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At least 109 records · Page 6

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NASA NTRSDate not supplied

1D-Convolutional Neural Network Architecture for Generalized Time-series Segmentation

Time segmentation of experimental data is a common and often difficult task. Consequently, it is of interest to automate this type of segmentation to reduce manual inputs, which are labor intensive and less consistent. However, simple thresholding algorithms are often insufficiently robust due either to noise or inconsistent data. This paper proposes a simple 1D convolutional neural net (CNN) architecture as a generalized solution for typical time segmentation tasks. The layer architecture, training methods, and methods for simple customization will be described as well as the results of application to three separate data streams: facility condition segmentation, video highlight segmentation, and calorimeter time-series segmentation. In all three test cases the 1D-CNN performs better than tailored integral/derivative/thresholding algorithms across a range of signal-to-noise levels.

CNN↗

NASA NTRSDate not supplied

1D-Convolutional Neural Network Architecture for Generalized Time-series Segmentation

CNN↗

DOE OSTI2025

Optimizing inference of segmentation on high-resolution images in MLExchange

MLExchange is a machine learning (ML) operations platform providing web user-interfaces (UIs) for data visualization and analysis pipelines at synchrotron facilities. Among these UIs is the segmentation app which helps synchrotron users utilize ML algorithms to automatically segment high-resolution scientific images with minimal manual annotation effort. In this work, we share code optimizations that significantly speed up the segmentation inference workflow of large data in short time. By optimizing the sequence of CPU-GPU data transfers and introducing CPU parallelization to key operations, we improve the per-device, per-image frame computational efficiency and observe close to 3×$$\times$$ speedup over the original segmentation inference workflow run time when utilizing a single GPU. Further adaptations enabling multi-GPU inference yield more than 40×$$\times$$ speedup with 100 GPUs compared to the optimized single GPU inference workflow. This acceleration of the segmentation inference workflow will provide MLExchange users with easy access to segmentation results with little wait time.

Lu, Shizhao↗

DOE OSTI2024

Automated Grain Boundary (GB) Segmentation and Microstructural Analysis in 347H Stainless Steel Using Deep Learning and Multimodal Microscopy

Austenitic 347H stainless steel offers superior mechanical properties and corrosion resistance required for extreme operating conditions such as high temperature. The change in microstructure due to composition and process variations is expected to impact material properties. Identifying microstructural features such as grain boundaries thus becomes an important task in the process-microstructure-properties loop. Applying convolutional neural network (CNN)-based deep learning models is a powerful technique to detect features from material micrographs in an automated manner. In contrast to microstructural classification, supervised CNN models for segmentation tasks require pixel-wise annotation labels. However, manual labeling of the images for the segmentation task poses a major bottleneck for generating training data and labels in a reliable and reproducible way within a reasonable timeframe. Microstructural characterization especially needs to be expedited for faster material discovery by changing alloy compositions. Here, in this study, we attempt to overcome such limitations by utilizing multimodal microscopy to generate labels directly instead of manual labeling. We combine scanning electron microscopy images of 347H stainless steel as training data and electron backscatter diffraction micrographs as pixel-wise labels for grain boundary detection as a semantic segmentation task. The viability of our method is evaluated by considering a set of deep CNN architectures. We demonstrate that despite producing instrumentation drift during data collection between two modes of microscopy, this method performs comparably to similar segmentation tasks that used manual labeling. Additionally, we find that naïve pixel-wise segmentation results in small gaps and missing boundaries in the predicted grain boundary map. By incorporating topological information during model training, the connectivity of the grain boundary network and segmentation performance is improved. Finally, our approach is validated by accurate computation on downstream tasks of predicting the underlying grain morphology distributions which are the ultimate quantities of interest for microstructural characterization.

36 MATERIALS SCIENCE↗

DOE OSTI2025

SwinCell: a 3D transformer and flow-based framework for improved cell segmentation

Segmentation of three-dimensional (3D) cellular images is fundamental for studying and understanding cell structure and function. However, 3D cellular segmentation is challenging, particularly for dense cells and tissues. This challenge arises mainly from the complex contextual information within 3D images, anisotropic properties, and the sensitivity to internal cellular structures, which often lead to incorrect segmentation. In this work, we introduce SwinCell, a 3D transformer-based framework that leverages Swin-transformer to predict flow and differentiate individual cell instances. We demonstrate SwinCell’s utility in the segmentation of nuclei, colon tissue cells, and densely cultured cells. SwinCell strikes a balance between maintaining detailed local feature recognition and understanding broader contextual information. Through extensive testing with both public and in-house 3D cell imaging datasets, SwinCell shows utility in segmenting dense cells, making it a valuable tool for 3D segmentation in cellular analysis that could expedite research in cell biology and tissue engineering.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2025

MultiTaskDeltaNet: change detection-based image segmentation for operando ETEM with application to carbon gasification kinetics

Transforming in situ transmission electron microscopy (TEM) imaging into a tool for spatially-resolved operando characterization of solid-state reactions requires automated, high-precision semantic segmentation of dynamically evolving features. However, traditional deep learning methods for semantic segmentation often face limitations due to the scarcity of labeled data, visually ambiguous features of interest, and scenarios involving small objects. To tackle these challenges, we introduce MultiTaskDeltaNet (MTDN), a novel deep learning architecture that creatively reconceptualizes the segmentation task as a change detection problem. By implementing a unique Siamese network with a U-Net backbone and using paired images to capture feature changes, MTDN effectively leverages minimal data to produce high-quality segmentations. Furthermore, MTDN utilizes a multi-task learning strategy to exploit correlations between physical features of interest. In an evaluation using data from in situ environmental TEM (ETEM) videos of filamentous carbon gasification, MTDN demonstrated a significant advantage over conventional segmentation models, particularly in accurately delineating fine structural features. Notably, MTDN achieved a 10.22% performance improvement over conventional segmentation models in predicting small and visually ambiguous physical features. This work bridges key gaps between deep learning and practical TEM image analysis, advancing automated characterization of nanomaterials in complex experimental settings.

08 HYDROGEN↗

DOE OSTI2024

The Number and Pattern of Viral Genomic Reassortments are not Necessarily Identifiable from Segment Trees

Reassortment is an evolutionary process common in viruses with segmented genomes. These viruses can swap whole genomic segments during cellular co-infection, giving rise to novel progeny formed from the mixture of parental segments. Since large-scale genome rearrangements have the potential to generate new phenotypes, reassortment is important to both evolutionary biology and public health research. However, statistical inference of the pattern of reassortment events from phylogenetic data is exceptionally difficult, potentially involving inference of general graphs in which individual segment trees are embedded. In this paper, we argue that, in general, the number and pattern of reassortment events are not identifiable from segment trees alone, even with theoretically ideal data. We call this fact the fundamental problem of reassortment, which we illustrate using the concept of the “first-infection tree,” a potentially counterfactual genealogy that would have been observed in the segment trees had no reassortment occurred. Further, we illustrate four additional problems that can arise logically in the inference of reassortment events and show, using simulated data, that these problems are not rare and can potentially distort our observation of reassortment even in small data sets. Finally, we discuss how existing methods can be augmented or adapted to account for not only the fundamental problem of reassortment, but also the four additional situations that can complicate the inference of reassortment.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Evaluation of U-net-based Image Segmentation Model to Digital Mammography

Detecting suspicious lesions in medical imaging is the important first step in computer-aided detection (CAD) systems. However, detecting abnormalities in breast tissue is difficult due to the lesion's varying size, shape, margin, and contrast with the background tissue. We focused on mass segmentation, a method that provides notable morphological features by outlining contours of masses. Accurate segmentation is crucial for correct diagnosis. Recent advancements in deep learning have improved object detection and segmentation, and these techniques are also being applied to medical imaging studies. We focused on U-net, which is a recently developed mass segmentation algorithm based on a fully convolutional network. The U-net architecture consists of (1) a contracting path to increase the resolution of the output and (2) a symmetric expanding path to better locate the region of interest. The performance of a U-net model was tested with 63 digital mammograms from INbreast, a publicly available database. We trained the model with images resized to 40x40 pixels and conducted 10-fold cross-validation to prevent overfitting. The model's performance with respect to breast density and the lesion's BI-RADS rating was also investigated. Dice coefficients (DC) were used as a performance measure to compare the predicted segmentation of the model with the ground truth. Logistic regression and an analysis of variance were performed to determine the significance of the DCs with regards to breast density and lesion behavior and to calculate the 95% confidence interval. The average DC was 0.80. The difference between DCs for BI-RADS 2 and 4c and for BI-RADS 2 and 5 were significant, suggesting that the model has more difficulty in segmenting benign lesions.

Cho, Priscilla↗

DOE OSTI2024

Hestia SW-IFL Onroad Fossil Fuel Carbon Dioxide (FFCO2) product: Road segment-level annual FFCO2 emissions across Arizona (2017-2022), version 1.1

The SW-IFL onroad fossil fuel carbon dioxide (FFCO2) emissions data product represents CO2 emissions from the combustion of fossil fuels by motor vehicles (e.g., passenger cars, trucks, buses, motorcycles) traveling on designated roadways. The emissions are represented geographically on each road segment within the state of Arizona spanning the 2017 to 2022 time period. This data product was developed as part of the Southwest Urban Corridor Integrated Field Laboratory (SW-IFL) project, which aims to provide new knowledge and tools that address urban environmental issues by integrating high-resolution observations, modeling, and civic engagement. The emissions data are provided in CSV (input data, ONR_FFCO2_AZ_county.csv) and GeoPackage form (output polyline objects - about 786,000 road segments, XXXX_AZ_v1.1.gpkg) designated by road class (interstates, arterials, collectors, local). The metadata file (Metadata_SW-IFL_Onroad_annualFFCO2_v1.1.docx) provides details about attributes and data formats. The GeoPackage emissions data are provided separately for local roads and nonlocal roads (interstates, arterials, collectors). The method file (Methods_SW-IFL_Onroad_annualFFCO2_v1.1.docx) describes the data processing flow and data sources. Update on 2024-04-17: Updates were made to both the input emission data file (.csv) and output segment-level emission file (.gpkg). There was an update in county-level emission input data (ONR_FFCO2_AZ_county.csv) and the entire road segments were reprocessed to reflect this update.Update on 2024-04-29: Update was made to one output segment-level emission file (Nonlocal_AZ_v1.0.gpkg). There was an error in the AADT values and the data were reprocessed to reflect this update.Update on 2024-10-22: Temporal coverage was extended to include 2022. VMT values were recalculated using new AADT data and the entire road segments were reprocessed to reflect these updates.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS1974

Strain gauge ambiguity sensor for segmented mirror active optical system

A system is described to measure alignment between interfacing edges of mirror segments positioned to form a segmented mirror surface. It serves as a gauge having a bending beam with four piezoresistive elements coupled across the interfaces of the edges of adjacent mirror segments. The bending beam has a first position corresponding to alignment of the edges of adjacent mirror segments, and it is bendable from the first position in a direction and to a degree dependent upon the relative misalignment between the edges of adjacent mirror segments to correspondingly vary the resistance of the strain guage. A source of power and an amplifier are connected in circuit with the strain gauge whereby the output of the amplifier varies according to the misalignment of the edges of adjacent mirror segments.

Wyman, C. L.↗

NASA NTRS1983

An evaluation of circumferentially segmented duct liners

An evaluation of circumferentially segmented duct linings are performed by comparing attenuations of optimized segmented and uniform linings for a range of frequencies and source structures. Broadband suppression and the effects of changes to input modal structure are explored in these comparisons. Credence in the theoretical model was obtained by comparing predictions to results of a carefully controlled experiment performed on the Spinning Mode Synthesizer facility at the NASA Langley Research Center. Excellent agreement was obtained in these comparisons. Predicted results show that the optimized segmented liner is more effective than the optimized uniform liner for the higher order spinning mode sources with a hard-wall/soft-wall admittance variation representing an optimum configuration for the segmented liner. Predicted results also indicate that the segmented linear gives better broadband performance and that its suppression characteristics are not particularly sensitive to changes in input modal structure when compared to that of the uniform lining. It is shown that the greatest suppression benefit of segmented linings occur near mode cuton frequencies and that these benefits are obtained despite reductions in the total amount of acoustic treatment of fifty percent or more.

Watson, W. R.↗

NASA NTRS1988

A hardware implementation of a relaxation algorithm to segment images

Relaxation labelling is a mathematical technique frequently applied in image processing algorithms. In particular, it is extensively used for the purpose of segmenting images. The paper presents a hardware implementation of a segmentation algorithm, for images consisting of two regions, based on relaxation labelling. The algorithm determines, for each pixel, the probability that it should be labelled as belonging to a particular region, for all regions in the image. The label probabilities (labellings) of every pixel are iteratively updated, based on those of the pixel's neighbors, until they converge. The pixel is then assigned to the region correspondent to the maximum label probability. The system consists of a control unit and of a pipeline of segmentation stages. Each segmentation stage emulates in the hardware an iteration of the relaxation algorithm. The design of the segmentation stage is based on commercially available digital signal processing integrated circuits. Multiple iterations are accomplished by stringing stages together or by looping the output of a stage, or string of stages, to its input. The system interfaces with a generic host computer. Given the modularity of the architecture, performance can be enhanced by merely adding segmentation stages.

Loda, Antonio G.↗

NASA NTRS1988

Segment alignment control system

The segmented primary mirror for the LDR will require a special segment alignment control system to precisely control the orientation of each of the segments so that the resulting composite reflector behaves like a monolith. The W.M. Keck Ten Meter Telescope will utilize a primary mirror made up of 36 actively controlled segments. Thus the primary mirror and its segment alignment control system are directly analogous to the LDR. The problems of controlling the segments in the face of disturbances and control/structures interaction, as analyzed for the TMT, are virtually identical to those for the LDR. The two systems are briefly compared.

Aubrun, JEAN-N.↗

NASA NTRS1991

A tool for interactive exploration of a hierarchical segmentation

Hierarchical segmentation is discussed as a form of region growing in which the sequence of merges is controlled by a 'best merge first' principle, and a record of the region merging sequence is often retained for later analysis. In the author's massively parallel implementation of hierarchical segmentation, which he calls iterative parallel region growing (IPRG), a set of directional edge maps are used to store the region merging sequence information. An iteractive tool is described that allows an analyst to fully explore a hierarchical segmentation, potentially producing an image segmentation that is a combination of segmentations produced at several different iterations of the IPRG algorithm. A potential method for automatically producing such segmentations is also discussed.

Tilton, James C.↗

NASA NTRS1993

Scene segmentation of natural images using texture measures and back-propagation

Knowledge of the three-dimensional world is essential for many guidance and navigation applications. A sequence of images from an electro-optical sensor can be processed using optical flow algorithms to provide a sparse set of ranges as a function of azimuth and elevation. A natural way to enhance the range map is by interpolation. However, this should be undertaken with care since interpolation assumes continuity of range. The range is continuous in certain parts of the image and can jump at object boundaries. In such situations, the ability to detect homogeneous object regions by scene segmentation can be used to determine regions in the range map that can be enhanced by interpolation. The use of scalar features derived from the spatial gray-level dependence matrix for texture segmentation is explored. Thresholding of histograms of scalar texture features is done for several images to select scalar features which result in a meaningful segmentation of the images. Next, the selected scalar features are used with a neural net to automate the segmentation procedure. Back-propagation is used to train the feed forward neural network. The generalization of the network approach to subsequent images in the sequence is examined. It is shown that the use of multiple scalar features as input to the neural network result in a superior segmentation when compared with a single scalar feature. It is also shown that the scalar features, which are not useful individually, result in a good segmentation when used together. The methodology is applied to both indoor and outdoor images.

Sridhar, Banavar↗

NASA NTRS1992

Phasing of a space based segmented submillimeter wavelength telescope using focal plane measurements

As part of a technology development program for realizing a space based submillimeter telescope, two different approaches to the absolute phasing of a segmented primary mirror using focal plane measurements have been implemented for feasibility. The method of optimization by simulated annealing evaluates the image quality of a point spread function after all the telescope segments have been randomly moved. It accepts each iteration which improves the image quality, as well as a random number of iterations which do not, thus keeping the Strehl in the initialization procedure from falling into local maxima. Methods for determining the annealing schedule, and the step size for random segment movements are presented and discussed. Using phase diversity and a model for the telescope imaging system, a nonlinear least squares algorithm has also been implemented which parameterizes each of the segment actuator movements. Using multiple out of focus images, the segment actuator positions are estimated using an iterative procedure. Nonlinear least squares, although computationally intensive, offers a large savings in the actuator movements over simulated annealing and pairwise phasing methods for large numbers of segments. These algorithms have been integrated into a general simulation program which models the behavior of the telescope under anticipated space conditions.

Levine, B. M.↗

NASA NTRS1994

A new piston control strategy for segmented mirrors

One approach to the adaptive control of large segmented mirrors involves sending tilt commands to each segment and allowing each segment to minimize the distance between its edges and those of (all or some of) its neighbors. This approach has been adopted in the Phased Array Mirror, Extendible Large Aperture (PAMELA) testbed now located at NASA's Marshall Space Flight Center, Huntsville, AL. This approach minimizes (1) the communication between the sensors and the segment actuators and (2) computations required by the central controlling computer. This report discusses issues that large segmented mirrors built around the PAMELA concept (such as SELENE) will face when they migrate to integrated, and presumably to digital, on-segment computational ability and high bandwidth response.

Olivier, Philip D.↗

NASA NTRS2000

A New High Efficiency Segmented Thermoelectric Unicouple

To achieve high thermal-to-electric energy conversion efficiency, it is desirable to operate thermoelectric generator devices over large temperature gradients and also to maximize the thermoelectric performance of the materials used to build the devices. However, no single thermoelectric material is suitable for use over a very wide range of temperatures (approx. 300 - 1000 K). It is therefore necessary to use different materials in each temperature range where they possess optimum performance. This can be achieved in two ways: 1) multistage thermoelectric generators where each stage operates over a fixed temperature difference and is electrically insulated but thermally in contact with the other stages and 2) segmented generators where the p- and n-legs are formed of different segments joined in series. The concept of integrating new thermoelectric materials developed at the Jet Propulsion Laboratory (JPL) into a segmented thermoelectric generator has been presented in detail in earlier publications . This new generator is expected to operate over a 300-973 K temperature difference and will use novel segmented legs based on a combination of state-of-the-art thermoelectric materials and novel p-type Zn4Sb3, p-type CeFe4Sb12-based alloys and n-type CoSb3-based alloys. An increase in the conversion efficiency of about 60% is expected compared to conventional Bi2Te3- and PbTe-based generators. We present in this paper the latest experimental results from the bonding studies between the different segments of the p-legs, n-legs, and p-leg to n-leg interconnect. Evaluation of the bond quality was done by measuring the contact resistance across the joints as well as by detailed microstructure investigations to reveal any potential interdiffusion. Among the materials investigated as inter-layers between the different segments of the legs, Pd-Ag joining alloys have been found to provide mechanically stable and low electrical resistance bonds.

Caillat, T.↗