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Spatial and temporal overlap between hatchery- and natural-origin steelhead and Chinook Salmon during spawning in the Klickitat River, Washington, USA
Abstract Objective A goal of many segregated salmonid hatchery programs is to minimize potential interbreeding between hatchery- and natural-origin fish. Our objective was to assess this on the Klickitat River, Washington, USA. Methods We used radiotelemetry to evaluate spatiotemporal spawning overlap between hatchery- and natural-origin steelhead Oncorhynchus mykiss and spring Chinook Salmon O. tshawytscha. We estimated percentages of tagged fish that spawned naturally in the Klickitat River subbasin, emigrated from the Klickitat River, or died before spawning. A kernel density analysis was used to estimate probability of spatiotemporal overlap between hatchery- and natural-origin spawners. Result For steelhead, 12% of hatchery-origin and 50% of natural-origin fish spawned naturally. For spring Chinook Salmon, 18% of hatchery-origin and 44% of natural-origin fish spawned naturally. Tag loss may result in underestimates in these percentages. Most hatchery-origin steelhead (90%) spawned downstream of river kilometer (rkm) 32, and 75% spawned from November to mid-March. The majority of natural-origin steelhead (64%) spawned upstream of rkm 32, and 75% spawned from mid-March to late May. Spawn timing of hatchery-origin Chinook Salmon (early August to mid-September) overlapped with that of natural-origin Chinook Salmon (late July to late September), and fish of both origins spawned in the same 30-km reach of the river. We estimated the percentage of hatchery-origin spawners (pHOS) on the natural spawning grounds to be 12% for steelhead and 40% for spring Chinook Salmon across all study years. For steelhead, we estimated the overlap probability to be 25% (95% CI = 22.5–28%). For spring Chinook Salmon, tight spatial clustering of hatchery-origin fish resulted in a lower overlap estimate of 21% (13–31%). Conclusion We suggest adjusting pHOS estimates using these overlap estimates or similar spatiotemporal data on actual spawner proximity and possible interactions, and that these types of analyses be used in conjunction with gene flow analysis to accurately evaluate effects of individual hatchery programs.
Recommendations for Technology Development and Validation Activities in Support of the Origins Program
The Office of Space Science (OSS) has initiated mission concept studies and associated technology roadmapping activities for future large space optical systems. The scientific motivation for these systems is the study of the origins of galaxies, stars, planetary systems and, ultimately, life. Collectively, these studies are part of the 'Astronomical Search for Origins and Planetary Systems Program' or 'Origins Program'. A series of at least three science missions and associated technology validation flights is currently envisioned in the time frame between the year 1999 and approximately 2020. These would be the Space Interferometry Mission (SIM), a 10-meter baseline Michelson stellar interferometer; the Next Generation Space Telescope (NGST), a space-based infrared optimized telescope with aperture diameter larger than four meters; and the Terrestrial Planet Finder (TPF), an 80-meter baseline-nulling Michelson interferometer described in the Exploration of Neighboring Planetary Systems (ExNPS) Study. While all of these missions include significant technological challenges, preliminary studies indicate that the technological requirements are achievable. However, immediate and aggressive technology development is needed. The Office of Space Access and Technology (OSAT) is the primary sponsor of NASA-unique technology for missions such as the Origins series. For some time, the OSAT Space Technology Program has been developing technologies for large space optical systems, including both interferometers and large-aperture telescopes. In addition, technology investments have been made by other NASA programs, including OSS; other government agencies, particularly the Department of Defense; and by the aerospace industrial community. This basis of prior technology investment provides much of the rationale for confidence in the feasibility of the advanced Origins missions. In response to the enhanced interest of both the user community and senior NASA management in large space optics, OSAT is moving to improve the focus of its sensor, spacecraft, and interferometer/telescope technology programs on the specific additional needs of the OSS Origins Program. To better define Origins mission technology and facilitate its development, OSAT and OSS called for a series of workshops with broad participation from industry, academia and the national laboratory community to address these issues. Responsibility for workshop implementation was assigned jointly to the two NASA field centers with primary Origins mission responsibility, the Goddard Space Flight Center and the Jet Propulsion Laboratory. The Origins Technology Workshop, held at Dana Point, California between June 4 and 6, 1996 was the first in the series of comprehensive workshops aimed at addressing the broad technological needs of the Origins Program. It was attended by 64 individuals selected to provide technical expertise relevant to the technology challenges of the Origins missions. This report summarizes the results of that meeting. A higher level executive summary was considered inappropriate because of the potential loss of important context for the recommendations. Subsequent to the Origins Technology Workshop and prior to publication of this report, NASA Headquarters reorganized the activities of the Of fice of Space Access and Technology. It appears likely that responsibility for the technology programs recommended in this document will move to the Office of Space Science.
Estimating IDP Origins Using ACLED Political Violence Events: Validation with Lebanon IDP Flow Data
A key input in modeling population distribution and flows following conflict events is the inclusion of Internally Displaced Person (IDP) flows between administrative units within a country. These flows are critical for capturing population movement and redistribution driven by current events, particularly conflict. In some cases, IDP destination data are available while origin data is incomplete or unavailable. This creates a gap in understanding where displacement is occurring, limiting the ability to model population redistribution accurately. Without origin data, it is not possible to reallocate population flows or accurately represent where displacement is occurring within the country. This report evaluates whether Armed Conflict Location Event Data (ACLED) political violence event data can be used to estimate IDP origin distributions when direct origin data are unavailable. The approach is validated using historical IDP flow data from Lebanon, where both origins and destinations are observed. Results show that ACLED event distributions strongly correspond to observed IDP-origin patterns, particularly when using cumulative 60-day event windows. The method is most reliable for identifying major origin districts and approximating proportional origin shares. However, it is not intended to reconstruct exact individual displacement flows, but rather to provide a probabilistic spatial allocation of displacement origins.
A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land
BACKGROUND: The timescale of prokaryote evolution has been difficult to reconstruct because of a limited fossil record and complexities associated with molecular clocks and deep divergences. However, the relatively large number of genome sequences currently available has provided a better opportunity to control for potential biases such as horizontal gene transfer and rate differences among lineages. We assembled a data set of sequences from 32 proteins (approximately 7600 amino acids) common to 72 species and estimated phylogenetic relationships and divergence times with a local clock method. RESULTS: Our phylogenetic results support most of the currently recognized higher-level groupings of prokaryotes. Of particular interest is a well-supported group of three major lineages of eubacteria (Actinobacteria, Deinococcus, and Cyanobacteria) that we call Terrabacteria and associate with an early colonization of land. Divergence time estimates for the major groups of eubacteria are between 2.5-3.2 billion years ago (Ga) while those for archaebacteria are mostly between 3.1-4.1 Ga. The time estimates suggest a Hadean origin of life (prior to 4.1 Ga), an early origin of methanogenesis (3.8-4.1 Ga), an origin of anaerobic methanotrophy after 3.1 Ga, an origin of phototrophy prior to 3.2 Ga, an early colonization of land 2.8-3.1 Ga, and an origin of aerobic methanotrophy 2.5-2.8 Ga. CONCLUSIONS: Our early time estimates for methanogenesis support the consideration of methane, in addition to carbon dioxide, as a greenhouse gas responsible for the early warming of the Earths' surface. Our divergence times for the origin of anaerobic methanotrophy are compatible with highly depleted carbon isotopic values found in rocks dated 2.8-2.6 Ga. An early origin of phototrophy is consistent with the earliest bacterial mats and structures identified as stromatolites, but a 2.6 Ga origin of cyanobacteria suggests that those Archean structures, if biologically produced, were made by anoxygenic photosynthesizers. The resistance to desiccation of Terrabacteria and their elaboration of photoprotective compounds suggests that the common ancestor of this group inhabited land. If true, then oxygenic photosynthesis may owe its origin to terrestrial adaptations.
Origin of replication discovery for environmentally isolated Pantoea strain enables expression of heterologous proteins, pathways and products
Leveraging predicted origin sequences from a previously characterized groundwater plasmidome, we constructed a barcoded plasmid library to screen for previously unknown origins. Testing this library against a panel of representative bacterial strains led to the identification of 3 previously unknown origins that replicate in gram-negative bacteria not previously associated with these origin sequences. Experimental validation confirmed that a plasmid bearing origin 6911 as the sole origin could replicate with a copy number of 9 (±2) in Pantoea sp. MT58, a fast growing and metal tolerant, environmentally important bacterium. Plasmids based on this new origin were used to express the reporter protein GFP, and non-native metabolite pathways for the natural product indigoidine and the terpenoid compound isoprenol. Functional previously unknown origins of replication in such non-model organisms can expand the toolkit for genetic manipulations of both model and less-studied bacteria.
Estimates of the maximum time required to originate life
Fossils of the oldest microorganisms exist in 3.5 billion year old rocks and there is indirect evidence that life may have existed 3.8 billion years ago (3.8 Ga). Impacts able to destroy life or interrupt prebiotic chemistry may have occurred after 3.5 Ga. If large impactors vaporized the oceans, sterilized the planets, and interfered with the origination of life, life must have originated in the time interval between these impacts which increased with geologic time. Therefore, the maximum time required for the origination of life is the time that occurred between sterilizing impacts just before 3.8 Ga or 3.5 Ga, depending upon when life first appeared on earth. If life first originated 3.5 Ga, and impacts with kinetic energies between 2 x 10 the the 34th and 2 x 10 to the 35th were able to vaporize the oceans, using the most probable impact flux, it is found that the maximum time required to originate life would have been 67 to 133 million years (My). If life originated 3.8 Ga, the maximum time to originate life was 2.5 to 11 My. Using a more conservative estimate for the flux of impacting objects before 3.8 Ga, a maximum time of 25 My was found for the same range of impactor kinetic energies. The impact model suggests that it is possible that life may have originated more than once.
The Origins Space Telescope
The Origins Space Telescope will trace the history of our origins from the time dust and heavy elements permanently altered the cosmic landscape to present-day life. How did galaxies evolve from the earliest galactic systems to those found in the universe today? How do habitable planets form? How common are life-bearing worlds? To answer these alluring questions, Origins will operate at mid- and far-infrared wavelengths and offer powerful spectroscopic instruments and sensitivity three orders of magnitude better than that of Herschel, the largest telescope flown in space to date. After a 3 ½ year study, the Origins Science and Technology Definition Team will recommend to the Decadal Survey a concept for Origins with a 5.9-m diameter telescope cryo cooled to 4.5 K and equipped with three scientific instruments. A mid-infrared instrument (MISC-T) will measure the spectra of transiting exoplanets in the 2.8 – 20 μm wavelength range and offer unprecedented sensitivity, enabling definitive biosignature detections. The Far-IR Imager Polarimeter (FIP) will be able to survey thousands of square degrees with broadband imaging at 50 and 250 μm. The Origins Survey Spectrometer (OSS) will cover wavelengths from 25 – 588 μm, make wide-area and deep spectroscopic surveys with spectral resolving power R ~ 300, and pointed observations at R ~ 40,000 and 300,000 with selectable instrument modes. Origins was designed to minimize complexity. The telescope has a Spitzer-like architecture and requires very few deployments after launch. The cryo-thermal system design leverages JWST technology and experience. A combination of current-state-of-the-art cryocoolers and next-generation detector technology will enable Origins’ natural background limited sensitivity.
The Origins Space Telescope: Baseline Mission Concept
The Origins Space Telescope will trace the history of our origins from the time dust and heavy elements permanently altered the cosmic landscape to present-day life. How did galaxies evolve from the earliest galactic systems to those found in the Universe today? How do habitable planets form? How common are life-bearing worlds? To answer these alluring questions, Origins will operate atmid- and far-infrared (IR) wavelengths and offer powerful spectroscopic instruments and sensitivity three orders of magnitude better than that of the Herschel Space Observatory, the largest telescope flown in space to date. We describe the baseline concept for Origins recommended to the 2020 US Decadal Survey in Astronomy and Astrophysics. The baseline design includes a 5.9-m diameter telescope cryocooled to 4.5 K and equipped with three scientific instruments. A mid-infrared instrument (Mid-Infrared Spectrometer and Camera Transit spectrometer) will measure the spectra of transiting exoplanets in the 2.8 to 20 μm wavelength range and offer unprecedented spectrophotometric precision, enabling definitive exoplanet biosignature detections. The far-IR imager polarimeter will be able to survey thousands of square degrees with broadband imaging at 50 and 250 μm. The Origins Survey Spectrometer will cover wavelengths from 25 to 588 μm, making wide-area and deep spectroscopic surveys with spectral resolving power R ∼ 300, and pointed observations at R ∼ 40;000 and 300,000 with selectable instrument modes. Origins was designed to minimize complexity. The architecture is similar to that of the Spitzer Space Telescope and requires very few deployments after launch, while the cryothermal system design leverages James Webb Space Telescope technology and experience. A combination of current-state-of-the-art cryocoolers and next-generation detector technology will enable Origins’ natural background-limited sensitivity.
Genome Replication in Thermococcus kodakarensis Independent of Cdc6 and an Origin of Replication
The initiation of DNA replication is typically tightly regulated by proteins that form initiation complexes at specific sequences known as replication origins. In Archaea and Eukaryotes, Cdc6, a near-universally conserved protein binds and facilitates the origin-dependent assembly of the replicative apparatus. TK1901 encodes Cdc6 in Thermococcus kodakarensis but, as we report here, TK1901 and the presumed origin of replication can be deleted from the genome of this hyperthermophilic Archaeon without any detectable effects on growth, genetic competence or the ability to support autonomous plasmid replication. All regions of the genome were equally represented in the sequences generated by whole genome sequencing of DNA isolated from T. kodakarensis strains with or without TK1901, inconsistent with DNA initiation occurring at one or few origins, and instead suggestive of replication initiating at many sites distributed throughout the genome. We were unable to generate strains lacking the recombination factors, RadA or RadB, consistent with T. kodakarensis cells, that are oligoploid (7–19 genomes per cell), employing a recombination-based mechanism of DNA replication. Deletion of the previously presumed origin region reduced the long-term viability of cultures supporting the possibility that retaining an origin-based mechanism of DNA initiation provides a survival mechanism for stationary phase cells with only one genome.
Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin
Abstract Background Plants have developed defense strategies for phytopathogen and herbivore protection via coordinated metabolic mechanisms. Low-molecular weight metabolites produced within plant tissues, such as salicylic acid, represent one such mechanism which likely mediates plant – microbe interactions above and below ground. Salicylic acid is a ubiquitous phytohormone at low levels in most plants, yet are concentrated defense compounds in Populus , likely acting as a selective filter for rhizosphere microbiomes. We propagated twelve Populus trichocarpa genotypes which varied an order of magnitude in salicylic acid (SA)-related secondary metabolites, in contrasting soils from two different origins. After four months of growth, plant properties (leaf growth, chlorophyll content, and net photosynthetic rate) and plant root metabolomics specifically targeting SA metabolites were measured via GC-MS. In addition, rhizosphere microbiome composition was measured via Illumina MiSeq sequencing of 16S and ITS2 rRNA-genes. Results Soil origin was the primary filter causing divergence in bacterial/archaeal and fungal communities with plant genotype secondarily influential. Both bacterial/archaeal and fungal evenness varied between soil origins and bacterial/archaeal diversity and evenness correlated with at least one SA metabolite (diversity: populin; evenness: total phenolics). The production of individual salicylic acid derivatives that varied by host genotype resulted in compositional differences for bacteria /archaea (tremuloidin) and fungi (salicylic acid) within one soil origin (Clatskanie) whereas soils from Corvallis did not illicit microbial compositional changes due to salicylic acid derivatives. Several dominant bacterial (e.g., Betaproteobacteria, Acidobacteria, Verrucomicrobia, Chloroflexi, Gemmatimonadete, Firmicutes ) and one fungal phyla ( Mortierellomycota ) also correlated with specific SA secondary metabolites; bacterial phyla exhibited more negative interactions (declining abundance with increasing metabolite concentration) than positive interactions. Conclusions These results indicate microbial communities diverge most among soil origin. However, within a soil origin, bacterial/archaeal communities are responsive to plant SA production within greenhouse-based rhizosphere microbiomes. Fungal microbiomes are impacted by root SA-metabolites, but overall to a lesser degree within this experimental context. These results suggest plant defense strategies, such as SA and its secondary metabolites, may partially drive patterns of both bacterial/archaeal and fungal taxa-specific colonization and assembly.
Optical Design of the Origins Space Telescope
This paper discusses the optical design of the Origins Space Telescope. Origins is one of four large missions under study in preparation for the 2020 Decadal Survey in Astronomy and Astrophysics. Sensitive to the mid- and far-infrared spectrum (between 2.8 and 588 μm), Origins sets out to answer a number of important scientific questions by addressing NASA’s three key science goals in astrophysics. The Origins telescope has a 5.9 m diameter primary mirror and operates at f/14. The large on-axis primary consists of 18 ‘keystone’ segments of two different prescriptions arranged in two annuli (six inner and twelve outer segments) that together form a circular aperture in the goal of achieving a symmetric point spread function. To accommodate the 46 x 15 arcminute full field of view of the telescope at the design wavelength of λ = 30 μm, a three-mirror anastigmat configuration is used. The design is diffraction-limited across its instruments’ fields of view. A brief discussion of each of the three baselined instruments within the Instrument Accommodation Module (IAM) is presented: 1) Origins Survey Spectrometer (OSS), 2) Mid-infrared Spectrometer, Camera (MISC) transit spectrometer channel, and 3) Far-Infrared Polarimeter/Imager (FIP). In addition, the up scope options for the observatory are laid out as well including a fourth instrument: the Heterodyne Receiver for Origins (HERO).
Optical Design of the Origins Space Telescope
The optical design is presented for the Origins Space Telescope, one of four large missions under study in preparation for the 2020 Decadal Survey in Astronomy and Astrophysics is presented. Sensitive to the mid- and far-infrared spectrum (between 2.8 and 588 µm) and set to launch in approximately 2035, Origins sets out to answer a number of important scientific questions by addressing NASA's three key science goals in astrophysics: How does the universe work?, How did we get here, and Are we alone? To do so, Origins seeks to answer three main questions: 1) How do galaxies form stars, build up metals, and grow their central supermassive black holes from reionization to today? 2) How do the conditions for habitability develop during the process of planet formation? 3) Do planets orbiting M-dwarf stars support life?The Origins telescope has a 5.9 m diameter primary mirror and operates at f/14. The large on-axis primary consists of 18 'keystone' segments of two different prescriptions arranged in two annuli (six inner and twelve outer segments) that together form a circular aperture in the goal of achieving a symmetric point spread function. To simplify the design, the telescope will be launched with both the primary mirror segments and the secondary mirror already deployed. To accommodate the 46 x 15 arcminute full field of view of the telescope at the design wavelength of = 30 µm, a three-mirror anastigmat configuration is used. The design is diffraction-limited across its instruments' fields of view. A brief discussion of each of the three baselined instruments within the Instrument Accommodation Module (IAM) is presented: 1) Origins Survey Spectrometer (OSS), 2) Mid-infrared Spectrometer, Camera (MISC) transit spectrometer channel, and 3) Far-Infrared Polarimeter/Imager (FIP). In addition, the upscope options for the observatory are laid out as well, including a fourth instrument: the Heterodyne Receiver for Origins (HERO).
Optical Design of the Origins Space Telescope
This paper discusses the optical design of the Origins Space Telescope. Origins is one of four large missions under study in preparation for the 2020 Decadal Survey in Astronomy and Astrophysics. Sensitive to the mid- and far-infrared spectrum (between 2.8 and 588 μm), Origins sets out to answer a number of important scientific questions by addressing NASA’s three key science goals in astrophysics. The Origins telescope has a 5.9 m diameter primary mirror and operates at f/14. The large on-axis primary consists of 18 ‘keystone’ segments of two different prescriptions arranged in two annuli (six inner and twelve outer segments) that together form a circular aperture in the goal of achieving a symmetric point spread function. To accommodate the 46 x 15 arcminute full field of view of the telescope at the design wavelength of λ = 30 μm, a three-mirror anastigmat configuration is used. The design is diffraction-limited across its instruments’ fields of view. A brief discussion of each of the three baselined instruments within the Instrument Accommodation Module (IAM) is presented: 1) Origins Survey Spectrometer (OSS), 2) Mid-infrared Spectrometer, Camera (MISC) transit spectrometer channel, and 3) Far-Infrared Polarimeter/Imager (FIP). In addition, the upscope options for the observatory are laid out as well including a fourth instrument: the Heterodyne Receiver for Origins (HERO).
Blood cadmium by race/hispanic origin: The role of smoking
Background: There have been increasing concerns over health effects of low level exposure to cadmium, especially those on bones and kidneys. Objective: To explore how age-adjusted geometric means of blood cadmium in adults varied by race/Hispanic origin, sex, and smoking status among U.S. adults and the extent to which the difference in blood cadmium by race/Hispanic origin and sex may be explained by intensity of smoking, a known major source of cadmium exposure. Methods: Our sample included 7,368 adults from National Health and Nutrition Examination Survey (NHANES) 2011–2014. With direct age adjustment, geometric means of blood cadmium and number of cigarettes smoked per day were estimated for subgroups defined by race/Hispanic origin, smoking status, and sex using interval regression, which allows mean estimation in the presence of left- and right-censoring. Results: Among never and former smoking men and women, blood cadmium tended to be higher for non-Hispanic Asian adults than adults of other race/Hispanic origin. Among current smokers, who generally had higher blood cadmium than never and former smokers, non-Hispanic white, black, and Asian adults had similarly elevated blood cadmium compared to Hispanic adults. A separate analysis revealed that non-Hispanic white adults tended to have the highest smoking intensity regardless of sex, than adults of the other race/Hispanic origin groups. Conclusions: The observed pattern provided evidence for smoking as a major source of cadmium exposure, yet factors other than smoking also appeared to contribute to higher blood cadmium of non-Hispanic Asian adults. - Highlights: • Among never and former smoking adults, Asians have the highest blood cadmium. • White adults tend to have the highest smoking intensity, but not blood cadmium. • Women overall have higher levels of blood cadmium than men regardless of smoking. • Non-smoking sources of exposure likely contribute to Asians’ higher blood cadmium.
Air Mass Origin in the Arctic and its Response to Future Warming
We present the first climatology of air mass origin in the Arctic in terms of rigorously defined air mass fractions that partition air according to where it last contacted the planetary boundary layer (PBL). Results from a present-day climate integration of the GEOSCCM general circulation model reveal that the Arctic lower troposphere below 700 mb is dominated year round by air whose last PBL contact occurred poleward of 60degN, (Arctic air, or air of Arctic origin). By comparison, approx. 63% of the Arctic troposphere above 700 mb originates in the NH midlatitude PBL, (midlatitude air). Although seasonal changes in the total fraction of midlatitude air are small, there are dramatic changes in where that air last contacted the PBL, especially above 700 mb. Specifically, during winter air in the Arctic originates preferentially over the oceans, approx. 26% in the East Pacific, and approx. 20% in the Atlantic PBL. By comparison, during summer air in the Arctic last contacted the midlatitude PBL primarily over land, overwhelmingly so in Asia (approx. 40 %) and, to a lesser extent, in North America (approx. 24%). Seasonal changes in air-mass origin are interpreted in terms of seasonal variations in the large-scale ventilation of the midlatitude boundary layer and lower troposphere, namely changes in the midlatitude tropospheric jet and associated transient eddies during winter and large scale convective motions over midlatitudes during summer.
The Origins Space Telescope Integration and Testing
This paper describes the plans, flows, key facilities, test beds, pathfinders, simulators and ground support equipment that could be used to fully integrate, functionally test and qualify the Origins Space Telescope (Origins). The Origins Observatory consists of the Spacecraft Bus Module (SBM) and the Cryogenic Payload Module (CPM), which comprises the telescope and three science instruments. The telescope is a Three Mirror Anastigmat (TMA) and is composed of four mirrors: three with optical power (the elliptical primary, hyperbolic secondary, and elliptical tertiary mirrors) and a flat field-steering mirror (FSM). The three science instruments spanning the wavelength range 2.8 to 588 μm provide the powerful new spectroscopic and imaging capabilities required to achieve the scientific objectives. The Origins Survey Spectrometer (OSS) uses six gratings in parallel to take multi-beam spectra simultaneously across the 25 to 588 μm window through long slits enabling deep 3D extra-galactic surveys. The Far-IR Imager/Polarimeter (FIP) provides imaging and polarimetric measurement capabilities at 50 and 250 μm. Its fast mapping enables rapid follow-up of transient or variable sources and efficient monitoring campaigns. The Mid-Infrared Spectrometer (MISC-T) provides spectroscopy simultaneously over 2.8 to 20 μm with exquisite stability and precision (<5 ppm between 2.8 to 10 μm, <20 ppm between 11 to 20 μm). All the instruments are delivered for Integration and Test fully qualified and calibrated. The Integration and Test program implemented at each level of assembly is discussed as well as the separation of thermal vacuum testing between the hot and cold zones of the Observatory. Portions of this manuscript appear in the Origins Study Final Report.
A New Estimator to Correct for Bias from Tag Rate Expansion on Natural-Origin Fish Attributes in Mixed-Stock Analysis Using Parentage-Based Tagging
Abstract In fisheries where hatchery- and natural-origin conspecifics occur as mixed stocks, it is often important to estimate both the natural-origin proportion of the mixture and the composition of attributes within the natural-origin portion (e.g., genetic stock, sex, and age-class). These estimates are facilitated by parentage-based tagging, which allows large numbers of hatchery fish to be efficiently tagged and later identified. When tag rates are less than 100%, the untagged fish in the mixture include both untagged hatchery fish and natural-origin fish. Unbiased estimation of the abundance and attribute composition of the natural-origin portion requires an estimator that accounts for tag rates. Two estimators are described: one “accounting-style” estimator similar to previously described approaches and one maximum likelihood method. These estimators were evaluated and compared using simulations mimicking estimation of the composition of fish migrating past a dam. The two estimators performed similarly at reducing bias when tag rates were high, but the maximum likelihood method had smaller mean square error when tag rates were low. We provide an R package to allow usage of this estimator in a wide variety of fisheries applications.