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At least 109 records · Page 6

Prediction of plant complex traits via integration of multi-omics data

The formation of complex traits is the consequence of genotype and activities at multiple molecular levels. However, connecting genotypes and these activities to complex traits remains challenging. Here, we investigate whether integrating genomic, transcriptomic, and methylomic data can improve prediction for six Arabidopsis traits. We find that transcriptome- and methylome-based models have performances comparable to those of genome-based models. However, models built for flowering time using different omics data identify different benchmark genes. Nine additional genes identified as important for flowering time from our models are experimentally validated as regulating flowering. Gene contributions to flowering time prediction are accession-dependent and distinct genes contribute to trait prediction in different genotypes. Models integrating multi-omics data perform best and reveal known and additional gene interactions, extending knowledge about existing regulatory networks underlying flowering time determination. These results demonstrate the feasibility of revealing molecular mechanisms underlying complex traits through multi-omics data integration.

59 BASIC BIOLOGICAL SCIENCES

Observing tectonic plate motions and deformations from satellite laser ranging

The scope of geodesy has been greatly affected by the advent of artificial near-earth satellites. The present paper provides a description of the results obtained from the reduction of data collected with the aid of satellite laser ranging. It is pointed out that dynamic reduction of satellite laser ranging (SLR) data provides very precise positions in three dimensions for the laser tracking network. The vertical components of the stations, through the tracking geometry provided by the global network and the accurate knowledge of orbital dynamics, are uniquely related to the center of mass of the earth. Attention is given to the observations, the methodologies for reducing satellite observations to estimate station positions, Lageos-observed tectonic plate motions, an improved temporal resolution of SLR plate motions, and the SLR vertical datum.

Christodoulidis, D. C.

Interactive and cooperative sensing and control for advanced teleoperation

This paper presents the paradigm of interactive and cooperative sensing and control as a fundamental mechanism of integrating and fusing the strengths of man and machine for advanced teleoperation. The interactive and cooperative sensing and control is considered as an extended and generalized form of traded and shared control. The emphasis of interactive and cooperative sensing and control is given to the distribution of mutually nonexclusive subtasks to man and machine, the interactive invocation of subtasks under the man/machine symbiotic relationship, and the fusion of information and decisionmaking between man and machine according to their confidence measures. The proposed interactive and cooperative sensing and control system is composed of such major functional blocks as the logical sensor system, the sensor-based local autonomy, the virtual environment formation, and the cooperative decision-making between man and machine. The Sensing-Knowledge-Command (SKC) fusion network is proposed as a fundamental architecture for implementing cooperative and interactive sensing and control. Simulation results are shown.

Lee, Sukhan

NASA/DOD Aerospace Knowledge Diffusion Research Project. Paper 39: The role of computer networks in aerospace engineering

This paper presents selected results from an empirical investigation into the use of computer networks in aerospace engineering. Such networks allow aerospace engineers to communicate with people and access remote resources through electronic mail, file transfer, and remote log-in. The study drew its subjects from private sector, government and academic organizations in the U.S. aerospace industry. Data presented here were gathered in a mail survey, conducted in Spring 1993, that was distributed to aerospace engineers performing a wide variety of jobs. Results from the mail survey provide a snapshot of the current use of computer networks in the aerospace industry, suggest factors associated with the use of networks, and identify perceived impacts of networks on aerospace engineering work and communication.

Bishop, Ann P.

NASA/DOD Aerospace Knowledge Diffusion Research Project. Paper 47: The value of computer networks in aerospace

This paper presents data on the value of computer networks that were obtained from a national survey of 2000 aerospace engineers that was conducted in 1993. Survey respondents reported the extent to which they used computer networks in their work and communication and offered their assessments of the value of various network types and applications. They also provided information about the positive impacts of networks on their work, which presents another perspective on value. Finally, aerospace engineers' recommendations on network implementation present suggestions for increasing the value of computer networks within aerospace organizations.

Bishop, Ann Peterson

A Belief-Based Model of Air Traffic Controllers Performing Separation Assurance

A model of an air traffic controller performing a separation assurance task was produced. The model was designed to be simple to use and deploy in a simulator, but still provide realistic behavior. The model is based upon an evaluation of the safety function of the controller for separation assurance, and utilizes fast and frugal heuristics and belief networks to establish a knowledge set for the controller model. Based on this knowledge set, the controller acts to keep aircraft separated. Validation results are provided to demonstrate the model s performance.

Landry, S.J.

IT Security Support for the Spaceport Command Control Systems Development Ground Support Development Operations

Security is one of the most if not the most important areas today. After the several attacks on the United States, security everywhere was heightened from Airports to the communication among the military branches legionnaires. With advanced persistent threats (APTs) on the rise following Stuxnet, government branches and agencies are required, more than ever, to follow several standards, policies and procedures to reduce the likelihood of a breach. Attack vectors today are very advanced and are going to continue to get more and more advanced as security controls advance. This creates a need for networks and systems to be in an updated and secured state in a launch control system environment. FISMA is a law that is mandated by the government to follow when government agencies secure networks and devices. My role on this project is to ensure network devices and systems are in compliance with NIST, as outlined in FISMA. I will achieve this by providing assistance with security plan documentation and collection, system hardware and software inventory, malicious code and malware scanning and configuration of network devices i.e. routers and IDSsIPSs. In addition I will be completing security assessments on software and hardware, vulnerability assessments and reporting, conducting patch management and risk assessments. A guideline that will help with compliance with NIST is the SANS Top 20 Critical Controls. SANS Top 20 Critical Controls as well as numerous security tools, security software and the conduction of research will be used to successfully complete the tasks given to me. This will ensure compliance with FISMA and NIST, secure systems and a secured network. By the end of this project, I hope to have carried out stated above as well as gain an immense knowledge about compliance, security tools, networks and network devices, policies and procedures.

computer information security

Automated monitor and control for deep space network subsystems

The problem of automating monitor and control loops for Deep Space Network (DSN) subsystems is considered and an overview of currently available automation techniques is given. The use of standard numerical models, knowledge-based systems, and neural networks is considered. It is argued that none of these techniques alone possess sufficient generality to deal with the demands imposed by the DSN environment. However, it is shown that schemes that integrate the better aspects of each approach and are referenced to a formal system model show considerable promise, although such an integrated technology is not yet available for implementation. Frequent reference is made to the receiver subsystem since this work was largely motivated by experience in developing an automated monitor and control loop for the advanced receiver.

Smyth, P.

IT Security Support for the Spaceport Command Control Systems Development Ground Support Development Operations

Security is one of the most if not the most important areas today. After the several attacks on the United States, security everywhere has heightened from airports to the communication among the military branches legionnaires. With advanced persistent threats (APT's) on the rise following Stuxnet, government branches and agencies are required, more than ever, to follow several standards, policies and procedures to reduce the likelihood of a breach. Attack vectors today are very advanced and are going to continue to get more and more advanced as security controls advance. This creates a need for networks and systems to be in an updated and secured state in a launch control system environment. FISMA is a law that is mandated by the government to follow when government agencies secure networks and devices. My role on this project is to ensure network devices and systems are in compliance with NIST, as outlined in FISMA. I will achieve this by providing assistance with security plan documentation and collection, system hardware and software inventory, malicious code and malware scanning, and configuration of network devices i.e. routers and IDS's/IPS's. In addition, I will be completing security assessments on software and hardware, vulnerability assessments and reporting, and conducting patch management and risk assessments. A guideline that will help with compliance with NIST is the SANS Top 20 Critical Controls. SANS Top 20 Critical Controls as well as numerous security tools, security software and the conduction of research will be used to successfully complete the tasks given to me. This will ensure compliance with FISMA and NIST, secure systems and a secured network. By the end of this project, I hope to have carried out the tasks stated above as well as gain an immense knowledge about compliance, security tools, networks and network devices, as well as policies and procedures.

security

Network Analysis of Rodent Transcriptomes in Spaceflight

Network analysis methods leverage prior knowledge of cellular systems and the statistical and conceptual relationships between analyte measurements to determine gene connectivity. Correlation and conditional metrics are used to infer a network topology and provide a systems-level context for cellular responses. Integration across multiple experimental conditions and omics domains can reveal the regulatory mechanisms that underlie gene expression. GeneLab has assembled rich multi-omic (transcriptomics, proteomics, epigenomics, and epitranscriptomics) datasets for multiple murine tissues from the Rodent Research 1 (RR-1) experiment. RR-1 assesses the impact of 37 days of spaceflight on gene expression across a variety of tissue types, such as adrenal glands, quadriceps, gastrocnemius, tibalius anterior, extensor digitorum longus, soleus, eye, and kidney. Network analysis is particularly useful for RR-1 -omics datasets because it reinforces subtle relationships that may be overlooked in isolated analyses and subdues confounding factors. Our objective is to use network analysis to determine potential target nodes for therapeutic intervention and identify similarities with existing disease models. Multiple network algorithms are used for a higher confidence consensus.

genomics

Airspace Research and Development Portfolio Assessment of Urban Air Mobility using Knowledge Graph Data Science

National Aeronautics and Space Administration (NASA) is spearheading an innovative digital engineering approach to integrate, communicate, and facilitate the research of Urban Air Mobility (UAM) operations. The UAM vision is one in which advanced technologies and new operational procedures enable practical and cost-effective air transport as an integrated mode of movement of people and goods throughout metropolitan areas. To safely support UAM operations at scale in the National Airspace System (NAS), NASA’s Air Traffic Management-Exploration (ATM-X) project has been conducting research that evolves the UAM air traffic management system towards a highly automated and operationally flexible system of the future. The complexity of UAM airspace evolution to accommodate the increasing tempo of UAM operations over time is managed through the UAM airspace research roadmap, which is a system engineering approach to the R&D of complex system-of-systems, where system’s interdependencies make it nearly impossible to define requirements for individual elements of the system in isolation. These interdependencies form a knowledge graph (node-link network) with a highly complex structure far beyond the human user’s ability to extract insights for project management’s research portfolio assessment. This study applies advanced data analytics in knowledge graph to the UAM knowledge graph to facilitate the portfolio assessment.

ATM

Airspace Research and Development Portfolio Assessment of Urban Air Mobility using Knowledge Graph Data Science

National Aeronautics and Space Administration (NASA) is spearheading an innovative digital engineering approach to integrate, communicate, and facilitate the research of Urban Air Mobility (UAM) operations. The UAM vision is one in which advanced technologies and new operational procedures enable practical and cost-effective air transport as an integrated mode of movement of people and goods throughout metropolitan areas. To safely support UAM operations at scale in the National Airspace System (NAS), NASA’s Air Traffic Management-Exploration (ATM-X) project has been conducting research that evolves the UAM air traffic management system towards a highly automated and operationally flexible system of the future. The complexity of UAM airspace evolution to accommodate the increasing tempo of UAM operations over time is managed through the UAM airspace research roadmap, which is a system engineering approach to the R&D of complex system-of-systems, where system’s interdependencies make it nearly impossible to define requirements for individual elements of the system in isolation. These interdependencies form a knowledge graph (node-link network) with a highly complex structure far beyond the human user’s ability to extract insights for project management’s research portfolio assessment. This study applies advanced data analytics in knowledge graph to the UAM knowledge graph to facilitate the portfolio assessment.

ATM

A prototype Upper Atmospheric Research Collaboratory (UARC)

The National Collaboratory concept has great potential for enabling 'critical mass' working groups and highly interdisciplinary research projects. We report here on a new program to build a prototype collaboratory using the Sondrestrom Upper Atmospheric Research Facility in Kangerlussuaq, Greenland and a group of associated scientists. The Upper Atmospheric Research Collaboratory (UARC) is a joint venture of researchers in upper atmospheric and space science, computer science, and behavioral science to develop a testbed for collaborative remote research. We define the 'collaboratory' as an advanced information technology environment which enables teams to work together over distance and time on a wide variety of intellectual tasks. It provides: (1) human-to-human communications using shared computer tools and work spaces; (2) group access and use of a network of information, data, and knowledge sources; and (3) remote access and control of instruments for data acquisition. The UARC testbed is being implemented to support a distributed community of space scientists so that they have network access to the remote instrument facility in Kangerlussuaq and are able to interact among geographically distributed locations. The goal is to enable them to use the UARC rather than physical travel to Greenland to conduct team research campaigns. Even on short notice through the collaboratory from their home institutions, participants will be able to meet together to operate a battery of remote interactive observations and to acquire, process, and interpret the data.

Clauer, C. R.

Satellite-Derived Imagery and Transfer Learning: A Novel Technique for Land Cover Classification

Land cover classification is a continuing research topic due to its relevance to land use and land cover changes from impacts such as climate change, agriculture, urbanization, and hazardous weather. Simple access to frequently changing land cover classifications could provide knowledge and decision support to various researchers and agencies across the globe for each of above-mentioned and related influences. This research aims to provide a novel technique for land cover classification of remote sensing imagery; harnessing Artificial Neural Networks and transfer learning (TL). Knowledge sharing techniques within machine learning are typically utilized when training datasets are sparse or transitions between data modalities is required. In this case, two data modalities, multi and hyperspectral data, are considered for knowledge transfer. The large number of continuous spectral bands available from hyperspectral sensors typically provide increased sophisticated land classification capability compared to more traditional multispectral imagery with limited discrete spectral bands. However, large-scale, frequent access to hyperspectral imagery is relatively limited. The proposed classification technique would therefore prove useful in regions in which hyperspectral data are not readily available for classification but multispectral data are. Image segmentation models are trained on each multi and hyperspectral datasets. Knowledge sharing techniques are then applied to each model to understand what knowledge, if any, is gained when moving between the data modalities. The datasets utilized for training and testing a U-Net model include the European Space Agency’s multispectral imager Sentinel-2 and the hyperspectral German Aerospace Center’s Earth Sensing Imaging Spectrometer (DESIS). Initially, only two classes, land and water, are classified for simplicity. However, more complex classes can be added if knowledge sharing is successful. The workflow for image classification through supervised image segmentation with a U-Net model will be discussed along with metrics calculated before and after TL for both Sentinel-2 and DESIS data are applied. Additionally, future steps to advance the sophistication of this technique as well as other applicable methodologies will be explored.

Emily Foshee

Knowledge based programming at KSC

Various KSC knowledge-based systems projects are discussed. The objectives of the knowledge-based automatic test equipment and Shuttle connector analysis network projects are described. It is observed that knowledge-based programs must handle factual and expert knowledge; the characteristics of these two types of knowledge are examined. Applications for the knowledge-based programming technique are considered.

Tulley, J. H., Jr.

Multi-head physics-informed neural networks for learning functional priors and uncertainty quantification

In numerous applications, the integration of prior knowledge and historical information is essential, particularly for tasks requiring the solution of ordinary or partial differential equations (ODEs/PDEs) in data-sparse or noisy environments. For instance, achieving accurate solutions to time-dependent PDEs with limited initial condition measurements necessitates an effective strategy for embedding prior knowledge. Hard-parameter sharing architectures in neural networks (NNs) have demonstrated success in both traditional and scientific machine learning domains, facilitating the learning of informative representations. Here, in this study, we introduce a novel, yet efficient, method to enhance physics-informed neural networks (PINNs) by incorporating a multi-head structure that enables the learning of functional priors from both empirical data and governing physical laws. This prior information can then be used to address data sparsity and high-level noise in solving ODE/PDE problems with uncertainty quantification (UQ). The approach, termed Multi-Head PINN (MH-PINN), consists of a shared body NN and multiple head NNs, each corresponding to an individual PINN instance. Our framework for functional prior learning is carried out in two stages: (1) training the MH-PINNs to develop a shared body NN alongside multiple head NNs, and (2) employing these trained head NNs to estimate a prior distribution through a normalizing flow-based density estimator. The learned functional prior can then be applied as a regularization mechanism in deterministic contexts or as an informative prior within a Bayesian inference framework, aiding in the resolution of subsequent ODE/PDE tasks. We evaluate the efficacy of MH-PINNs across five benchmark problems, including a high-dimensional parametric PDE, all characterized by data sparsity or substantial noise levels. Our findings reveal that MH-PINNs deliver accurate solutions and robust UQ, demonstrating adaptability across a range of complex and challenging scenarios.

Bayesian inference

Semantic Analysis of Email Using Domain Ontologies and WordNet

The problem of capturing and accessing knowledge in paper form has been supplanted by a problem of providing structure to vast amounts of electronic information. Systems that can construct semantic links for natural language documents like email messages automatically will be a crucial element of semantic email tools. We have designed an information extraction process that can leverage the knowledge already contained in an existing semantic web, recognizing references in email to existing nodes in a network of ontology instances by using linguistic knowledge and knowledge of the structure of the semantic web. We developed a heuristic score that uses several forms of evidence to detect references in email to existing nodes in the Semanticorganizer repository's network. While these scores cannot directly support automated probabilistic inference, they can be used to rank nodes by relevance and link those deemed most relevant to email messages.

Berrios, Daniel C.