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Space Flown Rodent Liver RNA Sequencing Data for Machine Learning in Space Biology Research

High-throughput nucleic acid sequencing (DNA-seq, RNA-seq) has become widespread in biomedical research due to the growing availability and affordability of these assays. Data analysis has been accelerated in recent years by the adoption of artificial intelligence (AI) and machine learning (ML) techniques by biomedical researchers. In space biology research, RNAseq datasets from space-flown experimental samples are critical for characterizing the gene expression aberrations associated with exposure to spaceflight stressors. However, space biological experiments tend to be very low sample size, so identifying proper AI/ML algorithms for sequencing data analysis is an ongoing challenge since these algorithms typically require large sample size. The NASA Science Mission Directorate (SMD) has started the “Benchmark Initiative for AI/ML”, focused on creating datasets meant for three main applications: 1) scientific benchmarking, which finds the best algorithm for a specific problem; 2) application benchmarking, which measures algorithm performance against a set of parameters; and 3) system benchmarking, which evaluates performance of hardware and software architecture. These scientific benchmarks consist of an AI-ready dataset and a reference implementation on a specific scientific question. In this work, we focused on generating standardized datasets to allow the scientific community to benchmark AI/ML algorithms in the domain of space biology. We present here a standardized, AI-ready, publicly available benchmark dataset for space biology RNA-seq data as a collaboration between the NASA AI4LS (Artificial Intelligence for Life Sciences) working group. and NASA’s SMD. This dataset consists of space-flown and ground control mouse liver found in the NASA GeneLab omics database. However, to amplify the small sample number (n=112 samples) for ML purposes, we employ Gaussian noise and a generative adversarial network to extend this dataset to 6,000 synthetic samples, matching the original gene expression characteristics.

James Casaletto

Enabling Planetary In-Situ and Sample Return Missions: NASA Developed 3-D Woven Thermal Protection / Heatshield Technology for Extreme Entry Environment

Heatshield for Extreme Entry Environment Technology (HEEET) and 3-D Mid-Density Carbon-Phenolic (3MDCP) are two variants of 3-D Woven. TPS funded by STMD and SMD. HEEET was matured to TRL 6 in 2019, and SMD offered it as incentivized technology. Mars Sample Return Earth Entry System has baselined a seamless 3MDCP heatshield, and it will reach TRL 6 by 2025. HEEET and 3MDCP have been tested to withstand entry peak heat-flux ~ 4500 W/sq.cm, pressure ~ 6.5 atm, and shear ~ 4000 Pa. Bally Ribbon Mills and T.E.A.M. Inc developed looms and demonstrated their capability to weave HEEET and 3MDCP respectively. F.M.I. has demonstrated capability to form and resin infuse the preforms, and machine the TPS for final assembly. Expertise to integrate the parts reside at NASA, and NASA can transfer the knowhow to interested parties via technology transfer.

Ethiraj Venkatapathy

Transitioning a Flexible and Scalable Satellite Ground Station Observation Network (GSON) Framework to an Operational Environment

Obtaining accurate and timely satellite observations is of paramount importance in fields like disaster management, weather diagnoses/forecasting, and Earth Sciences remote sensing. Stored mission data (SMD), from low Earth orbiting (LEO) satellite sensors, provides important observations for these fields and applications, however data access to SMD can be delayed from one and half hours to three hours from the time the observations were made. This data latency poses a significant impact on data product optimal use. We developed a Ground Station Observation Network (GSON) that utilizes commercial ground station as a service (GSaaS) providers to acquire low latency direct broadcast (DB) data from AQUA, SNPP, and JPSS-1 satellites using antennas located in strategic locations around the world. We will discuss techniques to improve the deployment efficiency and code reliability and quality of the GSON framework. Topics include right-sizing and containerization of the code to facilitate integration and adaptation with continuous delivery (CD) pipeline, locating non-code assets in referenceable repositories separated from code, adaptation of pipelines as code and simplification of CD, intersecting with code quality tests and checks as part of the pipeline execution and deployment, and establishing distributed repositories, registries, and system identities in a way that mitigates compromise to the CD pipeline. These techniques enable deployment of processing systems that are both highly specific but also dynamically modifiable. This new class of system allows for a flexible and scalable deployment while avoiding the “black box” issues that can plague large system deployments.

cluster

PLANETARY DEFENSE: FINDINGS AND RECOMMENDATIONS FROM THE NATIONAL ACADEMIES PLANETARY SCIENCE AND ASTROBIOLOGY DECADAL SURVEY 2023 - 2032

The National Academies of Sciences, Engineering, and Medicine was chartered by the NASA Science Mission Directorate (SMD), with support from the National Science Foundation, to conduct a new decadal survey to develop a comprehensive science and mission strategy for planetary science (1). The survey was tasked to determine the current state of knowledge and to identify the most important scientific questions to be addressed in astrobiology and planetary science during the upcoming decade of 2023 - 2032. For the first time, the decadal survey also included and addressed the topic of planetary defense, now recognized as a key element of NASA’s planetary science activities under the direction of NASA’s SMD Planetary Defense Coordination Office. The topic of planetary defense was included in the decadal survey as a dedicated chapter, divided into five sections based on the framework from the U.S. National NEO Preparedness Strategy and Action Plan (2). These sections discussed: NEO Detection, Tracking, and Characterization NEO Modelling, Prediction, and Integration NEO Deflection and Disruption Missions International Cooperation on NEO Preparation NEO Impact Emergency Procedures and Action Protocols Content of these sections included identifying the activities, ground- and space-based assets, facilities, resources, technologies, and missions that should be considered to enable NEO preparedness over the next decade. Supporting inputs to this chapter involved contributions from submitted white papers authored by many members of the NEO science and planetary defense communities. In addition, a planetary defense rapid mission architecture study commissioned by the decadal survey small bodies panel and led by the Jet Propulsion Laboratory examined several different types of in-situ characterization and mitigation demonstration missions. All of this input contributed to the formulation of 42 findings and 11 recommendations that suggest a path forward for increasing our understanding of the NEO population and their associated physical characteristics, modelling the impact probabilities and hazard potential of these objects, and implementing plans to develop and test NEO impact mitigation capabilities. Including planetary defense in the decadal survey has helped sharpen the focus on this international issue and provided key inputs for stakeholders and decision makers to consider when developing future planetary defense-related activities. Such information is vital for developing a long-term integrated planetary defense capability able to protect humanity in the decades to come.

NEO Detection and Characterization

Independent Panel Report for Technical Assessment of NASA and External Quantum Sensing Capabilities

Sensors based on quantum mechanical properties of electromagnetic radiation and matter offer unique capabilities and performance sometimes difficult to achieve using classical approaches. This report assesses the suitability of quantum sensing for current and future NASA needs, with a specific focus on NASA’s Science Mission Directorate (SMD). Measurement and sensing needs across NASA SMD are reviewed as a driver for the possible incorporation of existing quantum sensors into the NASA portfolio and the development of next-generation quantum sensors. A range of quantum sensing modalities is then described and the current state of the art for each sensor is presented. Current research and development activities on quantum sensing within NASA are compared with the range of activities ongoing throughout the broader scientific community, both within the United States and internationally. In conclusion, there is considerable advantage to be gained by NASA from quantum sensors through the growth of internal programs and collaboration with outside entities.

Quantum Sensing

2024 Software for NASA Science Mission Directorate Workshop Report

The 2024 Software for the NASA Science Mission Directorate Workshop was the first workshop of its kind in over 10 years. The numerous attendees and high level of interaction in this hybrid workshop portrayed the untapped interest and energy in the NASA SMD community about software. Over 100 takeaways were collected from the hosted discussions in four key areas - Communication, Communities, Funding and Clarity - as summarized in this report. One takeaway was representative of all four categories: “Software is not hardware; it is organic and needs a different model. You often don't know which components will be Open-Source reusable until later in the development cycle.” For the communication category, this takeaway motivates the reduction of silos by shifting towards a model that better supports community collaboration on common challenges and a more streamlined and improved software release process. For the communities category, the same statement points to forming communities of practice with varying scopes and a new approach to recognition and incentives for open-source software contributions. Concerning funding, this statement motivates a more sustained and flexible funding model that better supports the software foundation needed for NASA’s long-term success, including the collaboration and infrastructure a good foundation requires. The new approach to clarity motivated by this statement calls for significant changes to the software release process and related policies to streamline compliance, align those policies with the open-source science culture NASA is promoting and with each other, and simplify use of the cloud. It is time to recognize software as a foundational component of NASA with an organic nature not properly supported by current approaches. Different models are needed in all four areas to shift the NASA SMD software community and governance structures into a more efficient, open, and collaborative ecosystem - one that enables ground-breaking science and daring exploration into the coming decades

science

Exploring Earth's Interface with Space: The Scientific Case for a Satellite Mission to the Lower Thermosphere-Ionosphere Transition Region

The ESA-NASA Lower Thermosphere-Ionosphere Science (ENLoTIS) Working Group was formed in May 2022 to cooperatively explore future lower thermosphere-ionosphere (LTI) satellite mission concepts, targeting very low altitudes (100-200 km) with in situ sampling of relevant geophysical parameters associated with the neutral atmosphere, the ionosphere’s plasma, electromagnetic fields, and energetic particles, which, together with modeling, would enable significant advancements in the understanding of neutral-ion interactions and other related science and space weather topics in this critical region of Geospace. The LTI region has been identified as one of considerable interest to both NASA and ESA. Most recently, the Daedalus mission study was carried out under the remit of ESA’s Earth Observation Programmes (EOP) Directorate competitive Earth Explorer 10 pre-feasibility (Phase 0) activities. Furthermore, many NASA studies have also focused on the LTI region, including both directed missions with dipping spacecraft, such as the initial TIMED dual-satellites and the GEC constellation, as well as numerous highly-rated Explorer proposals targeting the LTI. Although the Daedalus mission was not selected, the ESA Advisory Committee on Earth Observation (ACEO) ranked it highly on scientific grounds and encouraged further study activities to mature the concept, exploring potential international collaboration. Subsequent bilateral discussions with NASA’s Science Mission Directorate (SMD) noted that such a concept was in alignment with the 2020 SMD science plan – Science 2020-2024: A Vision for Scientific Excellence – along with other complimentary activities within the NASA Heliophysics Division. Building on NASA’s and ESA’s long history of very successful collaborations, this mutual interest in LTI science led to the establishment of a new inter-agency and cross-discipline science connection, linking the ESA EOP Climate Action, Sustainability and Science Department and the NASA Heliophysics Division. Initial exploratory discussions led to the formation of the ENLoTIS Working Group, which was directed to explore the science case behind a potential joint LTI mission. Members of the ENLoTIS Working Group are listed below, consisting of 7 scientists from ESA Member and Cooperating States and 7 scientists from the United States. The working group held 3 “in person” meetings over the course of 18 months, interspersed with regular virtual meetings on a more frequent basis. This report constitutes their chief findings and recommendations.

thermosphere

Governing Data Findability, Accessibility, Interoperability and Reusability (FAIR) Compliance

The most recent data strategy documents at both the federal and NASA levels stipulate that systems should strive for the data they manage to be Findable, Accessible, Interoperable, and Reusable (FAIR). The NASA Life Sciences Portal (NLSP) has already begun leading efforts in this area for HRP, initiating efforts to comply with the FAIR principles. The broad interpretation of the FAIR principles has led to a plethora of tools that use a splay of metrics specifically but variably developed to judge how compliant data and systems are with the principles. A recent review [3] identified and studied 1,180 metrics across 20 publicly available tools for checking FAIR compliance of data and systems. Because of their very recent development, many organizations and data systems managers and developers have not yet had adequate time or resources to understand these FAIR compliance tools and metrics, their variations in design, accuracy or ease of application to their specific data sets and systems. Thus, it would be best for larger organizations like NASA to approach formulating a strategy for governance of FAIR compliance that can be flexibly applied and is adaptable to an evolving awareness knowledge of FAIR compliance methods and tools. In September 2024, the NASA Science Mission Directorate(SMD) organized a workshop on NASA science data repositories, including the topics of implementing FAIR and governing FAIR compliance across SMD. The initial part of these FAIR discussions focused on developing consensus around required science metadata fields. This is challenging given the diverse nature of NASA’s scientific data portfolio, the variety of metadata models and vocabularies used, and variable level of resources available to curate these data. Later discussion focused on three possible approaches to governing FAIR compliance: distributed, in which various programs, projects or systems define their own methods for assessing FAIR compliance, reporting results up appropriate management lines; centralized, in which higher-level organization(s) specify compliance tools or methods for the various data systems; and multi-level, in which a group comprised of individuals with expertise from multiple levels with organizations is formed to provide guidance and/or specifications for governing FAIR compliance. We report on the recommendations this session yielded, and how these might be shaped specifically to help implement and govern the compliance with FAIR of Human Research Program data and systems.

governance

Overview of NASA Finesse (Field Investigations to Enable Solar System Science and Exploration) Science and Exploration Project

NASA's FINESSE (Field Investigations to Enable Solar System Science and Exploration) project was selected as a research team by NASA's Solar System Exploration Research Virtual Institute (SSERVI). SSERVI is a joint Institute supported by NASA's Science Mission Directorate (SMD) and Human Exploration and Operations Mission Directorate (HEOMD). As such, FINESSE is focused on a science and exploration field-based research program to generate strategic knowledge in preparation for human and robotic exploration of other planetary bodies including our Moon, Mars moons Phobos and Deimos, and near-Earth asteroids. FINESSE embodies the philosophy that "science enables exploration and exploration enables science".

SSERVI

Small Business Innovation Research GRC Phase I, Phase II, and Post-Phase II Opportunity Assessment for 2015

This report outlines the 2015 Small Business Innovation Research/Small Business Technology Transfer (SBIR/STTR) Phase I, Phase II, and Post-Phase II opportunity contract award results associated with NASA's Aeronautics Research Mission Directorate (ARMD), Human Exploration and Operations Mission Directorate (HEOMD), Science Mission Directorate (SMD), and Space Technology Mission Directorate (STMD) for NASA Glenn Research Center. The report also highlights the number of Phase I, Phase II, and Post-Phase II contracts awarded by mission directorate. The 2015 Phase I contract awards to companies in Ohio and their corresponding technologies are also discussed.

Aeronautics Research ARMD

Giant Dipole Moments: Remarkable Effects Mono‐, Di‐, and Tri‐ Hydrated 5,6‐Diaminobenzene‐1,2,3,4‐Tetracarbonnitrile

The molecule 5,6-diaminobenzene-1,2,3,4-tetracarbonnitrile (MOI) was first synthesized by Müllen and coworkers in 2016 and boasts an ultrastrong dipole moment of $14.1\pm 0.7$ Debye in THF. Gas phase DFT computations do not fully reflect this ultrastrong dipole moment, demonstrating the role of solvent in increasing this dipole moment. Here, we investigate the effect of solvent molecule position on the dipole moment of this species, computationally examining systems with giant dipole moments. These systems are optimized in the gas phase with the B3LYP functional, employing the aug-cc-pVTZ and def2-TZVP basis sets, as well as the B3LYP-D3BJ/aug-cc-pVTZ functional in Orca. Single point DLPNO-CCSD/aug-cc-pVDZ results were obtained from Orca and Psi4, as well as DLPNO-CCSD(T)/CBS information from Psi4. Additionally, these are compared to the dipole moments of di- and tri-hydrated systems, and the SMD models for THF and water at the B3LYP/aug-cc-pVTZ level of theory. The dissociation energies, HOMO-LUMO energy gaps, and dipole moments are presented. These metrics show the nh1nh1′ THF system boasts the largest dissociation energy and dipole moment of the singly solvated systems, due to its strong hydrogen bonding. The importance of solvent placement is highlighted and may guide the synthesis of macromolecules or organic frameworks incorporating the MOI or MOI-like subunits. Remarkably, a single solvent molecule provides a good model for the difference between the gas phase and solvated species. The predicted gas phase dipole moments computed with B3LYP/aug-cc-pVTZ for the MOI, its monohydrated complex, dihydrated complex, and its trihydrated complex are 9.6, 14.2, 16.0, and 16.8 Debye, respectively.

dipole

Prediction of Redox Potentials for U, Np, Pu, and Am in Aqueous Solution

The redox properties of the actinides in aqueous solution are important for fuel production/reprocessing and understanding the environmental impact of nuclear waste. The redox potentials for U, Np, Pu, and Am in oxidation states from 0 up to VII (as appropriate) in aqueous solutions have been predicted at the density functional theory level with the B3LYP functional, Stuttgart small core pseudopotential basis sets for the actinides, and explicit (30H 2 O molecules)/implicit treatment of the aqueous solvent using the self-consistent reaction field COSMO and SMD approaches for the implicit solvation. The predictions of the structural parameters of clusters incorporating first and second solvation shells are consistent with the available experimental data., Our results are typically within 0.2 V of the available experimental data using two explicit solvation shells with an implicit solvent model. The use of the PW91 functional substantially improved the prediction of the Pu(VI/V) redox couple. The redox couples for An(VI/IV) and An(V/IV) which involve the addition of protons and removal of the actinyl oxygens led to slightly larger differences from experiment. Here, the An(IV/0) and An(III/0) couples were reliably predicted with our approach. Predictions of the unknown An(II/I) redox potentials were negative, consistent with expectations, and predictions for unknown An(VII/VI), An(III/II), and An(II/0) redox couples improve prior estimates.

Actinides

Redox Potentials for Hydrogen Species in Acetonitrile and Tetrahydrofuran

The properties of the fundamental hydrogen species, proton (H+), hydrogen atom (H•), and hydride anion (H-) are critical to a vast range of chemical processes, yet their thermodynamic properties in nonaqueous solvents are not well established. A hybrid supermolecule-continuum approach is used to predict the Gibbs free energies of solvation (?G°solv) and standard redox potentials (E°) for the 2H+/H2 and H•/H- couples in acetonitrile (MeCN) and tetrahydrofuran (THF) following the approach previously used for water. Gas phase geometry optimizations were done using density functional theory (DFT) with the ?B97XD functional, Møller-Plesset second-order perturbation theory (MP2) with augmented correlation-consistent basis sets and composite-correlated molecular orbital theory (G3MP2 and G3MP2B3). Additional single point calculations in gas phase were performed for H- affinity for MeCN and THF at the coupled cluster CCSD(T) level using MP2 geometries. Solvation was included using the self-consistent reaction field SMD model. For H+, the ?G°solv values are predicted to be -252.2 kcal/mol in MeCN and -261.0 kcal/mol in THF. The redox potentials for the 2H+/H2 couple are +0.49 V in MeCN and +0.11 V in THF relative to the aqueous SHE, consistent with the available experimental data. The ?G°solv for H- is predicted to be -80 kcal/mol in MeCN and -68 in THF, and for H•, ?G°solv is predicted to be -1.3 kcal/mol in THF and -2.0 kcal/mol in MeCN. These solvation energies yield respective calculated redox potentials for the H•/H- couple of -0.14 V in MeCN and -0.68 V in THF relative to the aqueous SHE. H2 solvation is slightly exergonic in MeCN (-3.3 kcal/mol) and near thermoneutral in THF (+1.3 kcal/mol). The pKa(H2) is predicted to be 45.4 in MeCN and 47.8 in THF. The proton-coupled electron transfer (PCET) accounting term CG was evaluated giving values on the ferrocene scale within approximately 2 kcal/mol of literature in both solvents. These results provide benchmarks for hydrogen redox chemistry in MeCN and THF and improve consistency across E°, ?G°solv, pKa, and CG. These results provide benchmarks for hydrogen redox chemistry in nonaqueous media challenging previous estimates based on indirect extrapolations and assumptions.

Duda, Damian P.

Accelerating Bilevel Optimization With Hierarchical Many-Threaded Parallel Differential Evolution

Bilevel optimization is encountered in many relevant real-world applications. The main feature of this type of problem is that an upper-level optimization problem is constrained by a nested lower-level optimization problem. Because of this nested structure, bilevel problems (BLPs) are usually computationally expensive to solve. Differential evolution (DE) has demonstrated promising results in solving BLPs of relatively small scales. As the problem scale increases, the decision space becomes intrinsically larger, requiring a growing number of function evaluations for the method to work properly. In this context, heavy parallelization and high-performance computing techniques are indispensable to enable the resolution of more complex and challenging optimization problems. Hence, we propose a hierarchical many-threaded parallel DE approach for BLPs, where both levels are parallelized. The computational experiments demonstrate that the parallel implementation achieved runtime speeds ranging from 44 to 2559 times faster than the sequential version on a well-known scalable SMD benchmark test problem when executed on an NVIDIA A100 GPU. The findings indicate that the algorithm’s convergence is strongly influenced by the number of both upper- and lower-level generations. Moreover, the success of experiments with large-scale problems is closely linked to the choice of small population sizes.

Dufek, Amanda S

The Slate all metal airship

The development of the Slate all metal airship City of Glendale built and completed in 1930 is presented. The airship facilities are discussed. Pertinent data which led to other engineering accomplishments for aviation are shown. The SMD-100 concept is presented along with a brief commentary on the costs and problems involved in such an airship design and the application of the hoisting and elevator facilities to airship development.

Slate, C. C.

Animal life support transporters for Shuttle/Spacelab

Two transporter devices have been developed by the NASA Ames Research Center, primarily for the purpose of stowing small vertebrates and primates in the mid-deck avionics bay of the Shuttle during launch and re-entry. These animals will be used in Life Science Spacelab experiments. Stowage in the mid-deck area will reduce animal exposure to the high noise levels existing in Spacelab during launch; further, the possible exposure of the animals to high temperatures in Spacelab during re-entry and post-landing will be eliminated. The transporters will provide experimenters more timely access to their animals during experiment-critical, pre-launch, and post-landing periods. Rechargeable batteries in the transporters will provide life support system functions for the animals during periods of transfer and during mission phases in which power is temporarily unavailable. The transporters have been successfully designed, fabricated, and tested. Integrated testing of the transporters was performed in the Space Mission Development III (SMD III) Simulation at the NASA Johnson Space Center.

Berry, W. E.

Structure of nonevaporating sprays - Measurements and predictions

Structure measurements were completed within the dilute portion of axisymmetric nonevaporating sprays (SMD of 30 and 87 microns) injected into a still air environment, including: mean and fluctuating gas velocities and Reynolds stress using laser-Doppler anemometry; mean liquid fluxes using isokinetic sampling; drop sizes using slide impaction; and drop sizes and velocities using multiflash photography. The new measurements were used to evaluate three representative models of sprays: (1) a locally homogeneous flow (LHF) model, where slip between the phases was neglected; (2) a deterministic separated flow (DSF) model, where slip was considered but effects of drop interaction with turbulent fluctuations were ignored; and (3) a stochastic separated flow (SSF) model, where effects of both interphase slip and turbulent fluctuations were considered using random sampling for turbulence properties in conjunction with random-walk computations for drop motion. The LHF and DSF models were unsatisfactory for present test conditions-both underestimating flow widths and the rate of spread of drops. In contrast, the SSF model provided reasonably accurate predictions, including effects of enhanced spreading rates of sprays due to drop dispersion by turbulence, with all empirical parameters fixed from earlier work.

Solomon, A. S. P.

The magnetospheric currents - An introduction

It is pointed out that the scientific discipline concerned with magnetospheric currents has grown out from geomagnetism and, in particular, from geomagnetic storm studies. The International Geophysical Year (IGY) introduced a new area for this discipline by making 'man-made satellites' available for the exploration of space around the earth. In this investigation, a brief description is provided of the magnetospheric currents in terms of eight component current systems. Attention is given to the Sq current, the Chapman-Ferraro current, the ring current (the symmetric component), the current systems driven by the solar wind-magnetosphere dynamo (SMD), the cross-tail current system, the average ionospheric current pattern, an example of an instantaneous current pattern, field-aligned currents, and driving mechanisms and models.

Akasofu, S.-I.