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At least 109 records · Page 6

Understanding sextupole

In this study, we reassess the dynamics within a simple accelerator lattice featuring a single degree of freedom and incorporating a sextupole magnet. In the initial segment, we revisit the H\'enon quadratic map, a representation of a general transformation with quadratic nonlinearity. In the subsequent section, we unveil that a conventional sextupole is essentially a composite structure, comprising an integrable McMillan sextupole and octupole, along with non-integrable corrections of higher orders. This fresh perspective sheds light on the fundamental nature of the sextupole magnet, providing a more nuanced understanding of its far-from-trivial chaotic dynamics. Importantly, it enables the description of driving terms of the second and third orders and introduces associated nonlinear Courant-Snyder invariant.

43 PARTICLE ACCELERATORS↗

Understanding Sextupole

In this study, we reassess the dynamics within a simple accelerator lattice featuring a single degree of freedom and incorporating a sextupole magnet. In the initial segment, we revisit the H\'enon quadratic map, a representation of a general transformation with quadratic nonlinearity. In the subsequent section, we unveil that a conventional sextupole is essentially a composite structure, comprising an integrable McMillan sextupole and octupole, along with non-integrable corrections of higher orders. This fresh perspective sheds light on the fundamental nature of the sextupole magnet, providing a more nuanced understanding of its far-from-trivial chaotic dynamics. Importantly, it enables the description of driving terms of the second and third orders and introduces associated nonlinear Courant-Snyder invariant.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

An integrated software suite for surface-based analyses of cerebral cortex

The authors describe and illustrate an integrated trio of software programs for carrying out surface-based analyses of cerebral cortex. The first component of this trio, SureFit (Surface Reconstruction by Filtering and Intensity Transformations), is used primarily for cortical segmentation, volume visualization, surface generation, and the mapping of functional neuroimaging data onto surfaces. The second component, Caret (Computerized Anatomical Reconstruction and Editing Tool Kit), provides a wide range of surface visualization and analysis options as well as capabilities for surface flattening, surface-based deformation, and other surface manipulations. The third component, SuMS (Surface Management System), is a database and associated user interface for surface-related data. It provides for efficient insertion, searching, and extraction of surface and volume data from the database.

NASA Discipline Neuroscience↗

Poly-Pattern Compressive Segmentation of ASTER Data for GIS

Pattern-based segmentation of multi-band image data, such as ASTER, produces one-byte and two-byte approximate compressions. This is a dual segmentation consisting of nested coarser and finer level pattern mappings called poly-patterns. The coarser A-level version is structured for direct incorporation into geographic information systems in the manner of a raster map. GIs renderings of this A-level approximation are called pattern pictures which have the appearance of color enhanced images. The two-byte version consisting of thousands of B-level segments provides a capability for approximate restoration of the multi-band data in selected areas or entire scenes. Poly-patterns are especially useful for purposes of change detection and landscape analysis at multiple scales. The primary author has implemented the segmentation methodology in a public domain software suite.

Myers, Wayne↗

Stereo-Based Region-Growing using String Matching

We present a novel stereo algorithm based on a coarse texture segmentation preprocessing phase. Matching is performed using a string comparison. Matching sub-strings correspond to matching sequences of textures. Inter-scanline clustering of matching sub-strings yields regions of matching texture. The shape of these regions yield information concerning object's height, width and azimuthal position relative to the camera pair. Hence, rather than the standard dense depth map, the output of this algorithm is a segmentation of objects in the scene. Such a format is useful for the integration of stereo with other sensor modalities on a mobile robotic platform. It is also useful for localization; the height and width of a detected object may be used for landmark recognition, while depth and relative azimuthal location determine pose. The algorithm does not rely on the monotonicity of order of image primitives. Occlusions, exposures, and foreshortening effects are not problematic. The algorithm can deal with certain types of transparencies. It is computationally efficient, and very amenable to parallel implementation. Further, the epipolar constraints may be relaxed to some small but significant degree. A version of the algorithm has been implemented and tested on various types of images. It performs best on random dot stereograms, on images with easily filtered backgrounds (as in synthetic images), and on real scenes with uncontrived backgrounds.

Mandelbaum, Robert↗

Perivascular network segmentations derived from high-field MRI and their implications for perivascular and parenchymal mass transport in the rat brain

A custom segmentation workflow was applied to ex vivo high-field MR images of rat brains acquired following in vivo intraventricular contrast agent infusion to generate maps of the perivascular spaces (PVS). The resulting perivascular network segmentations enabled analysis of perivascular connections to the ventricles, parenchymal solute clearance, and dispersive solute transport within PVS. Numerous perivascular connections between the brain surface and the ventricles suggest the ventricles integrate into a PVS-mediated clearance system and raise the possibility of cerebrospinal fluid (CSF) return from the subarachnoid space to the ventricles via PVS. Assuming rapid solute exchange between the PVS and CSF spaces primarily by advection, the extensive perivascular network decreased the mean clearance distance from parenchyma to the nearest CSF compartment resulting in an over 21-fold reduction in the estimated diffusive clearance time scale, irrespective of solute diffusivity. This corresponds to an estimated diffusive clearance time scale under 10 min for amyloid-beta which suggests that the widespread distribution of PVS may render diffusion an effective parenchymal clearance mechanism. Additional analysis of oscillatory solute dispersion within PVS indicates that advection rather than dispersion is likely the primary transport mechanism for dissolved compounds greater than 66 kDa in the long (> 2 mm) perivascular segments identified here, although dispersion may be significant for smaller compounds in shorter perivascular segments.

59 BASIC BIOLOGICAL SCIENCES↗

Automated Grain Boundary (GB) Segmentation and Microstructural Analysis in 347H Stainless Steel Using Deep Learning and Multimodal Microscopy

Austenitic 347H stainless steel offers superior mechanical properties and corrosion resistance required for extreme operating conditions such as high temperature. The change in microstructure due to composition and process variations is expected to impact material properties. Identifying microstructural features such as grain boundaries thus becomes an important task in the process-microstructure-properties loop. Applying convolutional neural network (CNN)-based deep learning models is a powerful technique to detect features from material micrographs in an automated manner. In contrast to microstructural classification, supervised CNN models for segmentation tasks require pixel-wise annotation labels. However, manual labeling of the images for the segmentation task poses a major bottleneck for generating training data and labels in a reliable and reproducible way within a reasonable timeframe. Microstructural characterization especially needs to be expedited for faster material discovery by changing alloy compositions. Here, in this study, we attempt to overcome such limitations by utilizing multimodal microscopy to generate labels directly instead of manual labeling. We combine scanning electron microscopy images of 347H stainless steel as training data and electron backscatter diffraction micrographs as pixel-wise labels for grain boundary detection as a semantic segmentation task. The viability of our method is evaluated by considering a set of deep CNN architectures. We demonstrate that despite producing instrumentation drift during data collection between two modes of microscopy, this method performs comparably to similar segmentation tasks that used manual labeling. Additionally, we find that naïve pixel-wise segmentation results in small gaps and missing boundaries in the predicted grain boundary map. By incorporating topological information during model training, the connectivity of the grain boundary network and segmentation performance is improved. Finally, our approach is validated by accurate computation on downstream tasks of predicting the underlying grain morphology distributions which are the ultimate quantities of interest for microstructural characterization.

36 MATERIALS SCIENCE↗

Integrating very-high-resolution imagery, Sentinel-2 time-series data, and machine learning to map shrub fractional abundance across arid and semi-arid ecosystems in China

Shrub fractional abundance (SFA), the proportion of shrub cover per unit area, serves as a critical indicator of environmental aridity and ecosystem health in arid and semi-arid regions, particularly across the Mongolian steppe. However, large-scale SFA mapping in Mongolian steppe ecosystems remains challenging due to the small crown size of shrubs, their sparse distribution, and spectral overlap with coexisting low vegetation (e.g., grasses and herbs), which hinders accurate detection using coarser-resolution satellite data or traditional field surveys. To address these challenges, we developed a two-step approach that integrates very-high-resolution (VHR) imagery, time-series Sentinel-2 data, and deep learning techniques. First, we generated high-accuracy benchmark maps of individual shrub crowns from 0.5 m VHR imagery by combining manual segmentation with a hybrid deep learning framework (Dino V2 and convolutional neural networks). Second, we used these shrub crown maps as training data to build an XGBoost model for predicting SFA from 20 m Sentinel-2 time-series data, leveraging phenological information to improve estimation. We validated our approach across 70 sites (1km 2 each) in the Inner Mongolia Autonomous Region, which is representative of Mongolian steppe ecosystems. From VHR imagery, we mapped 1.31 million shrub crowns with an accuracy of R 2 = 0.92. Scaling up with Sentinel-2 data yielded regional SFA maps with an R 2 = 0.60. Further SHAP (SHapley Additive exPlanations) analysis on the developed XGBoost model revealed that phenological metrics (particularly observations in early-May, mid-July, and late-September), which distinguish shrub phenology from that of other land cover types (e.g., grasses and bare soil), were the most influential predictors of SFA. Finally, our regional SFA maps uncovered unimodal relationships between shrub distribution and climate variables, peaking at mean annual minimum temperatures near 0 °C and annual precipitation around 200 mm. Collectively, these findings demonstrate how the integration of multi-source remote sensing and machine learning can overcome historical limitations in SFA mapping, enabling accurate, spatially continuous assessments across vast Inner-Mongolian steppe ecosystems. Our framework has the potential to be applied to other steppe ecosystems and dryland ecosystems across the Mongolian steppe and beyond, offering a foundation for improved monitoring and ecological impact assessments in the face of global climate changes.

Arid and semi-arid landscapes↗

Median bed-material sediment particle size across rivers in the contiguous US

Abstract. Bed-material sediment particle size data, particularly the median sediment particle size (D50), are critical for understanding and modeling riverine sediment transport. However, sediment particle size observations are primarily available at individual sites. Large-scale modeling and assessment of riverine sediment transport are limited by the lack of continuous regional maps of bed-material sediment particle size. We hence present a map of D50 over the contiguous US in a vector format that corresponds to approximately 2.7 million river segments (i.e., flowlines) in the National Hydrography Dataset Plus (NHDPlus) dataset. We develop the map in four steps: (1) collect and process the observed D50 data from 2577 U.S. Geological Survey stations or U.S. Army Corps of Engineers sampling locations; (2) collocate these data with the NHDPlus flowlines based on their geographic locations, resulting in 1691 flowlines with collocated D50 values; (3) develop a predictive model using the eXtreme Gradient Boosting (XGBoost) machine learning method based on the observed D50 data and the corresponding climate, hydrology, geology, and other attributes retrieved from the NHDPlus dataset; and (4) estimate the D50 values for flowlines without observations using the XGBoost predictive model. We expect this map to be useful for various purposes, such as research in large-scale river sediment transport using model- and data-driven approaches, teaching environmental and earth system sciences, planning and managing floodplain zones, etc. The map is available at https://doi.org/10.5281/zenodo.4921987 (Li et al., 2021a).

54 ENVIRONMENTAL SCIENCES↗

Correlative X-ray micro-nanotomography with scanning electron microscopy at the Advanced Light Source

Geological samples are inherently multi-scale. Understanding their bulk physical and chemical properties requires characterization down to the nano-scale. A powerful technique to study the three-dimensional microstructure is X-ray tomography, but it lacks information about the chemistry of samples. To develop a methodology for measuring the multi-scale 3D microstructure of geological samples, correlative X-ray micro- and nanotomography were performed on two rocks followed by scanning electron microscopy with energy-dispersive spectroscopy (SEM-EDS) analysis. The study was performed in five steps: (i) micro X-ray tomography was performed on rock sample cores, (ii) samples for nanotomography were prepared using laser milling, (iii) nanotomography was performed on the milled sub-samples, (iv) samples were mounted and polished for SEM analysis and (v) SEM imaging and compositional mapping was performed on micro and nanotomography samples for complimentary information. Correlative study performed on samples of serpentine and basalt revealed multiscale 3D structures involving both solid mineral phases and pore networks. Significant differences in the volume fraction of pores and mineral phases were also observed dependent on the imaging spatial resolution employed. This highlights the necessity for the application of such a multiscale approach for the characterization of complex aggregates such as rocks. Information acquired from the chemical mapping of different phases was also helpful in segmentation of phases that did not exhibit significant contrast in X-ray imaging. Adoption of the protocol used in this study can be broadly applied to 3D imaging studies being performed at the Advanced Light Source and other user facilities.

58 GEOSCIENCES↗

Data-driven Mapping of the Mouse Connectome: The utility of transfer learning to improve the performance of deep learning models performing axon segmentation on light-sheet microscopy images

Light sheet microscopy has made possible the high temporal and spatial 3D imaging of both fixed and live biological tissue, with samples as large as the entire mouse brain. However, segmentation and quantification of that data remains a time-consuming manual process. Machine learning methods promise the possibility of automating this process. This study seeks to advance the performance of prior models through the application of refinements such as transfer learning.

59 BASIC BIOLOGICAL SCIENCES↗

JWST NIRCam Defocused Imaging Photometric Stability Performance and How It Can Sense Mirror Tilts

We use JWST NIRCam short-wavelength photometry to capture a transit lightcurve of the exoplanet HAT-P-14 b to assess performance as part of instrument commissioning. The short-wavelength precision is 152 ppm per 27 s integration as measured over the full time series compared to a theoretical limit of 107 ppm, after corrections to spatially correlated 1/f noise. Persistence effects from charge trapping are well fit by an exponential function with short characteristic timescales, settling on the order of 5–15 minutes. The short-wavelength defocused photometry is also uniquely well suited to measure the real-time wave-front error of JWST. Analysis of the images and reconstructed wave-front maps indicates that two different hexagonal primary mirror segments exhibited “tilt events,” where they changed orientation rapidly in less than ∼1.4 s. In some cases, the magnitude and timing of the flux jumps caused by tilt events can be accurately predicted with a telescope model. These tilt events can be sensed by simultaneous longer-wavelength NIRCam grism spectral images alone in the form of changes to the point-spread function, diagnosed from the full width at half maximum. They can also be sensed with the fine guidance sensor instrument from difference images. Tilt events possibly from sudden releases of stress in the backplane structure behind the mirrors were expected during the commissioning period because they were found in ground-based testing. Tilt events have shown signs of decreasing in frequency but have not disappeared completely. The detectors exhibit some minor (less than 1%) deviations from linear behavior in the first few groups of each integration, potentially impacting absolute fluxes and transit depths on bright targets, where only a handful of groups are possible. Overall, the noise is within 50% of the theoretical photon noise and read noise. This bodes well for high-precision measurements of transiting exoplanets and other time variable targets.

Everett Schlawin↗

Hydrogen Effects on Cladding Performance during Simulated Loss of Coolant Accident Testing

Fresh Zircaloy cladding segments were charged with hydrogen and subjected to simulated Loss of Coolant Accident (LOCA) conditions to assess the impact of hydrogen on the cladding mechanical performance and rupture resistance. The cladding rupture temperature decreased by 10 °C for every 100 wppm H added into the system for two different internal pressurization cases. Post-test analysis showed a loss of ductility with increasing hydrogen content, evident through decreased balloon sizes, smaller rupture openings, and sharper rupture interfaces. Digital image correlation was used to map the cladding strain in situ for two cladding segments. An elevated intermediate temperature uniform strain was visible for the hydride cladding, occurring prior to the decreased ductility during balloon and rupture determined from posttest fractography and microscopy. The thermal stability of Zr alloys as a function of hydrogen concentration and the thermal stability of Zr hydride as a function of temperature are likely responsible for the uniform deformation behavior at intermediate temperatures. The present framework for rapid assessment of hydrogen effects on cladding rupture can be utilized as an initial comparison to high burnup cladding thermomechanical response to a LOCA, where local regions may contain high concentrations of precipitated Zr hydride phase.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Hydrogen Effects on Cladding Performance during Simulated Loss of Coolant Accident Testing

Fresh Zircaloy cladding segments were charged with hydrogen and subjected to simulated Loss of Coolant Accident (LOCA) conditions to assess the impact of hydrogen on the cladding mechanical performance and rupture resistance. The cladding rupture temperature decreased by 10 °C for every 100 wppm H added into the system for two different internal pressurization cases. Post-test analysis showed a loss of ductility with increasing hydrogen content, evident through decreased balloon sizes, smaller rupture openings, and sharper rupture interfaces. Digital image correlation was used to map the cladding strain in situ for two cladding segments. An elevated intermediate temperature uniform strain was visible for the hydride cladding, occurring prior to the decreased ductility during balloon and rupture determined from posttest fractography and microscopy. The thermal stability of Zr alloys as a function of hydrogen concentration and the thermal stability of Zr hydride as a function of temperature are likely responsible for the uniform deformation behavior at intermediate temperatures. The present framework for rapid assessment of hydrogen effects on cladding rupture can be utilized as an initial comparison to high burnup cladding thermomechanical response to a LOCA, where local regions may contain high concentrations of precipitated Zr hydride phase.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

A Marker-Based Approach for the Automated Selection of a Single Segmentation from a Hierarchical Set of Image Segmentations

The Hierarchical SEGmentation (HSEG) algorithm, which combines region object finding with region object clustering, has given good performances for multi- and hyperspectral image analysis. This technique produces at its output a hierarchical set of image segmentations. The automated selection of a single segmentation level is often necessary. We propose and investigate the use of automatically selected markers for this purpose. In this paper, a novel Marker-based HSEG (M-HSEG) method for spectral-spatial classification of hyperspectral images is proposed. Two classification-based approaches for automatic marker selection are adapted and compared for this purpose. Then, a novel constrained marker-based HSEG algorithm is applied, resulting in a spectral-spatial classification map. Three different implementations of the M-HSEG method are proposed and their performances in terms of classification accuracies are compared. The experimental results, presented for three hyperspectral airborne images, demonstrate that the proposed approach yields accurate segmentation and classification maps, and thus is attractive for remote sensing image analysis.

Tarabalka, Y.↗

Development and validation of an automatic method to detect the latest contracting viable left ventricular segments to assist guide CRT therapy from gated SPECT myocardial perfusion imaging

Objectives: The purpose of this study is to use ECG-gated SPECT MPI to detect the latest contracting viable left ventricular (LV) segments to help guide the LV probe placement used in CRT therapy and to validate segment selection against the visual integration method by experts. Methods: For each patient, the resting ECG-gated SPECT MPI short-axis images were sampled in 3D to generate a polar map of the perfusion distribution used to determine LV myocardial viability, and to measure LV synchronicity using our phase analysis tool. In the visual integration method, two experts visually interpreted the LV viability and mechanical dyssynchrony from the short-axis images and polar maps of viability and phase, to determine the latest contracting viable segments using the 17-segment model. In the automatic method, the apical segments, septal segments, and segments with more than 50% scar were excluded as these are not candidates for CRT LV probe placement. Amongst the remaining viable segments, the segments, whose phase angles were within 10° of the latest phase angle (the most delayed contracting segment), were identified for potential CRT LV probe placement and ranked based on the phase angles of the segments. Both methods were tested in 36 pre-CRT patients who underwent ECG-gated SPECT MPI. The accuracy was determined as the percent agreement between the visual integration and automatic methods. The automatic method was performed by a second independent operator to evaluate the inter-operator processing reproducibility. Results: In all the 36 patients, the LV lead positions of the 1st choices recommended by the automatic and visual integration methods were in the same segments in 35 patients, which achieved an agreement rate of 97.2%. In the inter-operator reproducibility test, the LV lead positions of the 1st choices recommended by the two operators were in the same segments in 25 patients, and were in the adjacent segments in 7 patients, which achieved an overall agreement of 88.8%. Conclusions: An automatic method has been developed to detect the latest contracting viable LV segments to help guide the LV probe placement used in CRT therapy. The retrospective clinical study with 36 patients suggests that this method has high agreement against the visual integration method by experts and good inter-operator reproducibility. Consequently, this method is promising to be a clinical tool to recommend the CRT LV lead positions.

62 RADIOLOGY AND NUCLEAR MEDICINE↗