interviews with programmers.

Source record↗

Data reduction, management, and analysis software for CID

In an overview of the Data Reduction System, three major steps are examined. First, the raw data tapes were selected from the onboard recorders. These tapes should provide the best quality data for the data reduction software system. These tapes contained 352 channels of data, plus the monitor channels recorded in 8 bit Pulsed Coded Modulation (PCM) words. The next step consists of transcribing the PCM tapes from 8 bit serial digital data to 8 bit parallel digital data. This puts the data in the correct format for processing. The transcription process was accomplished here at LaRC in the Central Data Transportation Facility (CDTF). The last step in this 3 step process is to process the data through the reduction system developed for the Impact Dynamic Research Facility in the early part of 1980. Processing system criteria, system interface routines, and engineering units program that reads digitized data from tapes, and file management programs are discussed.

Davis, C. W.↗

Software Challenges For HL-LHC Data Analysis

The high energy physics community is discussing where investment is needed to prepare software for the HL-LHC and its unprecedented challenges. The ROOT project is one of the central software players in high energy physics since decades. From its experience and expectations, the ROOT team has distilled a comprehensive set of areas that should see research and development in the context of data analysis software, for making best use of HL-LHC's physics potential. This work shows what these areas could be, why the ROOT team believes investing in them is needed, which gains are expected, and where related work is ongoing. It can serve as an indication for future research proposals and cooperations.

Brann, Kim Albertsson↗

Image processing software for imaging spectrometry data analysis

Imaging spectrometers simultaneously collect image data in hundreds of spectral channels, from the near-UV to the IR, and can thereby provide direct surface materials identification by means resembling laboratory reflectance spectroscopy. Attention is presently given to a software system, the Spectral Analysis Manager (SPAM) for the analysis of imaging spectrometer data. SPAM requires only modest computational resources and is composed of one main routine and a set of subroutine libraries. Additions and modifications are relatively easy, and special-purpose algorithms have been incorporated that are tailored to geological applications.

Mazer, Alan↗

LANDSAT-4 image data quality analysis

Reformatting software to handle LANDSAT 5 data in quadrant format was completed and tested. The sensor two-dimensional point spread function was estimated from scene data. Budget recalculations are discussed. Two publications done under this contract are named.

Anuta, P. E.↗

Plasma and magnetospheric research

Analysis techniques and software development; data analysis and modeling; spacecraft sheath effects; laboratory plasma flow studies; and instrument development are described.

Comfort, R. H.↗

Investigation of low energy space plasma

Analysis techniques and software development, data analysis and modeling, laboratory plasma flow studies, meetings, and publications are presented.

Comfort, Richard H.↗

Application of software technology to automatic test data analysis

The verification process for a major software subsystem was partially automated as part of a feasibility demonstration. The methods employed are generally useful and applicable to other types of subsystems. The effort resulted in substantial savings in test engineer analysis time and offers a method for inclusion of automatic verification as a part of regression testing.

Stagner, J. R.↗

JPL multipolarization workstation - Hardware, software and examples of data analysis

A low-cost stand-alone interactive image processing workstation has been developed for operations on multipolarization JPL aircraft SAR data, as well as data from future spaceborne imaging radars. A recently developed data compression technique is used to reduce the data volume to 10 Mbytes, for a typical data set, so that interactive analysis may be accomplished in a timely and efficient manner on a supermicrocomputer. In addition to presenting a hardware description of the work station, attention is given to the software that has been developed. Three illustrative examples of data analysis are presented.

Burnette, Fred↗

Plasma and magnetospheric research

Research and development in plasmas and magnetospheric environments is reported. Topics discussed include: analysis and techniques of software development; data analysis and modeling; spacecraft sheath effects; laboratory plasma flow studies; instrument development.

Comfort, R. H.↗