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Machine learning model inputs, outputs, and scripts associated with “Artificial intelligence-guided iterations between observations and modeling significantly improve environmental predictions”

NOTE: The manuscript associated with this data package is currently in review. The data may be revised based on reviewer feedback. Upon manuscript acceptance, this data package will be updated with the final dataset and additional metadata. This data package is associated with the manuscript “Artificial intelligence-guided iterations between observations and modeling significantly improve environmental predictions” (Malhotra et al., in prep). This effort was designed following ICON (integrated, coordinated, open, and networked) principles to facilitate a model-experiment (ModEx) iteration approach, leveraging crowdsourced sampling across the contiguous United States (CONUS). New machine learning models were created every month to guide sampling locations. Data from the resulting samples were used to test and rebuild the machine learning models for the next round of sampling guidance. Associated sediment and water geochemistry and in situ sensor data can be found at https://data.ess-dive.lbl.gov/datasets/doi:10.15485/1923689, https://data.ess-dive.lbl.gov/datasets/doi:10.15485/1729719, and https://data.ess-dive.lbl.gov/datasets/doi:10.15485/1603775. This data package is associated with two GitHub repositories found at https://github.com/parallelworks/dynamic-learning-rivers and https://github.com/WHONDRS-Hub/ICON-ModEx_Open_Manuscript. In addition to this readme, this data package also includes two file-level metadata (FLMD) files that describes each file and two data dictionaries (DD) that describe all column/row headers and variable definitions. This data package consists of two main folders (1) dynamic-learning-rivers and (2) ICON-ModEx_Open_Manuscript which contain snapshots of the associated GitHub repositories. The input data, output data, and machine learning models used to guide sampling locations are within dynamic-learning-rivers. The folder is organized into five top-level directories: (1) “input_data” holds the training data for the ML models; (2) “ml_models” holds machine learning (ML) models trained on the data in “input_data”; (3) “examples” contains files for direct experimentation with the machine learning model, including scripts for setting up “hindcast” run; (4) “scripts” contains data preprocessing and postprocessing scripts and intermediate results specific to this data set that bookend the ML workflow; and (5) “output_data” holds the overall results of the ML model on that branch. Each trained ML model resides on its own branch in the repository; this means that inputs and outputs can be different branch-to-branch. There is also one hidden directory “.github/workflows”. This hidden directory contains information for how to run the ML workflow as an end-to-end automated GitHub Action but it is not needed for reusing the ML models archived here. Please see the top-level README.md in the GitHub repository for more details on the automation. The scripts and data used to create figures in the manuscript are within ICON-ModEx_Open_Manuscript. The folder is organized into four folders which contain the scripts, data, and pdf for each figure. Within the “fig-model-score-evolution” folder, there is a folder called “intermediate_branch_data” which contains some intermediate files pulled from dynamic-learning-rivers and reorganized to easily integrate into the workflows. NOTE: THIS FOLDER INCLUDES THE FILES AT THE POINT OF PAPER SUBMISSION. IT WILL BE UPDATED ONCE THE PAPER IS ACCEPTED WITH ANY REVISIONS AND WILL INCLUDE A DD/FLMD AT THAT POINT. We thank the United States Forest Service, Washington Department of Fish and Wildlife, Washington Department of Natural Resources, Cowiche Canyon Conservatory, Washington State Parks and Recreation Commission (Scientific Research Permit #210901), and the Confederated Tribes and Bands of the Yakama Nation for access to field locations where the samples labeled “SSS” were collected. We also thank the Yakama Nation Tribal Council and Yakama Nation Fisheries for working with us to facilitate sample collection and optimization of data usage according to their values and worldview. WHONDRS consortium members were asked to provide any acknowledgments for the collection of samples labeled “CM” and the following is a list of acknowledgments that were submitted with their corresponding Site IDs: (MART) Research activities were conducted in part on the Wind River Experimental Forest within the Gifford Pinchot National Forest; (MP- 100379) Philadelphia is part of Lenapehoking, the ancestral homelands of the Lenape peoples; (MP-102398) Land surveyed is the ancestral homelands of the Nookhose'iinenno (Arapaho), Tsis tsis'tas (Cheyenne), and Nuuchu (Ute); (MP-100749 and MP- 100747) Georgia Coastal Ecosystem LTER, OCE-1832178; (SP-70 and SP-72) Eastern Shoshone, Shoshone-Bannock; (MP- 102944) Funded by Oregon Watershed Enhancement Board. On the traditional lands of the Confederated Tribes of the Siletz, Confederated Tribes of the Grand Rhonde, and the Clatsop-Nehalem Confederated Tribe; (MP- 100607) Holiday Creek is located on the traditional territory of the Monacan Indian Nation; (SP-45) Lafayette Blue Springs State Park; (MP-102420) NSF DEB-2016749; (MP-100019) New Hampshire Agriculture Experiment Station; (SP-35) Rayonier (land owner; https://www.rayonier.com/); (MP- 101276) US Department of Energy, Office of Science, Biological and Environmental Research, Subsurface Biogeochemical Research, Watershed Dynamics and Evolution SFA at ORNL; (MP- 103224) Watershed Dynamics and Evolution SFA at ORNL; (MP- 101584) Traditional lands of the Oceti Sakowin (Dakota, Lakota, Nakoda) and Anishinaabe Peoples.

54 ENVIRONMENTAL SCIENCES↗

The Annual Glaciohydrology Cycle in the Ablation Zone of the Greenland Ice Sheet: Part 2. Observed and Modeled Ice Flow

Ice velocities observed in 2005/06 at three GPS stations along the Sermeq Avannarleq flowline, West Greenland, are used to characterize an observed annual velocity cycle. We attempt to reproduce this annual ice velocity cycle using a 1-D ice-flow model with longitudinal stresses coupled to a 1-D hydrology model that governs an empirical basal sliding rule. Seasonal basal sliding velocity is parameterized as a perturbation of prescribed winter sliding velocity that is proportional to the rate of change of glacier water storage. The coupled model reproduces the broad features of the annual basal sliding cycle observed along this flowline, namely a summer speed-up event followed by a fall slowdown event. We also evaluate the hypothesis that the observed annual velocity cycle is due to the annual calving cycle at the terminus. We demonstrate that the ice acceleration due to a catastrophic calving event takes an order of magnitude longer to reach CU/ETH ('Swiss') Camp (46km upstream of the terminus) than is observed. The seasonal acceleration observed at Swiss Camp is therefore unlikely to be the result of velocity perturbations propagated upstream via longitudinal coupling. Instead we interpret this velocity cycle to reflect the local history of glacier water balance.

ice flow↗

Use of Machine Learning Techniques for Iidentification of Robust Teleconnections to East African Rainfall Variability in Observations and Models

Providing advance warning of East African rainfall variations is a particular focus of several groups including those participating in the Famine Early Warming Systems Network. Both seasonal and long-term model projections of climate variability are being used to examine the societal impacts of hydrometeorological variability on seasonal to interannual and longer time scales. The NASA / USAID SERVIR project, which leverages satellite and modeling-based resources for environmental decision making in developing nations, is focusing on the evaluation of both seasonal and climate model projections to develop downscaled scenarios for using in impact modeling. The utility of these projections is reliant on the ability of current models to capture the embedded relationships between East African rainfall and evolving forcing within the coupled ocean-atmosphere-land climate system. Previous studies have posited relationships between variations in El Niño, the Walker circulation, Pacific decadal variability (PDV), and anthropogenic forcing. This study applies machine learning methods (e.g. clustering, probabilistic graphical model, nonlinear PCA) to observational datasets in an attempt to expose the importance of local and remote forcing mechanisms of East African rainfall variability. The ability of the NASA Goddard Earth Observing System (GEOS5) coupled model to capture the associated relationships will be evaluated using Coupled Model Intercomparison Project Phase 5 (CMIP5) simulations.

Roberts, J. Brent↗

Nonthermal Linewidths from Serts: Implications for Coronal Heating Models

Observations from Solar Extreme-ultraviolet Research Telescope and Spectrograph (SERTS) are used to determine the nonthermal velocity in the corona for active and quiet Sun regions in 1991 and 1993. A nonthermal velocity of 20-30 km/s is obtained in all solar structures observed at both observing times. These observations can be used to constrain coronal heating models. The idea that magnetic reconnection could provide energy to heat the non-transient corona is not supported by the data.

Davila, Joseph M.↗

Atmospheric teleconnection associated with the Atlantic multidecadal variability in summer: assessment of the CESM1 model

Observational analysis shows that the Atlantic multidecadal variability (AMV) is associated with climate variability in the Northern Hemisphere through a zonal atmospheric teleconnection extending from the North Atlantic Ocean and propagating eastward around the Northern Hemisphere. Here, we studied the fidelity of model simulations in reproducing the observed summer AMV and the associated impacts on the mid-latitude climate by analysing simulations using the National Centre for Atmospheric Research Community Earth System Model Version 1 (CESM1), including CESM1 North Atlantic idealized and pacemaker simulations, CESM1 large ensemble twentieth century uninitialized simulations and large ensemble initialized CESM1 decadal predictions. To further compare the fidelity of CESM1, we also analysed large ensemble simulations from three other models. Our results suggest that the uninitialized large ensemble simulations from all models can produce an AMV time evolution and its regional climate impacts similar to the observations to certain degree. By initializing the observed oceanic condition in decadal prediction simulations, the simulated AMV and its regional impacts are closer to the observed ones than those in uninitialized ensemble simulations. In addition, the pacemaker simulations that nudged the time-evolving observed North Atlantic sea surface temperature anomalies produce spatiotemporal characteristics of the AMV and AMV climate impacts closer to the observed ones than the uninitialized simulations. We conclude that although coupled models can produce AMV and its regional impacts similar to observed, proper initialization and bias correction of the sea surface temperature spatial and temporal structure can improve this capability.

Initialization↗

The effect of latent heat release on synoptic-to-planetary wave interactions and its implication for satellite observations: Theoretical modeling

The project objectives are to develop process models to investigate the interaction of planetary and synoptic-scale waves including the effects of latent heat release (precipitation), nonlinear dynamics, physical and boundary-layer processes, and large-scale topography; to determine the importance of latent heat release for temporal variability and time-mean behavior of planetary and synoptic-scale waves; to compare the model results with available observations of planetary and synoptic wave variability; and to assess the implications of the results for monitoring precipitation in oceanic-storm tracks by satellite observing systems. Researchers have utilized two different models for this project: a two-level quasi-geostrophic model to study intraseasonal variability, anomalous circulations and the seasonal cycle, and a 10-level, multi-wave primitive equation model to validate the two-level Q-G model and examine effects of convection, surface processes, and spherical geometry. It explicitly resolves several planetary and synoptic waves and includes specific humidity (as a predicted variable), moist convection, and large-scale precipitation. In the past year researchers have concentrated on experiments with the multi-level primitive equation model. The dynamical part of that model is similar to the spectral model used by the National Meteorological Center for medium-range forecasts. The model includes parameterizations of large-scale condensation and moist convection. To test the validity of results regarding the influence of convective precipitation, researchers can use either one of two different convective schemes in the model, a Kuo convective scheme or a modified Arakawa-Schubert scheme which includes downdrafts. By choosing one or the other scheme, they can evaluate the impact of the convective parameterization on the circulation. In the past year researchers performed a variety of initial-value experiments with the primitive-equation model. Using initial conditions typical of climatological winter conditions, they examined the behavior of synoptic and planetary waves growing in moist and dry environments. Surface conditions were representative of a zonally averaged ocean. They found that moist convection associated with baroclinic wave development was confined to the subtropics.

Branscome, Lee E.↗

A Sublimation Model for the Martian Polar Swiss-Cheese Features. Observational and Modeling Studies of the South Polar Residual Cap

In their pioneering work Leighton and Murray argued that the Mars atmosphere, which is 95 percent CO2 today, is controlled by vapor equilibrium with a much larger polar reservoir of solid CO2. Here we argue that the polar reservoir is small and cannot function as a long-term buffer to the more massive atmosphere. Our work is based on modeling the circular depressions (Swiss-cheese features) in the south polar cap. We argue that a solid CO2 layer approximately 8 meters thick is being etched away to reveal water ice underneath. Preliminary results from the THEMIS (Thermal Emission Imaging System) instrument seem to confirm our model.

Byrne, Shane↗

Relationship between ice water path and downward longwave radiation for clouds optically thin in the infrared: Observations and model calculations

A vertically pointing 3.2-cm radar is used to observe altostratus and cirrus clouds as they pass overhead. Radar reflectivities are used in combination with an empirical Z(sub i)-IWC (ice water content) relationship developed by Sassen (1987) to parameterize IWC, which is then integrated to obtain estimates of ice water path (IWP). The observed dataset is segregated into all-ice and mixed-phase periods using measurements of integrated liquid water paths (LWP) detected by a collocated, dual-channel microwave radiometer. The IWP values for the all ice periods are compared to measurements of infrared (IR) downward fluxes measured by a collocated narrowband (9.95-11.43 microns) IR radiometer, which results in scattergrams representing the observed dependence of IR fluxes on IWP. A two-stream model is used to calculate the infrared fluxes expected from ice clouds with boundary conditions specified by the actual clouds, and similar curves relating IWP and infrared fluxes are obtained. The model and observational results suggest that IWP is one of the primary controls on infrared thermal fluxes for ice clouds.

Uttal, Taneil↗

Observation and Modeling of the Solar Transition Region: Multi-Spectral Solar Telescope Array Observations - 1

We report on observations of the solar atmosphere in several extreme-ultraviolet and far-ultraviolet bandpasses obtained by the Multi-Spectral Solar Telescope Array, a rocket-borne spectroheliograph, on flights in 1987, 1991, and 1994, spanning the last solar maximum. Quiet-Sun emission observed in the 171-175 Angstrom bandpass, which includes lines of O v, O VI, Fe IX, and Fe X, has been analyzed to test models of the temperatures and geometries of the structures responsible for this emission. Analyses of intensity variations above the solar limb reveal scale heights consistent with a quiet-Sun plasma temperature of 500,000 less than or equal to T (sub e) less than or equal to 800,000 K. The structures responsible for the quiet-Sun EUV emission are modeled as small quasi-static loops. We submit our models to several tests. We compare the emission our models would produce in the bandpass of our telescope to the emission we have observed. We find that the emission predicted by loop models with maximum temperatures between 700,000 and 900,000 K are consistent with our observations. We also compare the absolute flux predicted by our models in a typical upper transition region line to the flux measured by previous observers. Finally, we present a preliminary comparison of the predictions of our models with diagnostic spectral line ratios from previous observers. Intensity modulations in the quiet Sun are observed to occur on a scale comparable to the supergranular scale. We discuss the implications that a distribution of loops of the type we model here would have for heating the local network at the loops' footpoints.

Oluseyi, Hakeem M.↗

Plasmasphere refilling - Recent observations and modeling

The phenomenon of plasmasphere refilling and general considerations of plasmasphere structure and plasmasphere-ionosphere coupling have received increased attention in recent years in terms of both observational considerations and modeling investigations. 'Global' observational and modeling studies of the plasmasphere structure are in the process of demonstrating the complex manner in which refilling and the spatial and temporal variations of convection interplay to produce complex structure in the plasmasphere; these studies are particularly timely as they could be extremely helpful for interpreting results from proposed imaging of plasmaspheric He(+). This review highlights the observational and theoretical/modeling progress during the past few years as well as introduces and places in context the particular contributions contained in this special section.

Singh, M.↗

Mapping Yearly Fine Resolution Global Surface Ozone through the Bayesian Maximum Entropy Data Fusion of Observations and Model Output for 1990–2017

Estimates of ground-level ozone concentrations are necessary to determine the human health burden of ozone. To support the Global Burden of Disease Study, we produce yearly fine resolution global surface ozone estimates from 1990 to 2017 through a data fusion of observations and models. As ozone observations are sparse in many populated regions, we use a novel combination of the M3Fusion and Bayesian Maximum Entropy (BME) methods. With M3Fusion, we create a multi-model composite by bias-correcting and weighting nine global atmospheric chemistry models based on their ability to predict observations (8,834 sites globally)in each region and year. BME is then used to integrate observations, such that estimates match observations at each monitoring site with the observational influence decreasing smoothly across space and time until the output matches the multi-model composite. After estimating at 0.5° resolution using BME, we add fine spatial detail from an additional model, yielding estimates at 0.1° resolution. Observed ozone is predicted more accurately (R2=0.81 at test point, 0.63 at 0.1°,0.62 at 0.5°) than the multi-model mean (R2=0.28 at 0.5°). Global ozone exposure is estimated to be increasing, driven by highly populated regions of Asia and Africa, despite decreases in the United States and Russia.

environmental modeling↗

Meridional Flow Variations: Implications for Flux Transport Models

Observations of the transport of magnetic elements across the Sun's surface indicate that, in general, the meridional flow extends all the way to the poles. Furthermore, the speed of this flow varies systematically over each solar cycle faster at minimum and slower at maximum. The flow speed on the approach to this (Cycle 24) minimum was substantially faster than it was at the last minimum. This increased flow speed should have produced a short Cycle 23 with strong polar fields in the flux transport dynamos used to predict Cycle 24. This is contrary to what we have seen. The increased flow speed does produce weak polar fields in the surface flux transport models like those used to estimate past irradiance variations. However, these surface flux transport models use meridional flow profiles that do not agree with the observations. Both types of flux transport models are missing identifiable components. We note that the observed changes in the structure of the meridional flow profile are consistent with Spruit's model for the torsional oscillations - suggesting that there may be associated irradiance variations.

Hthaway, David H.↗

An interactive environment for the analysis of large Earth observation and model data sets

We propose to develop an interactive environment for the analysis of large Earth science observation and model data sets. We will use a standard scientific data storage format and a large capacity (greater than 20 GB) optical disk system for data management; develop libraries for coordinate transformation and regridding of data sets; modify the NCSA X Image and X DataSlice software for typical Earth observation data sets by including map transformations and missing data handling; develop analysis tools for common mathematical and statistical operations; integrate the components described above into a system for the analysis and comparison of observations and model results; and distribute software and documentation to the scientific community.

Bowman, Kenneth P.↗

An interactive environment for the analysis of large Earth observation and model data sets

We propose to develop an interactive environment for the analysis of large Earth science observation and model data sets. We will use a standard scientific data storage format and a large capacity (greater than 20 GB) optical disk system for data management; develop libraries for coordinate transformation and regridding of data sets; modify the NCSA X Image and X Data Slice software for typical Earth observation data sets by including map transformations and missing data handling; develop analysis tools for common mathematical and statistical operations; integrate the components described above into a system for the analysis and comparison of observations and model results; and distribute software and documentation to the scientific community.

Bowman, Kenneth P.↗

Exploring the ENSO modulation of the QBO periods with GISS E2.2 models

Observational studies have shown that the El Niño–Southern Oscillation (ENSO) exerts an influence on the Quasi-Biennial Oscillation (QBO). The downward propagation of the QBO tends to speed up and slow down during El Niño and La Niña, respectively. Recent results from general circulation models have indicated that the ENSO modulation of the QBO requires a relatively high horizontal resolution, and that it does not show up in the climate models with parameterized but temporally constant gravity wave sources. Here, we demonstrate that the NASA Goddard Institute for Space Studies (GISS) E2.2 models can capture the observed ENSO modulation of the QBO period with a horizontal resolution of 2 ∘ latitude by 2.5 ∘ longitude but with its gravity wave sources being parameterized interactively. This is because El Niño events lead to more vigorous gravity wave sources generating more absolute momentum fluxes over the equatorial belt, as well as less filtering of these waves into the tropical lower stratosphere through a weakening of the Walker circulation. Various components of the ENSO system, such as the sea surface temperatures, the convective activities, and the Walker circulation, are intimately involved in the generation and propagation of parameterized gravity waves, through which ENSO modulates the QBO period in GISS E2.2 models.

El Niño–Southern Oscillation↗