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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 109 records · Page 6
All sourcesNASA NTRSDOE OSTI
NASA NTRS1992

A Spatial Analysis and Modeling System (SAMS) for environment management

This is a proposal to develop a uniform global environmental data gathering and distribution system to support the calibration and validation of remotely sensed data. SAMS is based on an enhanced version of FE MA's Integrated Emergency Management Information Systems and the Department of Defense's Air Land Battlefield Environment Software Systems. This system consists of state-of-the-art graphics and visualization techniques, simulation models, database management and expert systems for conducting environmental and disaster preparedness studies. This software package will be integrated into various Landsat and UNEP-GRID stations which are planned to become direct readout stations during the EOS timeframe. This system would be implemented as a pilot program to support the Tropical Rainfall Measuring Mission (TRMM). This will be a joint NASA-FEMA-University-Industry project.

Vermillion, Charles H.↗
NASA NTRS1993

A Spatial Analysis and Modeling System (SAMS) for environment management

This is a proposal to develop a uniform global environmental data gathering and distribution system to support the calibration and validation of remotely sensed data. SAMS is based on an enhanced version of FEMA's Integrated Emergency Management Information Systems and the Department of Defense's Air land Battlefield Environment Software Systems. This system consists of state-of-the-art graphics and visualization techniques, simulation models, database management and expert systems for conducting environmental and disaster preparedness studies. This software package will be integrated into various Landsat and UNEP-GRID stations which are planned to become direct readout stations during the EOS (Earth Observing System) timeframe. This system would be implemented as a pilot program to support the Tropical Rainfall Measuring Mission (TRMM). This will be a joint NASA-FEMA-University-Industry project.

Stetina, Fran↗
NASA NTRS1994

The Global Emergency Observation and Warning System

Based on an extensive characterization of natural hazards, and an evaluation of their impacts on humanity, a set of functional technical requirements for a global warning and relief system was developed. Since no technological breakthroughs are required to implement a global system capable of performing the functions required to provide sufficient information for prevention, preparedness, warning, and relief from natural disaster effects, a system is proposed which would combine the elements of remote sensing, data processing, information distribution, and communications support on a global scale for disaster mitigation.

Bukley, Angelia P.↗
DOE OSTI2023

USA Structures Phase 2 Technical Report

Spatially accurate data of critical infrastructures are essential to effective disaster preparedness, response, and recovery. Precise location and building outlines provide the most accurate data for characterizing impacts of hazards and effectively serve response, recovery, and mitigation efforts, as well as the people affected by the disaster. Since 2017, Oak Ridge National Laboratory (ORNL) has partnered with the Federal Emergency Management Agency (FEMA) to establish a comprehensive and open source national database of building footprints called USA Structures. Several key attributions have been added to the dataset to support rapid disaster response. In the most recent update to the dataset, ORNL developed two additional attributions to the structures, leveraging several authoritative data sources.

42 ENGINEERING↗
NASA NTRS2018

NASA’s Mid-Atlantic Communities and Areas at Intensive Risk Demonstration: Translating Compounding Hazards to Societal Risk

Remote sensing provides a unique perspective on our dynamic planet, tracking changes and revealing the course of complex interactions. Long term monitoring and targeted observation combine with modeling and mapping to provide increased awareness of hydro-meteorological and geological hazards. Disasters often follow hazards and the goal of NASA’s Disasters Program is to look at the earth as a highly coupled system to reduce risk and enable resilience. Remote sensing and geospatial science are used as tools to help answer critical questions that inform decisions. Data is not the same as information, nor does understanding of processes necessarily translate into decision support for disaster preparedness, response and recovery. Accordingly, NASA is engaging the scientific and decision-support communities to apply remote sensing, modeling, and related applications in Communities and Areas at Intensive Risk (CAIR). In 2017, NASA’s Applied Sciences Disasters Program hosted a regional workshop to explore these issues with particular focus on coastal Virginia and North Carolina. The workshop brought together partners in academia, emergency management, and scientists from NASA and partnering federal agencies to explore capabilities among the team that could improve understanding of the physical processes related to these hazards, their potential impact to changing communities, and to identify methodologies for supporting emergency response and risk mitigation. The resulting initiative, the mid-Atlantic CAIR project, demonstrates the ability to integrate satellite derived earth observations and physical models into actionable, trusted knowledge. Severe storms and associated storm surge, sea level rise, and land subsidence coupled with increasing populations and densely populated, aging critical infrastructure often leave coastal regions and their communities extremely vulnerable. The integration of observations and models allow for a comprehensive understanding of the compounding risk experienced in coastal regions and enables individuals in all positions make risk-informed decisions. This initiative uses a representative storm surge case as a baseline to produce flood inundation maps. These maps predict building level impacts at current day and for sea level rise (SLR) and subsidence scenarios of the future in order to inform critical decisions at both the tactical and strategic levels. To accomplish this analysis, the mid-Atlantic CAIR project brings together Federal research activities with academia to examine coastal hazards in multiple ways: 1) reanalysis of impacts from 2011 Hurricane Irene, using numerical weather modeling in combination with coastal surge and hydrodynamic, urban inundation modeling to evaluate combined impact scenarios considering SLR and subsidence, 2) remote sensing of flood extent from available optical imagery, 3) adding value to remotely sensed flood maps through depth predictions, and 4) examining coastal subsidence as measured through time-series analysis of synthetic aperture radar observations. Efforts and results are published via ArcGIS story maps to communicate neighborhoods and infrastructure most vulnerable to changing conditions. Story map features enable time-aware flood mapping using hydrodynamic models, photographic comparison of flooding following Hurricane Irene, as well as visualization of heightened risk in the future due to SLR and land subsidence.

Rogers, Laura↗
DOE OSTI2025

Scenario Generation for Built Environment Decision Support under Uncertainty: Case Studies of Airflow Modeling and Climate-Resilient Infrastructure System Design

When confronted with unforeseen challenges, practicing informed decision making is crucial for enhancing resilience in the built environment. While scan-to-building information modeling (BIM) is a well-established approach for creating detailed digital representations of physical assets, its application in assessing and improving infrastructure resilience remains underexplored. This study addresses this gap by proposing a novel application of scan-to-BIM, namely, scan-to-BIM-to-digital twin (S-BIM-DT) workflow. By integrating reality capture and digital twin technologies, this workflow creates continuously updated and accurate digital representations of physical assets, enabling the generation of various scenarios. Unlike traditional methods, the S BIM-DT workflow facilitates continuous model refinement, supporting informed resilience strategies. By combining these technologies into a cohesive process, the workflow facilitates decision making under uncertainty, enabling stakeholders to evaluate and respond to various scenarios effectively. We demonstrate the implementation of the S-BIM-DT workflow through two use cases that highlight its capability to enhance resilience at different scales. The first use case involves the Combined Transportation, Emergency, and Communications Center (CTECC) in Austin, Texas. BIM-enriched computational fluid dynamics (CFD) modeling simulates airflow and develops alternative scenarios for optimizing the heating, ventilation, and air conditioning (HVAC) systems. This approach enhances resilience against airborne health threats in a postCOVID context. The second use case focuses on designated areas within Beaumont, Texas, as part of the Southeast Texas Urban Integrated Field Laboratory (SETx-UIFL) research. By developing inundation maps to assess extreme weather events, this modeling aids in preparedness efforts and informs the development of climate-resilient infrastructure in vulnerable neighborhoods. Results indicate that the S-BIM-DT workflow effectively generates scenarios that enhance resilience in the built environment by facilitating informed decision making. Furthermore, this study serves as a bridge between advanced scan-to-BIM methodologies and the practical strategies needed to improve built infrastructure resilience.

Built environment↗
DOE OSTI2021

Redefining Net-Zero Water for Resilient Aquifers

Groundwater has long been a critical source of potable water, supplying one-third of all global water withdrawals and providing strategic reserves in times of drought (Konikow, 2012; Famiglietti, 2014). The risk in relying on groundwater is that it is often pumped at rates far greater than it can be naturally replenished. With increasing population and a changing climate, the depletion of potable water supplies has become an ever-growing concern (Srinivasan et al., 2012). Recently, the concept of “resilience” has been applied to groundwater, leaving many questions to be explored in terms of what resilience should mean for aquifers (Foster and MacDonald, 2014; Grönwall and Oduro-Kwarteng, 2017). The term is commonly used to indicate resilience to impacts of climate change specifically, but here we consider resilience in the context of more general water insecurity. Relatedly, the concept of “sustainable yield” has emerged in an attempt to determine a metric that can ensure the long-term resilience of groundwater systems, but the definition is fraught with inherent uncertainties and its quantification poses challenges (Rudestam and Langridge, 2014; Grönwall and Oduro-Kwarteng, 2017). At the heart of these concepts is a focus on sustainable management of aquifers. A sustainable approach to managing groundwater resources usually involves balancing long-term abstraction with the long-term recharge taking into account the needs for environmental flows and implementing drought-preparedness measures (Robins et al. 2006; Foster and MacDonald, 2014). At a high level, a sustainable balance of groundwater abstraction versus aquifer recharge may be considered “Net Zero” (NZ) or “Net Positive” (NP) in cases where recharge is equal to or in excess of abstraction, respectively. However, NZ/NP water management programs that address these concerns have varied definitions of compliance, which include considerations for the application at hand (ILFI, 2020; USGBC, 2020). Locations with high risk of low or poor water supply may be particularly interested in pursuing NZ/NP water. The AQUEDUCT Water Risk Atlas (World Resources Institute, 2019) indicates long-term availability, providing risk levels for quantity and quality of water at specific locations across the globe, for existing and predicted future conditions. This paper follows the U.S. Department of Energy (DOE) Federal Energy Management Program (FEMP) NZ water definition adopted by the U.S. Army for use at their installations, including Army Reserve Centers (ARCs). This definition also relates to the U.S. Army’s current focus on water resilience, which includes short-term and long-term availability of water resources.

net zero water, HUC12, Saipan, American Samoa, Mau↗
DOE OSTI2025

Benchmarking Concentration and Extraction Methods for Wastewater-Based Surveillance of Eight Human Respiratory Viruses: Implications for Rapid Application to Novel Pathogens

To provide early warning and support a rapid response to a novel virus through wastewater surveillance, it would be ideal to understand in advance which concentration and extraction methods are likely to be effective for dPCR-based methods, depending on virus characteristics. In this study, we spiked raw wastewater samples with eight human respiratory viruses and processed them with four methods that concentrate and/or extract nucleic acids from both liquid and solid fractions (Promega, Nanotrap, and InnovaPrep) or only the solid fraction of wastewater (Solids). Our findings provide encouraging evidence that all four methods combined with dPCR could detect an emerging virus in wastewater, although they differed in sensitivity. The pattern of recovery efficiency for adenoviruses, coronaviruses, and influenza A viruses was consistent across methods, with Promega producing higher median recovery efficiencies, while distinct patterns were observed for coxsackieviruses. We also normalized the concentration data with two endogenous fecal indicators, PMMoV and Carjivirus (formerly crAssphage). We found that normalization could reduce method-associated differences if the indicator exhibited a recovery pattern similar to that of the target virus. These findings can guide the selection of concentration and extraction methods for wastewater monitoring based on the properties of target viruses, thus enhancing pandemic preparedness.

Biological and medical sciences↗
NASA NTRS2007

Earth Observations to Assess Impact of Hurricane Katrina on John C. Stennis Space Center

The peril from hurricanes to Space Operations Centers is real and is forecast to continue; Katrina, Rita, and Wilma of 2005 and Charley, Frances, Ivan, and Jeanne of 2004 are sufficient motivation for NASA to develop a multi-Center plan for preparedness and response. As was demonstrated at SSC (Stennis Space Center) in response to Hurricane Katrina, NASA Centers are efficiently activated as local command centers, playing host to Federal and State agencies and first responders to coordinate and provide evacuation, relocation, response, and recovery activities. Remote sensing decision support provides critical insight for managing NASA infrastructure and for assisting Center decision makers. Managers require geospatial information to manage the federal city. Immediately following Katrina, SSC s power and network connections were disabled, hardware was inoperative, technical staff was displaced and/or out of contact, and graphical decision support tools were non-existent or less than fully effective. Despite this circumstance, SSC EOC (Emergency Operations Center) implemented response operations to assess damage and to activate recovery plans. To assist Center Managers, the NASA ASP (Applied Sciences Program) made its archive of high-resolution data over the site available. In the weeks and months after the immediate crisis, NASA supplemented this data with high-resolution, post-Katrina imagery over SSC and much of the affected coastal areas. Much of the high-resolution imagery was made available through the Department of Defense Clear View contract and was distributed through U.S. Geological Survey Center for Earth Resources Observation and Science "Hurricane Katrina Disaster Response" Web site. By integrating multiple image data types with other information sources, ASP applied an all-source solutions approach to develop decision support tools that enabled managers to respond to critical issues, such as expedient access to infrastructure and deployment of resources, provision of temporary shelter, logistical control of critical supplies, and the mobilization and coordination of assets from ground crews to aircraft/airspace management. Furthermore, ASP developed information products that illustrate risks to SSC's infrastructure from surge, inundation, and flood. Current plans include developing wind-risk prototype products for refinement and adoption into EOC plans.

Graham, William D.↗
DOE OSTI2021

Individual and Collective Strategies to Limit the Impacts of Large Power Outages of Long Duration

As modern society becomes ever more dependent on the availability of electric power, the costs that could arise from individual and social vulnerability to large outages of long duration (LLD-outages) increases. During such an outage, even a small amount of power would be very valuable. Here, this article compares individual and collective strategies for providing limited amounts of electric power to residential customers in a hypothetical New England community during a large electric power outage of long duration. We develop estimates of the emergency load required for survival and assess the cost of strategies to address outages that last 5, 10, and 20 days in either winter or summer. We find that the cost of collective solutions could be as much as 10 to 40 times less than individual solutions (less than $2 per month per home). However, collective solutions would require community-wide coordination, and if local distribution system lines are destroyed, only individual back-up systems could provide contingency power until those lines are repaired. Costs might be reduced if more robust distributed generation were employed that could be operated continuously with the ability to sell power back to the grid. Our cost-effectiveness analysis only assesses what could be done, developing estimates of preparedness cost. A decision about what should be done would require additional input from a range of stakeholders as well as some form of analytical deliberative process.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2025

SURVEILLANCE DETECTION FOR TRANSPORTATION OPERATIONS PERSONNEL TO PREVENT HIJACKING, THEFT, SABOTAGE, AND MALICIOUS SECURITY EVENTS DURING TRANSPORTING NUCLEAR MATERIAL

The secure transportation of high-consequence materials, including nuclear and radiological assets, is a critical global priority in the face of escalating terrorism, security threats, and violent protests targeting these operations. Effective surveillance detection—the ability to identify, assess, and respond to potential threats across a continuum of scenarios—is paramount in addressing these challenges. This paper outlines a phased, multi-tiered training program designed to strengthen the surveillance detection capabilities of organizations responsible for nuclear material transport. The proposed training program adopts a progressive approach, gradually increasing in technical complexity to provide participants with comprehensive knowledge and tools for implementing robust security strategies. It targets a wide spectrum of stakeholders, including competent authorities, regulators, inspectors, shippers, carriers, law enforcement, and emergency response personnel, equipping them to plan, evaluate, and safeguard nuclear material transportation effectively. Each phase of the program emphasizes distinct elements of the surveillance detection continuum and transport security, focusing on critical topics such as threat identification, adversary task timelines, protective methodologies, and attack mitigation strategies. The training framework is anchored in technical exchanges and scenario-driven courses that reflect real-world complexities and challenges. By addressing the surveillance detection continuum comprehensively—from early threat assessment to active countermeasures—the program reinforces global efforts to secure nuclear assets. It aligns with international security objectives and fosters a strong security culture within participating organizations, ensuring personnel are prepared to counter potential threats and maintain the safe, secure movement of these materials. Ultimately, this initiative aims to enhance preparedness, security, and response capabilities, supporting the global mission to safeguard high-consequence materials against evolving threats.

Zineddin, Dr. Z. [ORNL] (ORCID:0009000848740725)↗
NASA NTRSDate not supplied

Assessing Flooding Vulnerability to Assist High Water Intervention and Urban Planning Programs in the Charles River Watershed with NASA DEVELOP

The Charles River watershed intersects 35 municipalities within the Boston Metropolitan Area and has a total population of 1.2 million, making it one of the most densely populated watersheds in New England. In recent years, the watershed has observed higher rates of flood inundation, mainly due to increased development, extreme precipitation events, and increased surface runoff. As the frequency of flooding events increases and a changing climate poses an ongoing threat to local communities, governments and organizations in Massachusetts are in need of accurate flood risk assessments. NASA DEVELOP partnered with the Charles River Watershed Association, the Town of Natick’s Office of Sustainability, and the Massachusetts Audubon Society to assess flood vulnerability and susceptibility in the watershed. The team used Landsat 5 Thematic Mapper, Landsat 8 Operational Land Imager, Sentinel-1 C-Band Synthetic Aperture Radar, and Sentinel-2 MultiSpectral Instrument to assess the feasibility of identifying the extent of past flood events using remote sensing. After identifying images that overlapped with reported flood events, the team concluded that it was not feasible to use Earth observation data to detect localized flooding in the time available for this study. Instead, the Federal Emergency Management Agency (FEMA) 100-year floodplain was used as a proxy for areas where flooding may occur. The team used statistical regression analysis and validation and supervised classification to develop a flood susceptibility map, incorporating several flood conditioning factors. The susceptibility maps were calibrated to various thresholds, including two that highlight hypothetical flooding under more liberal and more conservative planning scenarios. These were overlaid with demographic and socioeconomic data to create flood vulnerability maps. The team’s flood susceptibility maps showed an improvement in capturing known flood events over the FEMA 100-year and 500-year floodplain maps. These results will be improved with the addition of stormwater drainage mapping and precipitation data. Results can be used to fill in the gaps to help the stakeholders understand their communities’ vulnerability and susceptibility to flooding and improve their preparedness plans.

Trista Brophy↗
DOE OSTI2026

Energy Technology Innovation Partnership Project Strategic Energy Plan for Washington County, Maine

This Strategic Energy Plan (SEP) for Washington County, Maine was developed through the U.S. Department of Energy's Energy Technology Innovation Partnership Project (ETIPP) to address local challenges related to electricity reliability, affordability, and safety. Grounded in a "relational infrastructure" approach, the plan recognizes that improved energy outcomes depend not only on physical grid investments but also on strengthened coordination and trust between utilities and communities. Using utility-provided reliability data, public datasets, and community input, the plan identifies key risks, including vegetation-related outages, high energy burden, and vulnerability among elderly and medically dependent populations. The SEP establishes three priority areas: hazard mitigation for energy infrastructure, outage safety and emergency readiness, and energy assistance and thermal safety. It outlines community-driven actions designed to complement utility-led system improvements, including targeted outreach, municipal coordination, and expanded access to energy programs. The plan also situates local conditions within broader state policy, market dynamics, and funding opportunities. Intended as a living document, this SEP provides a scalable framework for collaborative action to improve resilience, safety, and affordability in rural energy systems.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2024

Clear Sky Toolkit: Decision Support User Guide

The Clear Sky Decision Support Template is a Microsoft Excel-based resource that enables users to screen and prioritize critical facilities for the addition of solar + storage. The Decision Support Template consolidates and streamlines the most relevant resources from the emergency management discipline, the electric utility sector, and national energy research institutions to assist in further site analysis and decision-making. The Decision Support Template is intended for use by local government and private sector decision-makers who aim to mitigate the effects of power outages on critical infrastructure, understand the potential for deploying photovoltaic (PV) and storage solutions on critical facilities, and align emergency management planning processes and utility needs with community resilience objectives. The Decision Support Template is divided into five modules that provide a structured, step-by-step approach users can follow and apply to unique circumstances. This process guides a more thorough and accurate assessment of a site's potential to accommodate a solar + storage system, provide grid benefits to utilities, and support community resilience and disaster mitigation for the broader region. After identifying potentially viable and preferred sites for solar + storage using the Decision Support Template, users should conduct a more detailed evaluation and consultation with a solar professional.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2025

Dysregulation of lung epithelial cell homeostasis and immunity contributes to Middle East respiratory syndrome coronavirus disease severity

Coronaviruses (CoV) emerge suddenly from animal reservoirs to cause novel diseases in new hosts. Discovered in 2012, the Middle East respiratory syndrome coronavirus (MERS-CoV) is endemic in camels in the Middle East and is continually causing local outbreaks and epidemics. While all three newly emerging human CoVs from the past 20 years (SARS-CoV, SARS-CoV-2, and MERS-CoV) cause respiratory disease, each CoV has unique host interactions that drive differential pathogeneses. To better understand the virus and host interactions driving lethal MERS-CoV infection, we performed a longitudinal multi-omics analysis of sublethal and lethal MERS-CoV infection in mice. Significant differences were observed in body weight loss, virus titers, and acute lung injury among lethal and sub-lethal virus doses. Virus-induced apoptosis of type I and II alveolar epithelial cells suggests that loss or dysregulation of these key cell populations was a major driver of severe disease. Omics analysis suggested differential pathogenesis was multi-factorial with clear differences among innate and adaptive immune pathways as well as those that regulate lung epithelial homeostasis. Infection of mice lacking functional T and B cells showed that adaptive immunity was important in controlling viral replication but also increased pathogenesis. In summary, we provide a high-resolution host response atlas for MERS-CoV infection and disease severity. Multi-omics studies of viral pathogenesis offer a unique opportunity to not only better understand the molecular mechanisms of disease but also to identify genes and pathways that can be exploited for therapeutic intervention all of which is important for our future pandemic preparedness.

MERS-CoV↗
DOE OSTI2023

An Inventory of AI-ready Benchmark Data for US Fires, Heatwaves, and Droughts

Extreme weather events, including fires, heatwaves, and droughts, have significant impacts on earth, environmental, and energy systems. Mechanistic and predictive understanding, as well as probabilistic risk assessment of these extreme weather events, are crucial for detecting, planning for, and responding to these extremes. Records of extreme weather events provide an important data source for understanding present and future extremes, but the existing data needs preprocessing before it can be used for analysis. Moreover, there are many nonstandard metrics defining the levels of severity or impacts of extremes. In this study, we compile a comprehensive benchmark data inventory of extreme weather events, including fires, heatwaves, and droughts. The dataset covers the period from 2001 to 2020 with a daily temporal resolution and a spatial resolution of 0.5°×0.5° (~55km×55km) over the continental United States (CONUS), and a spatial resolution of 1km × 1km over the Pacific Northwest (PNW) region, together with the co-located and relevant meteorological variables. By exploring and summarizing the spatial and temporal patterns of these extremes in various forms of marginal, conditional, and joint probability distributions, we gain a better understanding of the characteristics of climate extremes. The resulting AI/ML-ready data products can be readily applied to ML-based research, fostering and encouraging AI/ML research in the field of extreme weather. This study can contribute significantly to the advancement of extreme weather research, aiding researchers, policymakers, and practitioners in developing improved preparedness and response strategies to protect communities and ecosystems from the adverse impacts of extreme weather events. Usage Notes We presented a long term (2001-2020) and comprehensive data inventory of historical extreme events with daily temporal resolution covering the separate spatial extents of CONUS (0.5°×0.5°) and PNW(1km×1km) for various applications and studies. The dataset with 0.5°×0.5° resolution for CONUS can be used to help build more accurate climate models for the entire CONUS, which can help in understanding long-term climate trends, including changes in the frequency and intensity of extreme events, predicting future extreme events as well as understanding the implications of extreme events on society and the environment. The data can also be applied for risk accessment of the extremes. For example, ML/AI models can be developed to predict wildfire risk or forecast HWs by analyzing historical weather data, and past fires or heateave , allowing for early warnings and risk mitigation strategies. Using this dataset, AI-driven risk assessment models can also be built to identify vulnerable energy and utilities infrastructure, imrpove grid resilience and suggest adaptations to withstand extreme weather events. The high-resolution 1km×1km dataset ove PNW are advantageous for real-time, localized and detailed applications. It can enhance the accuracy of early warning systems for extreme weather events, helping authorities and communities prepare for and respond to disasters more effectively. For example, ML models can be developed to provide localized HW predictions for specific neighborhoods or cities, enabling residents and local emergency services to take targeted actions; the assessment of drought severity in specific communities or watersheds within the PNW can help local authorities manage water resources more effectively.

Lin, Xinming↗
DOE OSTI2025

Phylodynamics of SARS-CoV-2 Lineages B.1.1.7, B.1.1.529 and B.1.617.2 in Nigeria Suggests Divergent Evolutionary Trajectories

Background: The early months of the COVID-19 pandemic were characterized by high transmission rates and mortality, compounded by the emergence of multiple SARS-CoV-2 lineages, including Variants of Concern (VOCs). This study investigates the phylodynamic and spatio-temporal trends of VOCs during the peak of the pandemic in Nigeria. Methods: Whole-genome sequencing (WGS) data from three major VOCs circulating in Nigeria, B.1.1.7 (Alpha), B.1.617.2 (Delta), and B.1.1.529 (Omicron), were analyzed using tools such as Nextclade, R Studio v 4.2.3, and BEAST X v 10.5.0. The spatial distribution, evolutionary history, viral ancestral introductions, and geographic dispersal patterns were characterized. Results: Three major lineages following WHO nomenclature were identified: Alpha, Delta, and Omicron. The Delta variant exhibited the widest geographic spread, detected in 14 states, while the Alpha variant was the least distributed, identified in only eight states but present across most epidemiological weeks studied. Evolutionary rates varied slightly, with Alpha exhibiting the slowest rate (2.66 × 10 −4 substitutions/site/year). Viral population analyses showed distinct patterns: Omicron sustained elevated population growth over time, while Delta declined after initial expansion. The earliest Times to Most Recent Common Ancestor (TMRCA) were consistent with the earliest outbreaks of SARS-CoV-2 globally. Geographic transmission analysis indicated a predominant coastal-to-inland spread for all variants, with Omicron showing the most diffuse dispersal, highlighting commercial routes as significant drivers of viral diffusion. Conclusion: The SARS-CoV-2 epidemic in Nigeria was characterized by multiple variant introductions and a dominant coastal-to-inland spread, emphasizing that despite lockdown measures, commercial trade routes played a critical role in viral dissemination. These findings provide insights into pandemic control strategies and future outbreak preparedness.

Nigeria↗
DOE OSTI2021

Nucleic Acid-Based Sensing Techniques for Diagnostics and Surveillance of Influenza

Influenza virus poses a threat to global health by causing seasonal outbreaks as well as three pandemics in the 20th century. In humans, disease is primarily caused by influenza A and B viruses, while influenza C virus causes mild disease mostly in children. Influenza D is an emerging virus found in cattle and pigs. To mitigate the morbidity and mortality associated with influenza, rapid and accurate diagnostic tests need to be deployed. However, the high genetic diversity displayed by influenza viruses presents a challenge to the development of a robust diagnostic test. Nucleic acid-based tests are more accurate than rapid antigen tests for influenza and are therefore better candidates to be used in both diagnostic and surveillance applications. We review various nucleic acid-based techniques that have been applied towards the detection of influenza viruses in order to evaluate their utility as both diagnostic and surveillance tools. We discuss both traditional as well as novel methods to detect influenza viruses by covering techniques that require nucleic acid amplification or direct detection of viral RNA as well as comparing advantages and limitations for each method. There has been substantial progress in the development of nucleic acid-based sensing techniques for the detection of influenza virus. However, there is still an urgent need for a rapid and reliable influenza diagnostic test that can be used at point-of-care in order to enhance responsiveness to both seasonal and pandemic influenza outbreaks.

59 BASIC BIOLOGICAL SCIENCES↗