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At least 109 records · Page 6

Using NASA's GeneLab for VESGEN Systems Analysis of Vascular Phenotypes from Stress and Other Signaling Pathways

One fundamental requirement shared by humans with all higher terrestrial life forms, including other vertebrates, insects, and higher land plants, is a complex, fractally branching vascular system. NASA's VESsel GENeration Analysis (VESGEN) software maps and quantifies vascular trees, networks, and tree-network composites according to weighted physiological rules such as vessel connectivity, tapering and bifurcational branching. According to fluid dynamics, successful vascular transport requires a complex distributed system of highly regulated laminar flow. Microvascular branching rules within vertebrates, dicot leaves and the other organisms therefore display many similarities. A unifying perspective is that vascular patterning offers a useful readout of molecular signaling that necessarily integrates these complex pathways. VESGEN has elucidated changes in vascular pattern resulting from inflammatory, developmental and other signaling within numerous tissues and major model organisms studied for Space Biology. For a new VESGEN systems approach, we analyzed differential gene expression in leaves of Arabidopsis thaliana reported by GeneLab (GLDS-7) for spaceflight. Vascularrelated changes in leaf gene expression were identified that can potentially be phenocopied by mutants in ground-based experiments. To link transcriptional, protein and other molecular change with phenotype, alterations in the spatial and dynamic dimensions of vascular patterns for Arabidopsis leaves and other model species are being co-localized with signaling patterns of single molecular expression analyzed as information dimensions. Previously, Drosophila microarray data returned from space suggested significant changes in genes related to wing venation development that include EGF, Notch, Hedghog, Wingless and Dpp signaling. Phenotypes of increasingly abnormal ectopic wing venation in the (non-spaceflight) Drosophila wing generated by overexpression of a Notch antagonist were analyzed by VESGEN. Other VESGEN research applications include the mouse retina, GI and coronary vessels, avian placental analogs and translational studies in the astronaut retina related to health challenges for long-duration missions.

Venation↗

Improving leaf spring phenology modelling for temperate tree species: An integration of the Farquhar–Medlyn photosynthesis model with the optimality‐based approach

Spring leaf phenology in temperate tree species is highly sensitive to climate change and significantly affects plant photosynthetic performance, resource utilization, competition and trophic interactions, thereby impacting various ecosystem functions. Although optimality-based (OPT) approaches for modelling spring phenology are increasingly recognized, the optimal representation of the underlying principle (balancing photosynthesis gains with chilling risks) remains controversial. Here, we integrated a coupled Farquhar–Medlyn photosynthesis model into an existing OPT model, and termed the resulting model R-OPT, and evaluated its performance using the PEP725 dataset, which includes 409,144 site-species-year records from across Europe. Our results show that R-OPT outperforms both the default OPT and non-optimality-based models (e.g. the chilling-forcing trade-off and growing degree day models). This improved performance is consistent within and across five focal tree species but varies by region: R-OPT excels in lowland, moist environments but is less effective in high-altitude, cold, and dry areas, possibly due to an incomplete representation of environmental constraints on photosynthetic carbon gain in these regions. Our research advances leaf spring phenology modelling by emphasizing an optimality principle that balances photosynthetic carbon gain with chilling risk, improving the representation of plant photosynthesis processes and enhancing understanding of environmental factors influencing phenology in the context of climate change.

coupled Farquhar–Medlyn photosynthesis model↗

The OH distribution in cometary atmospheres - A collisional Monte Carlo model for heavy species

The study presents an extension of the cometary atmosphere Monte Carlo particle trajectory model formalism which makes it both physically correct for heavy species and yet computationally reasonable. The derivation accounts for the collision path and scattering redirection of a heavy radical traveling through a fluid coma with a given radial distribution in outflow speed and temperature. The revised model verifies that the earlier fast-H atom approximations used in earlier work are valid, and it is applied to a case where the heavy radical formalism is necessary: the OH distribution. It is found that a steeper variation of water production rate with heliocentric distance is required for a water coma which is consistent with the velocity-resolved observations of Comet P/Halley.

Combi, Michael R.↗

Estimation of China Fusion Engineering Test Reactor performance and burning fraction in different pellet fueling scenarios by a multi-species radial transport model

Tritium self-sufficiency in future deuterium–tritium fusion reactors is a crucial challenge. As an engineering test reactor, the China Fusion Engineering Test Reactor requires a burning fraction of 3% for the goal to test the accessibility to the future fusion plant. To self-consistently simulate burning plasmas with profile changes in pellet injection scenarios and to estimate the corresponding burning fraction, a one-dimensional multi-species radial transport model is developed in the BOUT++ framework. Here several pellet-fueling scenarios are then tested in the model. The results show that the increased fueling depth improves the burning fraction by particle confinement improvement and fusion power increase. Nevertheless, by increasing the depth, the pellet cooling-down may significantly lower the temperature in the core region. Taking the density perturbation into consideration, the reasonable parameters of the fueling scenario in these simulations are estimated as pellet radius ${r}_{{\rm{p}}}=3\,{\rm{mm}},$ injection rate $=\,4\,\mathrm{Hz},$ and pellet injection velocity $=\,1000\mbox{-}2000\,{\rm{m}}\,{{\rm{s}}}^{-1}$ without drift or $450\,{\rm{m}}\,{{\rm{s}}}^{-1}$ with high-field-side drift.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Three-dimensional modelling of trace species in the Arctic lower stratosphere

A three-dimensional radiative-dynamical-chemical model has been developed and used to study some aspects of modeling the polar lower stratosphere. The model includes a comprehensive gas-phase chemistry scheme as well as a treatment of heterogeneous reactions occurring on the surface of polar stratospheric clouds. Tracer transport is treated by an accurate, nondispersive scheme with little diffusion suited to the representation of strong gradients. Results from a model simulation of early February 1990 are presented and used to illustrate the importance of the model transport scheme. The model simulation is also used to examine the potential for Arctic ozone destruction and the relative contributions of the chemical cycles responsible.

Chipperfield, Martyn↗

Deep learning models map rapid plant species changes from citizen science and remote sensing data

Anthropogenic habitat destruction and climate change are reshaping the geographic distribution of plants worldwide. However, we are still unable to map species shifts at high spatial, temporal, and taxonomic resolution. Here, we develop a deep learning model trained using remote sensing images from California paired with half a million citizen science observations that can map the distribution of over 2,000 plant species. Our model— Deepbiosphere— not only outperforms many common species distribution modeling approaches (AUC 0.95 vs. 0.88) but can map species at up to a few meters resolution and finely delineate plant communities with high accuracy, including the pristine and clear-cut forests of Redwood National Park. These fine-scale predictions can further be used to map the intensity of habitat fragmentation and sharp ecosystem transitions across human-altered landscapes. In addition, from frequent collections of remote sensing data, Deepbiosphere can detect the rapid effects of severe wildfire on plant community composition across a 2-y time period. These findings demonstrate that integrating public earth observations and citizen science with deep learning can pave the way toward automated systems for monitoring biodiversity change in real-time worldwide.

Gillespie, Lauren E.↗

Western Montana Ecological Forecasting II: Enhancing Habitat Suitability Modeling of Mustelid Species and Contaminant Monitoring in Northern Montana Using NASA Earth Observations

Environmental contaminants in aquatic ecosystems threaten both human and ecosystem health. Western Montana’s rivers possess great economic and ecological value, yet the status of contaminants in these systems can be unclear. Contaminants such as brominated flame-retardants, heavy metals, and pharmaceuticals negatively affect ecosystem health by traveling through the food chain and bioaccumulating in apex predators. Exposure to these contaminants can result in neurological, endocrine, and reproductive impairments in wildlife and humans. American mink (Neovison vison) and North American river otter (Lontra canadensis) have a predominantly aquatic diet and serve as reliable indicator species of environmental health. Working Dogs for Conservation (WD4C) uses detection dogs to locate scat samples of these species which are assessed for contaminants by the Virginia Institute of Marine Science (VIMS). With Software for Assisted Habitat Modeling (SAHM), the team generated current (2013-2020) and projected (2021-2040) habitat suitability models for mink and otter utilizing NASA Earth observations from Terra Moderate Resolution Imaging Spectroradiometer (MODIS), Global Precipitation Measurement Integrated Multi-Satellite Retrievals for GPM (GPM IMERG), Shuttle Radar Topography Mission (SRTM), and Soil Moisture Active Passive (SMAP). The habitat suitability maps’ study region encompassed Flathead National Forest and Blackfeet Indian Reservation. Additionally, the team created site accessibility and precipitation anomaly maps that display the viability of survey locations. The current habitat suitability models performed well (AUC-PR=0.88). The most important predictor variables for suitable habitat were distance to rivers, elevation, and land cover. These end products will further inform WD4C survey site selection and contaminant monitoring.

Chelsea Morton↗

Simulation of the present-day atmospheric ozone, odd nitrogen, chlorine and other species using a coupled 2-D model in isentropic coordinates

A zonally averaged two-dimensional model for chemical species in the atmosphere (Olaguer et al., 1990), with coupled dynamics, radiation transfer, and chemistry, is used to study the present-day atmospheric ozone, odd nitrogen, chlorine, other species. The model utilizes all zonally averaged physical equations of momentum, energy, and mass and determines self-consistently the advective and diffusive tranasport parameters from the temperature specific to the period of observation. A comparison of the model results with observations showed good agreement.

Yang, H.↗

Quantifying Volume Change in Porous Electrodes via the Multi-Species, Multi-Reaction Model

Automotive manufacturers are working to improve individual cell and overall pack design by increasing their performance, durability, and range, while reducing cost; and active material volume change is one of the more complex aspects that needs to be considered during this process. As the time from initial design to manufacture of electric vehicles is decreased, design work that used to rely solely on testing needs to be supplemented or replaced by virtual methods. As electrochemical engineers drive battery and system design using model-based methods, the need for coupled electrochemical/mechanical models that take into account the active material change utilizing physics based or semi-empirical approaches is necessary. In this study, we illustrated the applicability of a mechano-electrochemical coupled modeling method considering the multi-species, multi-reaction model as popularized by Verbrugge and Baker. To do this, validation tests were conducted using a computer-controlled press apparatus that can control the press displacement and press force with precision. The coupled MSMR volume change model was developed and its applicability to graphite and NMC cells was illustrated. The increased accuracy of the model considering the coupled MSMR volume change approach shows in the importance of accounting for individual gallery volume change behavior on cell level predictions.

25 ENERGY STORAGE↗

Glovebox CFD Analysis: Low-Flow, Laminar CFD Analysis of Glovebox Ventilation and Humidity Transport in Ansys Fluent 2025 R1

There are gloveboxes that frequently exceed the 30% relative humidity level required for operations. These exceedances result in alternative operations needing to be utilized. This report documents a computational fluid dynamics (CFD) analysis performed to characterize airflow and humidity transport within a representative glovebox under nominal, low-flow conditions. The analysis focuses on establishing the flow regime, identifying transport-limited regions, and evaluating the implications of laminar flow on humidity removal. A single-phase, laminar flow model with a species transport model was used to represent air and water vapor mixing. Results demonstrate that, at the nominal flow rates, airflow is laminar with weak mixing, which will result in long residence times, tens of minutes long or more, in low-velocity regions. These conclusions suggests that humidity reduction is transport-limited. This analysis provides qualitative insight into airflow structure and humidity transport trends. In addition to characterization of glovebox airflow and humidity transport, results are intended to inform experimental validation and future transient modeling efforts.

42 ENGINEERING↗

Aeroassist flight experiment aerodynamics and aerothermodynamics

The problem is to determine the transitional flow aerodynamics and aerothermodynamics, including the base flow characteristics, of the Aeroassist Flight Experiment (AFE). The justification for the computational fluid dynamic (CFD) Application stems from MSFC's system integration responsibility for the AFE. To insure that the AFE objectives are met, MSFC must understand the limitations and uncertainties of the design data. Perhaps the only method capable of handling the complex physics of the rarefied high energy AFE trajectory is Bird's Direct Simulation Monte Carlo (DSMC) technique. The 3-D code used in this analysis is applicable only to the AFE geometry. It uses the Variable Hard Sphere (VHS) collision model and five specie chemistry model available from Langley Research Center. The code is benchmarked against the AFE flight data and used as an Aeroassisted Space Transfer Vehicle (ASTV) design tool. The code is being used to understand the AFE flow field and verify or modify existing design data. Continued application to lower altitudes is testing the capability of the Numerical Aerodynamic Simulation Facility (NASF) to handle 3-D DSMC and its practicality as an ASTV/AFE design tool.

Brewer, Edwin B.↗

Stagnation flowfield analysis for an aeroassisted vehicle

Hypersonic reactive flowfield results are presented for the flow about an axisymmetric representation of a three-dimensional aeroassisted vehicle using the viscous shock-layer (VSL) and Navier-Stokes (NS) equations for low- and high-altitude entry conditions, respectively. Solutions are limited to the stagnation region. The NS results have been obtained by employing the surface recombination boundary condition for an 11-species air model, whereas the VSL calculations are carried out by using a 5-species model. Three widely used surface recombination rate models are implemented with these two flowfield calculation procedures. The low-density (or high altitude) NS solutions are obtained with surface slip equations and compare quite well with the direct simulation Monte Carlo predictions. For higher densities (or lower altitudes), the no-slip VSL solutions are considered adequate. Results from this study highlight the effect of surface catalyticity on surface heating and electron number density.

Gupta, Roop N.↗

Linking habitat suitability with a longleaf pine-hardwood model: Building a species-predictive fire-land management framework

Active management of fire-dependent ecosystems for specific species leads to complex tradeoffs, which affect conservation outcomes to other species. Therefore a multi-species evaluation of management actions is required. Habitat Suitability Models (HSMs) can help in predicting the likelihood of species occurrence using corresponding environmental variables and empirical relationships that link occurrence with specific environmental conditions. Incorporating multiple species into HSMs and relating them to habitat dynamics is crucial for ecosystems that require active management with prescribed fire. To address this issue, we developed multi-species HSM driven within an existing population model of the longleaf pine-hardwood ecosystem to assess the suitability of an ecosystem given different fire management strategies and environmental conditions. The population model used in this study provides spatial and temporal changes of longleaf pine-hardwood habitat structure in response to fire. These habitat values are used by the HSM to calculate habitat suitability for three threatened and endangered faunal species of this ecosystem, which all thrive with frequent fire, but have unique habitat requirements. Transient habitat conditions are traced to predict longleaf pine ecosystem trajectories under various management strategies, thereby evaluating current land management actions, such as thinning or prescribed fire frequencies. We tested a suite of environmental conditions to emphasize the sensitivity of the species to different fire management actions. The results of our modeling suggest that maximum suitable habitat for all three species can be achieved with fire frequency occurring at approximately once every three years. The modeling results support current management actions and provide a new habitat assessment tool that incorporates ecological factors for multiple species, thus providing for habitat optimization.

54 ENVIRONMENTAL SCIENCES↗

A detailed analysis of the erythropoietic control system in the human, squirrel, monkey, rat and mouse

The erythropoiesis modeling performed in support of the Body Fluid and Blood Volume Regulation tasks is described. The mathematical formulation of the species independent model, the solutions to the steady state and dynamic versions of the model, and the individual species specific models for the human, squirrel monkey, rat and mouse are outlined. A detailed sensitivity analysis of the species independent model response to parameter changes and how those responses change from species to species is presented. The species to species response to a series of simulated stresses directly related to blood volume regulation during space flight is analyzed.

Nordheim, A. W.↗

A Review and Comparison of Mouse and Rat Responses to Micro Gravity, Hyper Gravity and Simulated Models of Partial Gravity; Species Differences, Gaps in the Available Data, and Consideration of the Advantages and Caveats of Each Model for Spaceflight

Laboratory strains of mice and rat are widely used to study mammalian responses to stimulus, and both have been studied under a variety of gravity conditions, including space flight. We compared results obtained from exposure to spaceflight and microgravity, hyper gravity via centrifugation, earth gravity, and models of simulated partial gravity (hind-limb unloading and partial weight bearing treatments). We examined the reported changes in survival, body mass, circadian rhythm (body temperature and activity levels), behavior, bone, muscle, immune, cardio-vasculature, vestibular, reproduction and neonate survival, microbiome, and the visual system. Not all categories have published data for both species, some have limited data, and there are variations in experiment design that allow for only relative comparisons to be considered. The data reveal species differences in both the level of gravity required to obtain a response, degree of response, and in temporal expression of responses. Examination of the data across the gravity levels allows consideration of the hypothesis that gravitational responses follow a continuum, and organ specific differences are noted. In summary, we present advantages and caveats of each model system as pertains to gravitational biology research and identify gaps in our knowledge of how these mammals respond to gravity.

mouse rat gravity↗