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At least 109 records · Page 6

Climate Model Diagnostic Analyzer

The comprehensive and innovative evaluation of climate models with newly available global observations is critically needed for the improvement of climate model current-state representation and future-state predictability. A climate model diagnostic evaluation process requires physics-based multi-variable analyses that typically involve large-volume and heterogeneous datasets, making them both computation- and data-intensive. With an exploratory nature of climate data analyses and an explosive growth of datasets and service tools, scientists are struggling to keep track of their datasets, tools, and execution/study history, let alone sharing them with others. In response, we have developed a cloud-enabled, provenance-supported, web-service system called Climate Model Diagnostic Analyzer (CMDA). CMDA enables the physics-based, multivariable model performance evaluations and diagnoses through the comprehensive and synergistic use of multiple observational data, reanalysis data, and model outputs. At the same time, CMDA provides a crowd-sourcing space where scientists can organize their work efficiently and share their work with others. CMDA is empowered by many current state-of-the-art software packages in web service, provenance, and semantic search.

cloud computing↗

A 3D Citizen Science Video Game for NeMO-Net, the NASA Neural Multi-Modal Observation and Training Network for Global Coral Reef Assessment

NeMO-Net, the NASA neural multi-modal observation and training network for global coral reef assessment, is an open-source deep convolutional neural network aimed at accurately assessing the present and past dynamics of coral reef ecosystems through determination of percent living cover and morphology. We present here the active learning component of the project, which consists of an interactive video game prototype for tablet and mobile devices where players are able to intuitively label morphology classifications over mm-scale 3D coral reef imagery. Active learning applications present a novel methodology for engaging the public while efficiently providing large-scale training and test data for increasingly complex and data-intensive machine learning algorithms. NeMO-Net trains players on domain-specific knowledge through interactive tutorials and periodically checks players' input against pre-classified coral imagery to gauge their accuracy and utilize in-game mechanics to provide personalized classification training. Players can rate the classifications of other players, unlock rewards and join a global community as they explore and classify coral reefs and other shallow marine environments.

Citizen Science↗

Enabling Space Biological Knowledge Discovery Through Image and Video Data Sharing

Increased biomedical risks and challenges associated with deep space missions and experiments (cis-Lunar, Mars transit/surface) require new knowledge discovery and development of novel ecosystems. Supporting distant and long-duration missions and experiments requires biological data (from yeast, microbes, fruit flies, C. elegans, plants, crops, rodents, humans) be findable, accessible, interoperable, reusable (FAIR), and maximally open-access. As data-intensive, bioinformatic, meta-analytical, and computer-assisted approaches continue to be a centerpiece of modern research, the NASA Biological and Physical Sciences division is expanding its Open Science capabilities beyond NASA GeneLab. The NASA Ames Life Sciences Data Archive (ALSDA) is a repository which is responsible for collecting and access to space biological imagery and video, alongside tabular and environmental data. In this presentation, we will discuss strategies dealing with archiving, curating, and accessibility of images from very distinct imaging modalities (e.g., micro-computed tomography, magnetic resonance imaging, photographic images of plants, fluorescence microscopy, behavioral videos, etc.). There are two main challenges: 1. Open-source data storage and 2. Metadata related to the imagery-video. Both have been solved by leveraging two existing open-source systems. For data storage, ALSDA is utilizing components through the Open Microscopy Environment (OME), which can read most imaging proprietary formats and display on a web interface complex multidimensional images (Z stack, multi-channel, temporal, spectral). Most technical metadata from imaging modalities are captured seamlessly. For metadata capturing experimental details, ALSDA (like GeneLab) uses the ISA-Tab specification which relies on the ISA data model to order and classify metadata. The ISA data model uses a tree structure with three files to capture the metadata: The top layer is the Investigations file, the second layer is the Study file(s), and the last layer is the Assay file(s). We believe such an approach may be useful for other types of image research data from other investigators in the AGU community.

imaging↗

NASA's Next Generation of Atmospheric Data Science

The Multi-Angle Imager for Aerosols (MAIA) and the Tropospheric Emission: Monitoring of Pollution(TEMPO) are NASA’s next-generation satellite missions for air quality monitoring. These missions will produce high-quality, high-resolution air quality data to support cross-displinary research. The MAIA mission is collaborating with health science researchers and epidemiologists to study the impacts of air quality on health outcomes. TEMPO aims to improve our understanding of tropospheric air pollution chemistry and our ability to make predictions about air quality and climate forcing. TEMPO will offer hourly measurements of tropospheric ozone, aerosols, and clouds focused on North America at high-spatial resolution, while MAIA will produce high-resolution measurements of speciated particulate matter targeting densely populated cities around the globe. Data from these missions will help improve our understanding of the sources, types, and interactions among the aerosols and trace gases that are polluting Earth’s atmosphere, as well as our understanding of the impact of air pollution on pollution on a wide range of important areas including human health, agriculture, weather, and climate change. The challenges of cross-disciplinary research, computationally expensive multi-variate analyses, and high-resolution data at both local and global scales are driving substantial changes across all of NASA’s Distributed Active Archive Centers (DAACs). High resolution data at scales such these requires a new approach to data ingest, archive, and publication. Like other NASA DAACs, the Atmospheric Science Data Center (ASDC), the DAAC that will be responsible for publishing MAIA and TEMPO data products has historically archived and distributed data on premise. DAACs of the future will archive and distribute data in the cloud, enabling them to remake themselves as research-focused data centers that will support on-demand, data-intensive computations for highly accurate retrospective analyses and predictions. Under the new paradigm, data formats and metadata must support on-demand spatial and temporal sub-setting, as well as other data transformation services such as re-gridding and re-sampling. This presentation will discuss work being done to address data formatting and metadata requirements in this dynamic new environment. In addition to the changes in data stewardship practices at the ASDC, the increased focus on supporting scientific research is driving changes in the relationship between DAACs and researchers. While the ASDC will continue to provide first rate data management and stewardship, it is increasingly focused on serving as a partner not only to the science teams that gather and produce the data it publishes, but to the researchers that use that data.

Beth Huffer↗

Shifting institutional culture to develop climate solutions with Open Science

This call to action by Drs. Johnson and Wilkinson is part of a mosaic of voices sharing tangible progress within the climate movement 1,2. This call speaks to us as environmental and Earth scientists motivated by the urgency of climate change and social inequity and who contribute to finding science-driven climate solutions as part of our daily jobs. Unfortunately, we are often unable to efficiently move this critical and urgent work forward because we are impeded by cumbersome daily workflows and restrictive workplace cultures. Our workplaces have not kept pace with the modern realities of data-intensive science: increasing data volumes and storage needs, rapidly evolving technology, new skill requirements, and a growing need for extensive and diverse collaboration. Struggling with old approaches and learning new ones in isolation can fuel burnout and turnover, preventing us from working on science-driven climate solutions effectively.

open science↗

Snowmass Topical Group Summary Report: IF04 -- Trigger and Data Acquisition Systems

A trend for future high energy physics experiments is an increase in the data bandwidth produced from the detectors. Datasets of the Petabyte scale have already become the norm, and the requirements of future experiments -- greater in size, exposure, and complexity -- will further push the limits of data acquisition technologies to data rates of exabytes per seconds. The challenge for these future data-intensive physics facilities lies in the reduction of the flow of data through a combination of sophisticated event selection in the form of high-performance triggers and improved data representation through compression and calculation of high-level quantities. These tasks must be performed with low-latency (i.e. in real-time) and often in extreme environments including high radiation, high magnetic fields, and cryogenic temperatures.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Snowmass Topical Group Summary Report: IF04 -- Trigger and Data Acquisition Systems

A trend for future high energy physics experiments is an increase in the data bandwidth produced from the detectors. Datasets of the Petabyte scale have already become the norm, and the requirements of future experiments -- greater in size, exposure, and complexity -- will further push the limits of data acquisition technologies to data rates of exabytes per seconds. The challenge for these future data-intensive physics facilities lies in the reduction of the flow of data through a combination of sophisticated event selection in the form of high-performance triggers and improved data representation through compression and calculation of high-level quantities. These tasks must be performed with low-latency (i.e. in real-time) and often in extreme environments including high radiation, high magnetic fields, and cryogenic temperatures.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Harnessing ML Privacy by Design Through Crossbar Array Non-idealities

Deep Neural Networks (DNNs), handling computeand data-intensive tasks, often utilize accelerators like Resistiveswitching Random-access Memory (RRAM) crossbar for energyefficient in-memory computation. Despite RRAM’s inherent nonidealities causing deviations in DNN output, this study transforms the weakness into strength. By leveraging RRAM non-idealities, the research enhances privacy protection against Membership Inference Attacks (MIAs), which reveal private information from training data. RRAM non-idealities disrupt MIA features, increasing model robustness and revealing a privacy-accuracy tradeoff. Empirical results with four MIAs and DNNs trained on different datasets demonstrate significant privacy leakage reduction with a minor accuracy drop (e.g., up to 2.8% for ResNet-18 with CIFAR-100).

artificial intelligence↗

photoD with Rubin ’s Data Preview 1: First stellar photometric distances and faint blue star deficits

Aims. We investigate the utility of Rubin’s Data Preview 1 (DP1) for estimating stellar number density profiles across the Milky Way halo. Methods. We used stellar broad-band near-UV to near-IR ugrizy photometry released in Rubin’s DP1 to estimate distance and metallicity for blue main sequence stars brighter than r = 24 in three ~1.1 sq. deg. fields at southern Galactic latitudes. Results. Compared to TRILEGAL simulations of the Galaxy’s stellar content, we found a likely deficit of blue main sequence turn-off stars with 22 < r < 24. We interpreted this discrepancy as a signature of a steeper halo number density profile at galactocentric distances 10–50 kpc than the canonical ~1/r 3 profile assumed in TRILEGAL simulations. Conclusions. This interpretation is consistent with earlier suggestions based on observations of more luminous, but much less numerous, evolved stellar populations, along with a few pencil beam surveys of blue main sequence stars in the northern sky. These results bode well for the future Galactic halo exploration with Rubin’s Legacy Survey of Space and Time (LSST).

Galaxy: fundamental parameters↗

PSTN-019: The LSST Science Pipelines Software: Optical Survey Pipeline Reduction and Analysis Environment

The NSF-DOE Vera C. Rubin Observatory is executing the Legacy Survey of Space and Time (LSST) as its prime mission, producing a series of data releases over the ten-year survey. The LSST Science Pipelines Software will be used to create these data releases and to perform the nightly prompt processing and alert production. This paper provides an overview of the LSST Science Pipelines Software, describing the components and their integration into pipelines that generate science-ready data products.

79 ASTRONOMY AND ASTROPHYSICS↗

The Vera C. Rubin Observatory Data Preview 1

We present Rubin Data Preview 1 (DP1), the first data from the National Science Foundation–Department of Energy Vera C. Rubin Observatory, comprising raw and calibrated single-epoch images, coadds, difference images, detection catalogs, and ancillary data products. DP1 is based on 1792 optical–near-infrared exposures acquired over 48 distinct nights by the Rubin Commissioning Camera (LSSTComCam) on the Simonyi Survey Telescope at the Summit Facility on Cerro Pachón, Chile in late 2024. DP1 covers ∼15 deg 2 distributed across seven roughly equal-sized noncontiguous fields, each independently observed in six broad photometric bands, ugrizy. The median FWHM of the point-spread function across all bands is approximately 1"14, with the sharpest images reaching about 0." 58. The 5σ point-source depths for coadded images in the deepest field, the Extended Chandra Deep Field South, are u = 24.55, g = 26.18, r = 25.96, i = 25.71, z = 25.07, and y = 23.1. Other fields are no more than 2.2 mag shallower in any band, where they have nonzero coverage. DP1 contains approximately 2.3 million distinct astrophysical objects, of which 1.6 million are extended in at least one band in coadds, and 431 solar system objects, of which 93 are new discoveries. DP1 is approximately 3.5 TB in size and is available to Vera C. Rubin Observatory data rights holders via the Rubin Science Platform, a cloud-based environment for the analysis of petascale astronomical data. While small compared to future LSST releases, its high quality and diversity of data support a broad range of early science investigations ahead of full operations in 2026.

Ground-based astronomy↗

RTN-095: The Vera C. Rubin Observatory Data Preview 1

We present Rubin Data Preview 1 (DP1), the first release of data from the NSF-DOE Vera C. Rubin Observatory, consisting of raw and calibrated single-epoch images, coadds, difference images, detection catalogs, and other derived data products. DP1 is based on 1792 science-grade optical/near-infrared exposures acquired over 48 distinct nights by the Rubin Commissioning Camera, LSSTComCam, on the Simonyi Survey Telescope at the Summit Facility on Cerro Pachón, Chile during the first on-sky commissioning campaign in late 2024. DP1 covers a total of ~15 sq. deg. over seven roughly equally-sized non-contiguous fields, each independently observed in six broad photometric bands, ugrizy, spanning a range of stellar densities and latitudes and overlapping with external reference datasets. The median image quality across all bands, measured by the FWHM of the point-spread function, is approximately 1.13 arcseconds, with the sharpest images reaching about 0.65 arcseconds. DP1 contains approximately 2.3 million distinct astrophysical objects, of which 1.6 million are extended in at least one band, and 431 solar system objects, of which 93 are new discoveries. DP1 is approximately 3.5 TB in size and available to Rubin data rights holders via the Rubin Science Platform, a cloud-based environment for the analysis of petascale astronomical data. While small compared to future LSST releases, its high quality and diversity of data support a broad range of early science investigations across all four LSST themes, providing a valuable opportunity to engage with Rubin data ahead of the start of full operations in late 2025.

79 ASTRONOMY AND ASTROPHYSICS↗

SITCOMTN-154: Initial studies of photometric redshifts with LSSTComCam from DP1

This technote holds reports based on the first analyses of the Data Preview 1 (DP1) data by the Science Unit for photometric redshifts. Although photometric redshifts are not an official DP1 data product, the "Photo-z Science Unit" generated photo-z estimates for every galaxy in DP1 using the available multi-band imaging on a best-effort basis. This work included developing training and test datasets by matching DP1 data to high-quality reference redshifts obtained with spectroscopy, Grism data, and multi-band photometry. The Science Unit used the RAIL software package to make photometric redshift estimates using eight different algorithms, developed simple scientific performance metrics, used those metrics to explore how the performance of the algorithms varied with configuration changes, derived more optimized configurations of the algorithms and tested the performance of those configurations. This work, the resulting data products and expected data distribution mechanism are all described there.

79 ASTRONOMY AND ASTROPHYSICS↗

ExaFEL: extreme-scale real-time data processing for X-ray free electron laser science

ExaFEL is an HPC-capable X-ray Free Electron Laser (XFEL) data analysis software suite for both Serial Femtosecond Crystallography (SFX) and Single Particle Imaging (SPI) developed in collaboration with the Linac Coherent Lightsource (LCLS), Lawrence Berkeley National Laboratory (LBNL) and Los Alamos National Laboratory. ExaFEL supports real-time data analysis via a cross-facility workflow spanning LCLS and HPC centers such as NERSC and OLCF. Our work therefore constitutes initial path-finding for the US Department of Energy's (DOE) Integrated Research Infrastructure (IRI) program. We present the ExaFEL team's 7 years of experience in developing real-time XFEL data analysis software for the DOE's exascale supercomputers. We present our experiences and lessons learned with the Perlmutter and Frontier supercomputers. Furthermore we outline essential data center services (and the implications for institutional policy) required for real-time data analysis. Finally we summarize our software and performance engineering approaches and our experiences with NERSC's Perlmutter and OLCF's Frontier systems. This work is intended to be a practical blueprint for similar efforts in integrating exascale compute resources into other cross-facility workflows.

59 BASIC BIOLOGICAL SCIENCES↗

DMTN-277: The Monster: A reference catalog with synthetic ugrizy-band fluxes for the Vera C. Rubin observatory

In order to facilitate bootstrap photometric calibrations of early Rubin Observatory data we have created an all sky reference catalog called The Monster. This reference catalog uses a rank-ordered set of other reference catalogs to generate synthetic ugrizy-band fluxes that can be used calibrate images processed with the LSST science pipelines. This document describes the methodology used to create The Monster, documents the input external reference catalogs, and performs basic data validation of the first version of The Monster.

79 ASTRONOMY AND ASTROPHYSICS↗

RTN-045: Guidelines for User Tutorials

This document defines the guidelines, principles, and formats for user-facing tutorials that demonstrate how to use the Rubin Science Platform (RSP) to analyze data from the Legacy Survey of Space and Time (LSST). All Rubin staff and the broader science community should use these guidelines when contributing to the sets of Jupyter Notebook or documentation-based tutorials maintained by the Rubin Community Science team (CST).

79 ASTRONOMY AND ASTROPHYSICS↗