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At least 109 records · Page 6
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Signatures of Selection for Resistance/Tolerance to Perkinsus olseni in Grooved Carpet Shell Clam ( Ruditapes decussatus ) Using a Population Genomics Approach

ABSTRACT The grooved carpet shell clam ( Ruditapes decussatus ) is a bivalve of high commercial value distributed throughout the European coast. Its production has suffered a decline caused by different factors, especially by the parasite Perkinsus olsenii . Improving production of R . decussatus requires genomic resources to ascertain the genetic factors underlying resistance/tolerance to P. olseni i . In this study, the first reference genome of R . decussatus was assembled through long‐ and short‐read sequencing (1677 contigs; 1.386 Mb) and further scaffolded at chromosome level with Hi‐C (19 superscaffolds; 95.4% of assembly). Repetitive elements were identified (32%) and masked for annotation of 38,276 coding‐ and 13,056 non‐coding genes. This genome was used as a reference to develop a 2bRAD‐Seq 13,438 SNP panel for a genomic screening on six shellfish beds distributed across the Atlantic Ocean and Mediterranean Sea. Beds were selected by perkinsosis prevalence and the infection level was individually evaluated in all the samples. Genetic diversity was significantly higher in the Mediterranean than in the Atlantic region. The main genetic breakage was detected between those regions (F ST = 0.224), being the Mediterranean more heterogeneous than the Atlantic. Several loci under divergent selection (394 outliers; 261 genomic windows) were detected across shellfish beds. Samples were also inspected to detect signals of selection for resistance/tolerance to P. olseni i by using infection‐level and population‐genomics approaches, and 90 common divergent outliers for resistance/tolerance to perkinsosis were identified and used for gene mining. Candidate genes and markers identified provide invaluable information for controlling perkinsosis and for improving production of the grooved carpet shell clam.

Sambade, Inés M. [Department of Zoology, Genetics ↗
DOE OSTI2023

Towards a unified model of neutrino-nucleus interactions

The achievement of the goals of the ongoing and future accelerator-based neutrino experiments – notably the determination of CP violating phase in the lepton sector – will require the development of advanced models of neutrino-nucleus interactions. In this review, we summarise the present status of experimental studies of neutrino-nucleus scattering, and discuss the developments and perspectives of the theoretical approach based on factorisation of the nuclear cross section, which has recently emerged as a promising framework for the description of the variety of processes contributing to the detected signals.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2024

Denoising Seismic Waveforms Using a Wavelet-Transform-Based Machine-Learning Method

Seismic waveform data recorded at stations can be thought of as a superposition of the signal from a source of interest and noise from other sources. Frequency‐based filtering methods for waveform denoising do not result in desired outcomes when the targeted signal and noise occupy similar frequency bands. Recently, denoising techniques based on deep‐learning convolutional neural networks (CNNs), in which a recorded waveform is decomposed into signal and noise components, have led to improved results. These CNN methods, which use short‐time Fourier transform representations of the time series, provide signal and noise masks for the input waveform. These masks are used to create denoised signal and designaled noise waveforms, respectively. However, advancements in the field of image denoising have shown the benefits of incorporating discrete wavelet transforms (DWTs) into CNN architectures to create multilevel wavelet CNN (MWCNN) models. The MWCNN model preserves the details of the input due to the good time–frequency localization of the DWT. In this report we use a data set of over 382,000 constructed seismograms recorded by the University of Utah Seismograph Stations network to compare the performance of CNN and MWCNN‐based denoising models. Evaluation of both models on constructed test data shows that the MWCNN model outperforms the CNN model in the ability to recover the ground‐truth signal component in terms of both waveform similarity and preservation of amplitude information. Model evaluation of real‐world data shows that both the CNN and MWCNN models outperform standard band‐pass filtering (BPF; average improvement in signal‐to‐noise ratio of 9.6 and 19.7 dB, respectively, with respect to BPF). Evaluation of continuous data suggests the MWCNN denoiser can improve both signal detection capabilities and phase arrival time estimates.

58 GEOSCIENCES↗
DOE OSTI2026

Design of a non-invasive laser-based beam profile monitor system for the new Fermilab PIP-II superconducting H- linac

As part of the new Proton Improvement Plan (PIP-II), Fermilab is undertaking the development of a new 800 MeV, 2 mA H- superconducting RF linac to replace its present normal conducting 400 MeV linac. The PIP-II linac consists of a series of superconducting RF cryomodules from 2.1 MeV to 800 MeV. To limit the potential damage to the superconducting RF cavities, PIP-II will utilize non-invasive laser-based monitors (laserwires) to obtain beam profiles via photoionization. This paper will present the design of this PIP-II laserwire system including the picosecond pulsed laser, optical transport line, 13 individual laserwire stations, laser feedback and timing controls. The paper also describes the signal detection system and operation of the profile measurements.

Scarpine, Victor [Fermilab]↗
DOE OSTI2022

Pair production of charged IDM scalars at high energy CLIC

The Compact Linear Collider (CLIC) was proposed as the next energy-frontier infrastructure at CERN, to study e ^+ + e ^- − collisions at three centre-of-mass energy stages: 380,GeV, 1.5,TeV and 3,TeV. The main goal of its high-energy stages is to search for the new physics beyond the Standard Model (SM). The Inert Doublet Model (IDM) is one of the simplest SM extensions and introduces four new scalar particles: H ^\pm ± , A and H; the lightest, H, is stable and hence a natural dark matter (DM) candidate. A set of benchmark points is considered, which are consistent with current theoretical and experimental constraints and promise detectable signals at future colliders. Prospects for observing pair-production of the IDM scalars at CLIC were previously studied using signatures with two leptons in the final state. In the current study, discovery reach for the IDM charged scalar pair-production is considered for the semi-leptonic final state at the two high-energy CLIC stages. Full simulation analysis, based on the current CLIC detector model, is presented for five selected IDM scenarios. Results are then extended to the larger set of benchmarks using the Delphes fast simulation framework. The CLIC detector model for Delphes has been modified to take pile-up contribution from the beam-induced \gamma\gamma γ γ interactions into account, which is crucial for the presented analysis. Results of the study indicate that heavy, charged IDM scalars can be discovered at CLIC for most of the proposed benchmark scenarios, with very high statistical significance.

Klamka, Jan↗
DOE OSTI2022

GraphAlign: Graph-Enabled Machine Learning for Seismic Event Filtering

This report summarizes results from a 2 year effort to improve the current automated seismic event processing system by leveraging machine learning models that can operated over the inherent graph data structure of a seismic sensor network. Specifically, the GraphAlign project seeks to utilize prior information on which stations are more likely to detect signals originating from particular geographic regions to inform event filtering. To date, the GraphAlign team has developed a Graphical Neural Network (GNN) model to filter out false events generated by the Global Associator (GA) algorithm. The algorithm operates directly on waveform data that has been associated to an event by building a variable sized graph of station waveforms nodes with edge relations to an event location node. This builds off of previous work where random forest models were used to do the same task using hand crafted features. The GNN model performance was analyzed using an 8 week IMS/IDC dataset, and it was demonstrated that the GNN outperforms the random forest baseline. We provide additional error analysis of which events the GNN model performs well and poorly against concluded by future directions for improvements.

58 GEOSCIENCES↗
DOE OSTI2022

The Strange Case of Ground-Coupled Airwaves on Seismoacoustic Stations at Local to Near-Regional Scales

Here we investigate the application of ground-coupled airwaves observed by seismoacoustic stations at local to near-regional scales to detect signals of interest and determine back-azimuth information. Ground-coupled airwaves are created from incident pressure waves traveling through the atmosphere that couple to the earth and transmit as a seismic wave with retrograde elliptical motion. Previous studies at sub-local scales (<10 km from a source of interest) found the back-azimuth to the source could be accurately determined from seismoacoustic signals recorded by acoustic and 3-component seismic sensors spatially separated on the order of 10 to 150 m. The potential back-azimuth directions are estimated from the coherent signals between the acoustic and vertical seismic data, via a propagation-induced phase shift of the seismoacoustic signal. A unique solution is then informed by the particle motion of the 3-component seismic station, which was previously found to be less accurate than the seismoacoustic-sensor method. We investigate the applicability of this technique to greater source-receiver distances, from 50-100 km and up to 400 km, which contains pressure waves with tropospheric and stratospheric ray paths, respectively. Specifically, we analyze seismoacoustic sources with ground truth from rocket motor fuel elimination events at the Utah Test and Training Range (UTTR) as well as a 2020 rocket launch in Southern California. From these sources we observe evidence that while coherent signals can be seen from both sources on multiple seismoacoustic station pairs, the determined ground-coupled airwave back-azimuths are more complicated than results at more local scales. Our findings suggest more complex factors including incidence angle, coupling location, subsurface material, and atmospheric propagation effects need to be fully investigated before the ground-coupled airwave back-azimuth determination method can be applied or assessed at these further distances.

58 GEOSCIENCES↗
DOE OSTI2023

Integrators

Many electromagnetic measurements detect signals that are the time derivative of the actual quantity of interest. Examples include so-called “B-dot” and “D-dot” detectors that are used for measuring transient magnetic and electric fields. Integration of these signals to recover the quantity of interest is performed either by hardware integrators in the signal line, or by software coding in the analysis programming. Hardware integration is usually done using a classic resistive-capacitive (RC) circuit, or internally in the detector by induction (L/R) or stray capacitance (RC). These hardware integration methods are only approximate, and must be corrected for distortion. This is usually called “droop correction.” In this note, we will examine this correction in some detail. Transient analysis via Laplace transforms will be used to simplify the mathematics. A rudimentary understanding of this method is assumed.

42 ENGINEERING↗
DOE OSTI2024

Applying Automated Detectors for Regional Infrasound Signals to Global Networks: A Case Study Using the 2022 Hunga Tonga Volcanic Eruption

The January 15, 2022 Tonga Hunga volcanic eruption was the largest event to be recorded across the International Monitoring System infrasound network. Signals from the eruption were identified at all 53 operational stations by International Data Centre analysts. This report contains descriptors for signal detection bulletins produced by infrasound researchers at Sandia National Laboratories and Los Alamos National Laboratory. Manual detection bulletins were produced by laboratory staff. Automated detection bulletins were produced using automated infrasound processing tools developed at both laboratories. Initial results are provided to evaluate the utility of extending tools developed for regional infrasound event analysis to global-scale events.

58 GEOSCIENCES↗
DOE OSTI2026

Data Driven Correlated Noise Simulation for the ICEBERG LArTPC

Accurate electronic-noise simulation is essential for low-energy physics in liquid-argon TPCs. More realistic noise modeling allows us to better tune reconstruction algorithms and more reliably assess and optimize signal-detection thresholds. We present a data-driven noise simulation framework developed for the ICEBERG test stand for DUNE that generates synthetic noise waveforms that reproduce both (i) the measured per-channel magnitude of the Fast Fourier Transform (FFT) and (ii) frequency-dependent channel-to-channel correlations observed in ICEBERG noise data. Using a dedicated noise-only dataset, we build a compact noise model containing per-channel FFT-magnitude targets together with a small set of band-wise cross-wire color matrices. White noise is generated in the frequency domain by drawing circular-symmetric complex Gaussian coefficients with random phases and scaling them to match the measured FFT-magnitude targets, and cross-wire correlations are subsequently imposed using the stored color matrices. The model and algorithm were integrated into the LArSoft + Wire-Cell Toolkit simulation chain and validated by comparing waveform structure, frequency-domain spectra, and band-limited correlation matrices from simulated noise and ICEBERG data. This approach can be extended to other LArTPC operating conditions.

Ghosh, Avik [Iowa State U.]↗
DOE OSTI2022

Differential holography

Differential Holography technology measures the amplitude and/or phase of, e.g., an incident linearly polarized spatially coherent quasi-monochromatic optical field by optically computing the first derivative of the field and linearly mapping it to an irradiance signal detectable by an image sensor. This information recorded on the image sensor is then recovered by a simple algorithm. In some embodiments, an input field is split into two or more beams to independently compute the horizontal and vertical derivatives (using amplitude gradient filters in orthogonal orientations) for detection on one image sensor in separate regions of interest (ROIs) or on multiple image sensors. A third unfiltered beam recorded in a third ROI directly measures amplitude variations in the input field to numerically remove its contribution as noise before recovering the original wavefront using a numerical in algorithm. When combined, the measured amplitude and phase constitute a holographic recording of the incident optical field.

Ravizza, Frank↗
DOE OSTI2023

Light Shining Through a Thin Wall: Evanescent Hidden Photon Detection

A kinetically-mixed hidden photon is sourced as an evanescent mode by electromagnetic fields that oscillate at a frequency smaller than the hidden photon mass. These evanescent modes fall off exponentially with distance, but nevertheless yield detectable signals in a photon regeneration experiment if the electromagnetic barrier is made sufficiently thin. We consider such an experiment using superconducting cavities at GHz frequencies, proposing various cavity and mode arrangements that enable unique sensitivity to hidden photon masses ranging from $10^{-5}$ eV to $ 10^{-1}$ eV.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2023

System and method of phase-locked fiber interferometry

A system and method are provided for optical homodyne detection in an optical fiber interferometer. A detection signal is obtained by interfering an optical data signal with a phase-modulated optical reference signal. The modulator for the optical reference signal is phase-locked to an oscillatory modulation waveform. In embodiments, the modulator includes a piezoelectric element. In more specific embodiments, the modulator is a piezoelectric optical fiber-stretcher.

Katzenmeyer, Aaron Michael↗
DOE OSTI2024

Searching for cosmological stochastic backgrounds by notching out resolvable compact binary foregrounds with next-generation gravitational-wave detectors

Stochastic gravitational-wave backgrounds can be of either cosmological or astrophysical origin. The detection of an astrophysical stochastic gravitational-wave background with ground-based interferometers is expected in the near future. Perhaps even more excitingly, the detection of stochastic backgrounds of cosmological origin by future ground-based interferometers could reveal invaluable information about the early Universe. From this perspective, the astrophysical background is a {\it foreground} that can prevent the extraction of this information from the data. In this paper, we revisit a time-frequency domain notching procedure previously proposed to remove the astrophysical foreground in the context of next-generation ground-based detectors, but we consider the more realistic scenario where we remove individually detectable signals by taking into account the uncertainty in the estimation of their parameters. We find that time-frequency domain masks can still efficiently remove the astrophysical foreground and suppress it to about $5\%$ of its original level. Further removal of the foreground formed by unresolvable events (in particular, unresolvable binary neutron stars), which is about $10$ times larger than the residual foreground from realistic notching, would require detector sensitivity improvements. Therefore, the main limitation in the search for a cosmological background is the unresolvable foreground itself, and not the residual of the notching procedure.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2024

Elimination LArTPC Simulation Uncertainty

Liquid Argon Time Projection Chambers (LArTPC) are crucial for measuring muons and neutrinos by capturing the paths of fast-moving particles through argon gas. However, these detectors face challenges such as electron-ion recombination, diffusion, and attenuation, which introduce uncertainties in simulation models. This study, conducted by Ka ren Mkrtchyan at FERMILAB, aims to reduce these uncertainties by adjusting the amplitude and width of signals detected by the TPC wires. Initial findings indicate that the current modification algorithm requires further refinement to better align simulations with observed data. Ongoing work focuses on correcting computational bugs and enhancing the simulation model for improved accuracy and statistical confidence.

Mkrtchyan, Ka'ren↗
DOE OSTI2024

Adaptive Fault Current-Limiting Control of MMC for Protection of Multiterminal HVDC Systems: Preprint

For the development of multi-terminal high voltage DC (MTDC) transmission, it is critical to design the protection system that can selectively isolate the faulty area from the healthy part of the dc grid using DC circuit breakers (DCCBs) while ensuring continuous operation of converter stations in the healthy part. However, because of the lack of fault current blocking capability in half-bridge (HB) modular multilevel converters (MMCs), when a dc fault occurs, the rising fault currents can quickly reach the blocking threshold within a few milliseconds and disrupt the operation of MMCs in the healthy part. Large DC reactors are often considered in series with DCCBs to reduce the rate of rise of fault currents and prevent blocking of MMCs in the healthy part of the grid. However, large DC reactors can prohibitively increase the cost of the system, particularly when they are considered in an offshore environment, for instance in offshore wind projects. Large dc reactors can also introduce stability issues and create post-fault oscillations. This paper presents an adaptive fault current limiting control method for MMCs to avoid their blocking and enable continuous operation of MTDC systems. It contains two parts: The first part is based on circulating current feedforward control that emulates virtual reactors in each arm of an MMC, which is immediately activated when the fault current starts to increase, to reduce the rate of rise of the fault current; the second part is triggered when the fault current exceeds a preset threshold by temporarily bypassing the SMs, serving as a complement to the fault current limiting effect of the first part. Both parts do not require fault detection signal and they are activated automatically during faults. Simulation case studies of a four-terminal bipolar MMC-HVDC system are presented to demonstrate the effectiveness of the proposed control methods.

active fault current limiting↗
DOE OSTI2024

Quantum enhanced magneto-optical microscopy and spectroscopy

A system comprising a nonlinear medium (NLM), an optical transduction module, a dual homodyne detector and a processor is provided. The NLM receives at least a pump beam and issues the pump, probe and conjugate beams, where the beams are linearly polarized. Optics route the probe, the conjugate or both beams to the sample. The sample imparts polarization rotation to light that interacts therewith. The optical transduction module imparts to the interacted light an optical phase shift that is a 1:1 transduction of the polarization rotation, where at least one of the probe light or the conjugate light carries the imparted optical phase shift. The processor obtains the optical-phase shift based on respective detection signals from the dual homodyne detector and determines, based on the obtained optical-phase shift, at least one of a Faraday polarization rotation, a Kerr polarization rotation or a spin noise spectrum.

Lawrie, Benjamin J.↗
DOE OSTI2026

Formation and Redshift Evolution of Dark Matter Spikes

Dark matter density spikes forming around adiabatically growing black holes can dramatically enhance indirect and direct detection signals. Canonical predictions, however, assume a zero-mass seed in a purely dark matter environment and do not track the long-term dynamical impact of surrounding stars. We present a semi-analytic framework that first generalizes adiabatic spike formation to include finite seed masses, stellar cusps, and non-circular orbits, and then studies the subsequent cosmic evolution by solving coupled Fokker-Planck equations for the dark matter and stellar phase-space distributions, with a heating rate modulated by the cosmic star formation rate. Starting conservatively from canonical Gondolo-Silk spikes and marginalizing over astrophysical uncertainties, we find that stellar gravitational heating drives the inner slope towards $γ_χ\simeq 1.5$ within a few Gyrs (e.g by $z \lesssim 2$ for spikes formed at $z\simeq 10$), yielding overdensities two to four orders of magnitude below canonical expectations but still well above an NFW-like cusp. We provide redshift-dependent benchmarks for the column density and $J$-factor relevant to scattering, decay and annihilation signatures. Any robust interpretation of indirect dark matter signals from galactic nuclei must account for this evolution.

Herrera, Gonzalo [MIT, LNS; MIT, MKI; Harvard U.]↗