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At least 109 records · Page 6
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Potential Biocontrol Activities of Populus Endophytes against Several Plant Pathogens Using Different Inhibitory Mechanisms

The plant microbiome can be used to bolster plant defense against abiotic and biotic stresses. Some strains of endophytes, the microorganisms within plants, can directly inhibit the growth of plant fungal pathogens. A previously isolated endophyte from wild Populus (poplar), WPB of the species Burkholderia vietnamiensis, had robust in vitro antifungal activity against pathogen strains that are highly virulent and of concern to Pacific Northwest agriculture: Rhizoctonia solani AG-8, Fusarium culmorum 70110023, and Gaemannomyces graminis var. tritici (Ggt) ARS-A1, as well as activity against the oomycete, Pythium ultimum 217. A direct screening method was developed for isolation of additional anti-fungal endophytes from wild poplar extracts. By challenging pathogens directly with dilute extracts, eleven isolates were found to be inhibitory to at least two plant pathogen strains and were therefore chosen for further characterization. Genomic analysis was conducted to determine if these endophyte strains harbored genes known to be involved in antimicrobial activities. The newly isolated Bacillus strains had gene clusters for production of bacillomycin, fengicyn, and bacillibactin, while the gene cluster for the synthesis of sessilin, viscosin and tolaasin were found in the Pseudomonas strains. The biosynthesis gene cluster for occidiofungin (ocf) was present in the Burkholderia vietnamiensis WPB genome, and an ocf deletion mutant lost inhibitory activity against 3 of the 4 pathogens. The new isolates lacked the gene cluster for occidiofungin implying they employ different modes of action. Other symbiotic traits including nitrogen fixation, phosphate solubilization, and the production of auxins and siderophores were investigated. Although it will be necessary to conduct in vivo tests of the candidates with pathogen-infected agricultural crops, the wild poplar tree microbiome may be a rich source of beneficial endophyte strains with potential for biocontrol applications against a variety of pathogens and utilizing varying modes of action.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Higher loadings of Pt single atoms and clusters over reducible metal oxides: application to C–O bond activation

We develop higher loadings of isolated noble metal atoms and clusters on a mildly reducible metal oxide. Here we demonstrate the approach for Pt supported on TiO 2 and confirmed it by XRD, AC-HAADF-STEM, CO-FTIR, XAS, and XPS. Density functional theory calculations rationalize the experimental stability and the IR shifts using mixtures of CH 3 I and CO. The redispersed catalysts are thermally stable in inert gas or H 2 and afford enhanced selectivity and activity in hydrodeoxygenation reactions compared to metal nanoparticles by creating surface oxygen vacancies that promote C–O cleavage without side reactions. Higher metal loadings, e.g., 1%Pt/TiO 2 , on the oxide surface profoundly increase the activity of the bare oxide catalyst tenfold compared to ultra-low loadings typically used for single atom catalysis.

36 MATERIALS SCIENCE↗
DOE OSTI2026

Ammonia Synthesis by a Supported Iron-Lithium Hydride Precatalyst: Silicon Nitride Support Enabled Synthesis and Nitrogen Reservoir Dynamics

Amorphous silicon nitride (Si 3 N 4 ) is an unconventional support for the chemisorption of organometallic complexes and offers potential improvements in active site stability and reactivity through enhanced metal-nitrogen covalency and orbital overlap in bonding interactions with the nitride framework. Here, we show that silicon nitride-supported iron mesityl complexes display divergent reactivity compared to their silica-supported homologues, resisting metallic particle formation under reducing pretreatment conditions (exposure to excess organolithium reagents) and maintaining active iron/lithium speciation under ammonia synthesis conditions that is absent on the oxide support. When the organometallic iron complex on silicon nitride is exposed to excess n-butyllithium, iron remains isolated, catalyzing the conversion of butyllithium to lithium hydride, resulting in a divalent iron site in a polyhydride environment. In contrast, the silica-supported complex is converted to reduced iron clusters without forming persistent isolated hydrides. These structural differences lead to markedly different catalytic behaviors under ammonia synthesis conditions. The Li/Fe/Si 3 N 4 catalyst is highly active (7.5 mol NH 3 /mol Fe/h at 300 °C, 10 bar, or 46 mol NH 3 /mol Fe/h at 400 °C, 10 bar), while both the silica-supported analog and the nonlithiated Si 3 N 4 -supported species are inactive. Notably, this activity is enhanced relative to previously reported iron-lithium hydride composite catalysts (0.43–4.1 mol NH 3 /mol Fe/h at 300 °C, 10 bar) and relative to the industrial benchmark promoted iron catalyst KM1 (3.0 mol NH 3 /mol Fe/h at 400 °C, 10 bar). The catalyst activation and LiH/LiNH x nitrogen reservoir dynamics for Li/Fe/Si 3 N 4 are studied by X-ray Absorption, Mössbauer, and in situ DRIFT spectroscopies and isotopic exchange kinetics.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

Application of prophage sequence analysis to investigate a disease outbreak involving Salmonella Adjame, a rare serovar and implications for the population structure

Introduction Outbreak investigation of foodborne salmonellosis is hindered when the food source is contaminated by multiple strains of Salmonella , creating difficulties matching an incriminated organism recovered from patients with the specific strain in the suspect food. An outbreak of the rare Salmonella Adjame was caused by multiple strains of the organism as revealed by single-nucleotide polymorphism (SNP) variation. The use of highly discriminatory prophage analysis to characterize strains of Salmonella should enable a more precise strain characterization and aid the investigation of foodborne salmonellosis. Methods We have carried out genomic analysis of S. Adjame strains recovered during the course of a recent outbreak and compared them with other strains of the organism ( n = 38 strains), using SNPs to evaluate strain differences present in the core genome, and prophage sequence typing (PST) to evaluate the accessory genome. Phylogenetic analyses were performed using both total prophage content and conserved prophages. Results The PST analysis of the S. Adjame isolates showed a high degree of strain heterogeneity. We observed small clusters made up of 2-6 isolates ( n = 27) and singletons ( n = 11) in stark contrast with the three clusters observed by SNP analysis. In total, we detected 24 prophages of which only four were highly prevalent, namely: Entero_p88 (36/38 strains), Salmon_SEN34 (35/38 strains), Burkho_phiE255 (33/38 strains) and Edward_GF (28/38 strains). Despite the marked strain diversity seen with prophage analysis, the distribution of the four most common prophages matched the clustering observed using core genome. Discussion Mutations in the core and accessory genomes of S. Adjame have shed light on the evolutionary relationships among the Adjame strains and demonstrated a convergence of the variations observed in both fractions of the genome. We conclude that core and accessory genomes analyses should be adopted in foodborne bacteria outbreak investigations to provide a more accurate strain description and facilitate reliable matching of isolates from patients and incriminated food sources. The outcomes should translate to a better understanding of the microbial population structure and an 46 improved source attribution in foodborne illnesses.

Gao, Ruimin↗
NASA NTRS1978

26.3 MHz radio source survey. III - Correlation with extragalactic X-ray sources

The correlation between extragalactic X-ray sources and radio sources in a 26.3-MHz catalog is studied. A list of reliably identified sources is developed by examining X-ray, optical, and radio data for those candidate objects that are in or near the X-ray error boxes. The source 3UR 0432+05 is identified with 3C 120, 3UR 1555+27 (identified with A2142) is shown to be a steep-spectrum radio source, and it is found that 86% of the high-galactic-latitude sources can be reliably identified when the X-ray source error areas are no more than 1 sq deg. The results also indicate that: (1) X-ray sources identified with clusters of galaxies as a whole, with individual galaxies in clusters, and with separate isolated galaxies have similar decametric properties in that their spectral indices and radio luminosities fall in the same range; (2) there is a Bautz-Morgan dependence of both the X-ray and the decametric luminosities of clusters and of individual objects in clusters; and (3) the X-ray luminosity of all except compact sources appears to be approximately proportional to the decametric luminosity.

Erickson, W. C.↗
DOE OSTI2023

Avirulent Isolates of Penicillium chrysogenum to Control the Blue Mold of Apple Caused by P. expansum

Blue mold is an economically significant postharvest disease of pome fruit that is primarily caused by Penicillium expansum. To manage this disease and sustain product quality, novel decay intervention strategies are needed that also maintain long-term efficacy. Biocontrol organisms and natural products are promising tools for managing postharvest diseases. Here, two Penicillium chrysogenum isolates, 404 and 413, were investigated as potential biocontrol agents against P. expansum in apple. Notably, 404 and 413 were non-pathogenic in apple, yet they grew vigorously in vitro when compared to the highly aggressive P. expansum R19 and Pe21 isolates. Whole-genome sequencing and species-specific barcoding identified both strains as P. chrysogenum. Each P. chrysogenum strain was inoculated in apple with the subsequent co-inoculation of R19 or Pe21 simultaneously, 3, or 7 days after prior inoculation with 404 or 413. The co-inoculation of these isolates showed reduced decay incidence and severity, with the most significant reduction from the longer establishment of P. chrysogenum. In vitro growth showed no antagonism between species, further suggesting competitive niche colonization as the mode of action for decay reduction. Both P. chrysogenum isolates had incomplete patulin gene clusters but tolerated patulin treatment. Finally, hygromycin resistance was observed for both P. chrysogenum isolates, yet they are not multiresistant to apple postharvest fungicides. Overall, we demonstrate the translative potential of P. chrysogenum to serve as an effective biocontrol agent against blue mold decay in apples, pending practical optimization and formulation.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Detecting new physics as novelty — Complementarity matters

Novelty detection is a task of machine learning that aims at detecting novel events without a prior knowledge. In particular, its techniques can be applied to detect unexpected signals from new phenomena at colliders. In this paper, we develop an analysis scheme that exploits the complementarity, originally studied in ref. [1], between isolation-based and clustering-based novelty evaluators. This approach can significantly improve the performance and overall applicability of novelty detection at colliders, which we demonstrate using a variety of two dimensional Gaussian samples mimicking collider events. As a further proof of principle, we subsequently apply this scheme to the detection of two significantly different signals at the LHC featuring a $t\bar{t}γγ$ final state: $t\bar{t}h$, giving a narrow resonance in the diphoton mass spectrum, and gravity-mediated supersymmetry, resulting in broad distributions at high transverse momentum. Compared to existing dedicated searches at the LHC, the sensitivities for detecting both signals are found to be encouraging.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

Computational study of the electrostatic potential and charges of multivalent ionic liquid molecules

The electrostatic interactions in ionic liquids (ILs) can be difficult to quantify, but this information is very valuable for improving intermolecular potentials for performing molecular-level simulations. Although polarizable forcefields can provide improved accuracy, the computational efficiency of fixed charge molecular models is often preferred for larger systems. Here, we propose a multi-scale screening approach for analyzing the charge scaling behavior and other electrostatic properties of ILs, which is more attainable than previous analysis methods that rely on the IL crystalline structures. Based on isolated molecules and small clusters, we study the electrostatic potential properties and charges of multivalent IL molecules using density-functional theory calculations and ab initio molecular dynamics simulations. The charges of the IL molecules are calculated and compared using several different charge estimation techniques. Although there are some differences among the estimated partial charges on the atoms, the total anion and cation charges are very similar. In conclusion, the charge scaling factors are substantial, and they are only slightly affected by the IL cluster size model.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

A quantitative comparison between velocity dependent SIDM cross-sections constrained by the gravothermal and isothermal models

One necessary step for probing the nature of self-interacting dark matter (SIDM) particles with astrophysical observations is to pin down any possible velocity dependence in the SIDM cross-section. Major challenges for achieving this goal include eliminating, or mitigating, the impact of the baryonic components and tidal effects within the dark matter halos of interest – the effects of these processes can be highly degenerate with those of dark matter self-interactions at small scales. In this work, we select 9 isolated galaxies and brightest cluster galaxies (BCGs) with baryonic components small enough such that the baryonic gravitational potentials do not significantly influence the halo gravothermal evolution processes. We then constrain the parameters of Rutherford and Møller scattering cross-section models with the measured rotation curves and stellar kinematics through the gravothermal fluid formalism and isothermal method. Cross-sections constrained by the two methods are consistent at $1\sigma$ confidence level, but the isothermal method prefers cross-sections greater than the gravothermal approach constraints by a factor of ~ 3.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Characterization of the inner edge of the neutron star crust

The poorly known crustal equation of state plays a critical role in many observational phenomena associated with a neutron star. Here using semiclassical Monte Carlo simulations, we explore the possible configurations of the inner edge of the neutron star crust for a variety of baryon densities and proton fractions. Applying the Kirkwood-Buff theory to these two-component systems, we observe how the isothermal compressibility reaches a maximum when isolated nonsymmetric (or quasispherical) clusters are formed in an extremely dilute neutron gas. To determine the neutron fraction, we suggest a geometrical model based on the behavior of the proton-neutron pair correlation function. Accordingly, the equation of state of the inner crust is calculated, illustrating that the nuclear energy in β equilibrium follows a power-law behavior with baryon density. As a possible astrophysical outcome of this study, our results could help refine the mass-radius relation. Finally, our results pave the way towards further investigations of the impact of the proton-neutron pair correlation function on transport properties within the neutron star crust.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
NASA NTRS1974

Solar wind and micrometeorite alteration of the lunar regolith

Developments in the understanding of reduction processes which occur in the lunar regolith as a result of solar-wind bombardment and micrometeorite impacts are discussed. The mechanism is described by which water released during reduction is removed from the lunar surface, and the possible contribution of solar-wind sputtering to the reduction process is considered. It is shown that the overall reduction efficiency of incoming hydrogen ions may reach several per cent, which is sufficient to produce all the metallic iron observed in the regolith. Mossbauer spectroscopic data on the amount of metallic iron present as isolated atoms or small clusters in reduced grain surfaces are presented together with data on the metallic iron content of fines samples obtained by Mossbauer spectroscopy, ferromagnetic resonance, and scanning as well as transmission electron microscopy. A portable magnetic probe is described which has been designed for determining surface-exposure age profiles in intact lunar core and drive-tube samples.

Housley, R. M.↗
NASA NTRS1975

Metal-to-metal charge transfer transitions - Interpretation of visible-region spectra of the moon and lunar materials

Prominent bands in the spectral profiles of Fe-Ti phases in lunar samples have been attributed to charge-transfer transitions between Fe and Ti cations, and a model is presented for calculating charge transfer energies from energy levels computed by the SCF-X(alpha) scattered wave molecular orbital method for isolated MO6 octahedral coordination clusters containing Fe(2+), Fe(3+), Ti(3+), and Ti(4+) cations. The calculated charge transfer energy for the Fe(2+) to Ti(4+) transition correlates well with a measured spectral feature around 0.6 micron in ilmenite, and, since ilmenite is a major constituent of mare basalts and dark-mantling material, the observed darkness and blueness of the regolith in lunar black spots is attributed primarily to this transition. The Ti(3+) to Ti(4+) transition is thought to contribute to some phases.

Loeffler, B. M.↗
NASA NTRS1979

HEAO A-2 extragalactic results

Results from the HEAO A-2 experiment concerning the extragalactic X-ray sky are discussed. All-sky maps of hard X-ray sources detected are presented reflecting the temporal variability of the sources that make up the extragalactic X-ray sky. Most of the identified extragalactic objects are not clusters of galaxies but isolated galaxies. Spectra for sources representing classes of active galz galaxies, BL Lacertae objects, and N galaxies are discussed in order of luminosity.

Boldt, E. A.↗
NASA NTRS1987

Curvilinear ridges and related features in southwest Cydonia Mensae, Mars

Examined is a region on Mars in southwest Cydonia Mensae (32 deg lat., 17 deg long.) just northwest of the lowland/upland boundary escarpment. The dominant morphological features in this region are the clusters of large massifs and plateau outliers (PI), knobby material (K), and smooth lowland plains (Ps). Surrounding the clusters and linking many isolated knobs is a system of curvilinear ridges and arcuate terrain boundaries which tend to separate the massifs and knobs from the smooth plains. Curvilinear ridges are arcuate to nearly linear and smoother in plan than wrinkle ridges and show no apparent correlation with regional structural grain. They are typically 5 to 10 km long but can range from as little as 2 or 3 km to greater than 50 km long. The widths vary from about 100 m to as much as 2 km. Curvilinear ridges are most numerous within 100 km of the lowland/upland boundary escarpment and are associated with massifs and knobby terrain. Arcuate terrain boundaries appear between units of different apparent albedo or arcuate breaks in slope.

Parker, Timothy J.↗
NASA NTRS1995

Color evolution from z = 0 to z = 1

Rest frame Stroemgren photometry (3500 A, 4100 A, 4750 A, and 5500 A) is presented for 509 galaxies in 17 rich clusters between z = 0 and z = 1 as a test of color evolution. Our observations confirm a strong, rest frame, Butcher-Oemler effect where the fraction of blue galaxies increases from 20% at z = 0.4 to 80% at z = 0.9. We also find that a majority of these blue cluster galaxies are composed of normal disk or post-starburst systems based on color criteria. When comparing our colors to the morphological results from Hubble Space Telescope HST imaging, we propose that the blue cluster galaxies are a population of late-type, low surface brightness objects which fade and are then destroyed by the cluster tidal field. After isolating the red objects from Butcher-Oemler objects, we have compared the mean color of these old, non-star-forming objects with spectral energy distribution models in the literature as a test for passive galaxy evolution in ellipticals. We find good agreement with single-burst models which predict a mean epoch of galaxy formation at z = 5. Tracing the red envelope for ellipticals places the earliest epoch of galaxy formation at z = 10.

Rakos, Karl D.↗
DOE OSTI2024

Unveiling the Arsenal of Apple Bitter Rot Fungi: Comparative Genomics Identifies Candidate Effectors, CAZymes, and Biosynthetic Gene Clusters in Colletotrichum Species

The bitter rot of apple is caused by Colletotrichum spp. and is a serious pre-harvest disease that can manifest in postharvest losses on harvested fruit. In this study, we obtained genome sequences from four different species, C. chrysophilum, C. noveboracense, C. nupharicola, and C. fioriniae, that infect apple and cause diseases on other fruits, vegetables, and flowers. Our genomic data were obtained from isolates/species that have not yet been sequenced and represent geographic-specific regions. Genome sequencing allowed for the construction of phylogenetic trees, which corroborated the overall concordance observed in prior MLST studies. Bioinformatic pipelines were used to discover CAZyme, effector, and secondary metabolic (SM) gene clusters in all nine Colletotrichum isolates. We found redundancy and a high level of similarity across species regarding CAZyme classes and predicted cytoplastic and apoplastic effectors. SM gene clusters displayed the most diversity in type and the most common cluster was one that encodes genes involved in the production of alternapyrone. Our study provides a solid platform to identify targets for functional studies that underpin pathogenicity, virulence, and/or quiescence that can be targeted for the development of new control strategies. With these new genomics resources, exploration via omics-based technologies using these isolates will help ascertain the biological underpinnings of their widespread success and observed geographic dominance in specific areas throughout the country.

59 BASIC BIOLOGICAL SCIENCES↗