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At least 109 records · Page 6

Steady flows at the top of earth's core derived from geomagnetic field models

Select models of the main geomagnetic field and its secular variation are extrapolated to the base of an insulating mantle and used to estimate the adjacent fluid motion of a perfectly conducting outer core. The assumption of steady motion provides formally unique solutions and is tested along with that of no upwelling. The hypothesis of no upwelling is found to be substantially worse than that of steady motion. Although the actual motion is not thought to be steady, the large-scale secular variation at the top of the core can be adequately described by a large-scale, combined toroidal-poloidal circulation which is steady for intervals of at least a decade or two. The derived flows include a bulk westward drift but are complicated by superimposed jets, gyres, and surface divergence indicative of vigorous vertical motion at depth. The circulation pattern and key global properties including rms speed, upwelling, and westward drift are found to be fairly insensitive to variations in modeling parameters.

Voorhies, Coerte V.↗

Population Pharmacokinetics of Intranasal Scopolamine

Introduction: An intranasal gel dosage formulation of scopolamine (INSCOP) was developed for the treatment of Space Motion Sickness (SMS).The bioavailability and pharmacokinetics (PK) was evaluated using data collected in Phase II IND protocols. We reported earlier statistically significant gender differences in PK parameters of INSCOP at a dose level of 0.4 mg. To identify covariates that influence PK parameters of INSCOP, we examined population covariates of INSCOP PK model for 0.4 mg dose. Methods: Plasma scopolamine concentrations versus time data were collected from 20 normal healthy human subjects (11 male/9 female) after a 0.4 mg dose. Phoenix NLME was employed for PK analysis of these data using gender, body weight and age as covariates for model selection. Model selection was based on a likelihood ratio test on the difference of criteria (-2LL). Statistical significance for base model building and individual covariate analysis was set at P less than 0.05{delta(-2LL)=3.84}. Results: A one-compartment pharmacokinetic model with first-order elimination best described INSCOP concentration ]time profiles. Inclusion of gender, body weight and age as covariates individually significantly reduced -2LL by the cut-off value of 3.84(P less than 0.05) when tested against the base model. After the forward stepwise selection and backward elimination steps, gender was selected to add to the final model which had significant influence on absorption rate constant (ka) and the volume of distribution (V) of INSCOP. Conclusion: A population pharmacokinetic model for INSCOP has been identified and gender was a significant contributing covariate for the final model. The volume of distribution and Ka were significantly higher in males than in females which confirm gender-dependent pharmacokinetics of scopolamine after administration of a 0.4 mg dose.

Wu, L.↗

Dataset for Top Model Decision Tree: Selecting Segmentation Models for Reliable Quantitative Analysis in Low- and Ultralow-Dose CryoEM

Motivation Multiple deep learning model architectures can be used to segment bacterial membranes in cryoEM images. However, an AI-based tool advancement is often presented with only a single segmentation model for broad use, and this single model may show inconsistent results across datasets from different users. Here, we present the Top Model Decision Tree, a model screening framework to screen for the best model to generate bacterial inner and outer membrane masks based on user priorities. We use pre-trained segmentation models from YOLOv11, YOLO26, U-Net, Detectron2 and SAM3 fine-tuned on bacterial inner and outer membranes imaged with cryoEM. Run the Framework This notebook must be opened in Google Colab. Mount Google Drive and run with a GPU-based runtime. Open the notebook and follow steps to git clone in folders and files within this repository. There will be a repeating top_model_decision_tree.ipynb (notebook clone) that will not be used. Save your .png binary mask files and .csv table outputs within your Google Drive or download before closing the notebook. The models and all analysis/training scripts are available at [GitHub: https://github.com/Lynnicia/CryoEM_membranes_top_model_decision_tree and https://github.com/Sireesiru/Semantic-Segmentation-of-bacterial-cell-envelope-using-U-Nets.

59 BASIC BIOLOGICAL SCIENCES↗

Data-Driven Selection of Tessellation Models Describing Polycrystalline Microstructures

Tessellation models have proven to be useful for the geometric description of grain microstructures in polycrystalline materials. With the use of a suitable tessellation model, the complex morphology of grains can be represented by a small number of parameters assigned to each grain, which not only entails a significant reduction in complexity, but also facilitates the investigation of certain geometric features of the microstructure. However, for a given set of microstructural data, the choice of a particular geometric model is traditionally based on researcher intuition. The model should provide a sufficiently good approximation to the data, while keeping the number of parameters small. In this paper, we discuss general aspects of the process of model selection and suggest several criteria for selecting an appropriate candidate from a certain set of tessellation models. The choice of candidate represents a trade-off between accuracy and complexity of the model. Here, the selected model is used solely to approximate given data samples, but it also provides guidance for developing stochastic tessellation models and generating virtual microstructures. Model fitting is carried out by simulated annealing, applied in a consistent manner to twelve different tessellation models.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Model averaging approaches to data subset selection

Model averaging is a useful and robust method for dealing with model uncertainty in statistical analysis. Often, it is useful to consider data subset selection at the same time, in which model selection criteria are used to compare models across different subsets of the data. Two different criteria have been proposed in the literature for how the data subsets should be weighted. We compare the two criteria closely in a unified treatment based on the Kullback-Leibler divergence and conclude that one of them is subtly flawed and will tend to yield larger uncertainties due to loss of information. Here, analytical and numerical examples are provided.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Adaptive selection and validation of models of complex systems in the presence of uncertainty

This study describes versions of OPAL, the Occam-Plausibility Algorithm in which the use of Bayesian model plausibilities is replaced with information theoretic methods, such as the Akaike Information Criterion and the Bayes Information Criterion. Applications to complex systems of coarse-grained molecular models approximating atomistic models of polyethylene materials are described. All of these model selection methods take into account uncertainties in the model, the observational data, the model parameters, and the predicted quantities of interest. A comparison of the models chosen by Bayesian model selection criteria and those chosen by the information-theoretic criteria is given.

97 MATHEMATICS AND COMPUTING↗

A Parameter Subset Selection Algorithm for Mixed-Effects Models

Mixed-effects models are commonly used to statistically model phenomena that include attributes associated with a population or general underlying mechanism as well as effects specific to individuals or components of the general mechanism. This can include individual effects associated with data from multiple experiments. However, the parameterizations used to incorporate the population and individual effects are often unidentifiable in the sense that parameters are not uniquely specified by the data. As a result, the current literature focuses on model selection, by which insensitive parameters are fixed or removed from the model. Model selection methods that employ information criteria are applicable to both linear and nonlinear mixed-effects models, but such techniques are limited in that they are computationally prohibitive for large problems due to the number of possible models that must be tested. To limit the scope of possible models for model selection via information criteria, we introduce a parameter subset selection (PSS) algorithm for mixed-effects models, which orders the parameters by their significance. In conclusion, we provide examples to verify the effectiveness of the PSS algorithm and to test the performance of mixed-effects model selection that makes use of parameter subset selection.

97 MATHEMATICS AND COMPUTING↗