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At least 109 records · Page 6

Why We Do What We Do: Data Reuse, Open Access and Privacy in Data Management at the Life Sciences Data Archive

As custodians of the unique and irreplaceable collections of human subject research data generated by the Human Research Program and its predecessors throughout the agency’s history, the Life Sciences Data Archive (LSDA) is charged with protecting participants’ privacy and implementing their consent decisions as it provides retrospective data for use in new studies. This active, stewardship-focused approach to data management and preservation shapes the products that LSDA provides to researchers and the responsibilities of researchers in using the data and publishing their results. This presentation reviews how federal and agency mandates shape LSDA’s data management procedures and expectations for researchers. Topics covered will include LSDA’s movement towards implementation of the FAIR (Findable, Accessible, Interoperable, Reusable) principles and the archive’s evolving data management practices; collaboration between LSDA and the Lifetime Surveillance of Astronaut Health (LSAH) project (the repository of astronaut medical data); LSDA’s response to the challenges of performing its stewardship role and maintaining trust given the public profiles of the subjects whose data it preserves; and the ever-increasing challenges to expectations of subject privacy stemming from the growing power and ubiquity of data analysis and aggregation tools.

data management↗

Subacute diabetic proximal neuropathy

OBJECTIVE: To evaluate the clinical, electrophysiologic, autonomic, and neuropathologic characteristics and the natural history of subacute diabetic proximal neuropathy and its response to immunotherapy. MATERIAL AND METHODS: For the 12-year period from 1983 to 1995, we conducted a retrospective review of medical records of Mayo Clinic patients with diabetes who had subacute onset and progression of proximal weakness. The responses of treated versus untreated patients were compared statistically. RESULTS: During the designated study period, 44 patients with subacute diabetic proximal neuropathy were encountered. Most patients were middle-aged or elderly, and no sex preponderance was noted. The proximal muscle weakness often was associated with reduced or absent lower extremity reflexes. Associated weight loss was a common finding. Frequently, patients had some evidence of demyelination on nerve conduction studies, but it invariably was accompanied by concomitant axonal degeneration. The cerebrospinal fluid protein concentration was usually increased. Diffuse and substantial autonomic failure was generally present. In most cases, a sural nerve biopsy specimen suggested demyelination, although evidence of an inflammatory infiltrate was less common. Of 12 patients who received treatment (with prednisone, intravenous immune globulin, or plasma exchange), 9 had improvement of their conditions, but 17 of 29 untreated patients (59%) with follow-up also eventually had improvement, albeit at a much slower rate. Improvement was usually incomplete. CONCLUSION: We suggest that the entity of subacute diabetic proximal neuropathy is an extensive and severe variant of bilateral lumbosacral radiculoplexopathy, with some features suggestive of an immune-mediated cause. It differs from chronic inflammatory demyelinating polyradiculoneuropathy in that most cases have a more restricted distribution and seem to be monophasic and self-limiting. The efficacy of immunotherapy is unproved, but such intervention may be considered in the severe and progressive cases or ones associated with severe neuropathic pain.

Non-NASA Center↗

MERRA-2 Data and Analytic Services at NASA GES DISC for Climate Extremes Study

NASA's climate reanalysis datasets from the Modern Era Retrospective-analysis for Research and Applications, Version 2 (MERRA-2) contains numerous long-term atmosphere, land, and ocean data products from 1980-present. MERRA-2 datasets, such as precipitation, soil moisture, and temperature, have been used widely to study extreme events. The native archived MERRA-2 data files are day-file (hourly time interval) and month-file, containing up to 125 parameters in one file. Due to the large number of data files and volumes, it is challenging for users, especially the applications research community, to handle the original hourly data files for long time periods to analyze extreme events. In this presentation, we review MERRA-2 data for studies of extreme conditions, and demonstrate analytic services at the NASA Goddard Earth Sciences Data and Information Services Center (GES DISC). One of the current operational services, 'subsetter', allows users to download only specific data of interest, i.e. data selected by parameter, region, and time period. New services are under development that will provide more 'on-the-fly' statistical calculations when downloading data; improve efficiency when accessing long time-series data. We will provide additional "How-to" resources that include step-by-step instructions on data access and usage. We have tested restructuring of day-files in an optimized data cube, which has significantly improved system performance for accessing long time-series. Overall performance is associated with cube size and structure, data compression method, and how the data are accessed. The optimized data cube structure will enable better online analytic services for statistical analysis and extreme events mining. To demonstrate the service, we use an extreme drought associated with the anomalous 2016 monsoon over southern Asia. This prototype time-series service may be augmented in the cloud infrastructure in the future.

data access↗

Snow Process Estimation Over the Extratropical Andes Using a Data Assimilation Framework Integrating MERRA Data and Landsat Imagery

A data assimilation framework was implemented with the objective of obtaining high resolution retrospective snow water equivalent (SWE) estimates over several Andean study basins. The framework integrates Landsat fractional snow covered area (fSCA) images, a land surface and snow depletion model, and the Modern Era Retrospective Analysis for Research and Applications (MERRA) reanalysis as a forcing data set. The outputs are SWE and fSCA fields (1985-2015) at a resolution of 90 m that are consistent with the observed depletion record. Verification using in-situ snow surveys showed significant improvements in the accuracy of the SWE estimates relative to forward model estimates, with increases in correlation (0.49-0.87) and reductions in root mean square error (0.316 m to 0.129 m) and mean error (-0.221 m to 0.009 m). A sensitivity analysis showed that the framework is robust to variations in physiography, fSCA data availability and a priori precipitation biases. Results from the application to the headwater basin of the Aconcagua River showed how the forward model versus the fSCA-conditioned estimate resulted in different quantifications of the relationship between runoff and SWE, and different correlation patterns between pixel-wise SWE and ENSO. The illustrative results confirm the influence that ENSO has on snow accumulation for Andean basins draining into the Pacific, with ENSO explaining approximately 25% of the variability in near-peak (1 September) SWE values. Our results show how the assimilation of fSCA data results in a significant improvement upon MERRA-forced modeled SWE estimates, further increasing the utility of the MERRA data for high-resolution snow modeling applications.

SWE↗

NASA’s Human Data Repositories: An In Depth Look at the New Data Request Process

As NASA transitions its focus to travel back to the moon and on to new destinations, the need to ensure the capture, analysis, and application of research and medical data is of greater urgency than at any other previous time. In this era of limited resources and challenging schedules, the Human Research Program (HRP), based at NASA’s Johnson Space Center (JSC), recognizes the need to extract the greatest possible amount of information from the data already captured. To this end, the HRP Chief Scientist Office (CSO), HRP Program Planning and Control (PP&C) Office, and the Space Medicine Operations Division have been working together to make reuse of both research data and medical monitoring data more accessible to the user community through the Life Science Data Archive (LSDA) and the Lifetime Surveillance of Astronaut Health (LSAH) Repositories. The task of both LSDA and LSAH repositories is to acquire, preserve, and distribute retrospective research (LSDA) and medical (LSAH) data and information both within the NASA community and to the science community at large, for knowledge discovery, retrospective analysis, and planning of future research studies. An additional goal is to encourage collaboration with non-NASA institutions also faced with enhancing human performance in extreme environments. In September 2022, the LSDA website and its contents transitioned to a new NASA Life Sciences Portal (https://nlsp.nasa.gov/explore/lsdahome). This site continues to feature publicly releasable information such as non-attributable datasets, experiment descriptions (from Project Mercury to ISS, as well as from multiple flight analog missions), descriptions of medical monitoring data, and LSAH newsletters (1992 - 2022). The website also provides an updated portal to request additional research and medical data not accessible from the public website. This presentation will provide an in-depth look at the new system as it relates to finding and requesting retrospective data. We will also detail processes from making a request to delivering data for different types of data requests (i.e., attributable, or non-attributable). This includes descriptions of various approval boards, what information and actions the requestor is responsible for, and key milestones in making data available for reuse.

D. M. Thomas↗

Integration and Cooperation in the Next Golden Age of Human Space Flight Data Repositories: Tools for Retrospective Analysis and Future Planning

As NASA transitions from the Space Shuttle era into the next phase of space exploration, the need to ensure the capture, analysis, and application of its research and medical data is of greater urgency than at any other previous time. In this era of limited resources and challenging schedules, the Human Research Program (HRP) based at NASA s Johnson Space Center (JSC) recognizes the need to extract the greatest possible amount of information from the data already captured, as well as focus current and future research funding on addressing the HRP goal to provide human health and performance countermeasures, knowledge, technologies, and tools to enable safe, reliable, and productive human space exploration. To this end, the Science Management Office and the Medical Informatics and Health Care Systems Branch within the HRP and the Space Medicine Division have been working to make both research data and clinical data more accessible to the user community. The Life Sciences Data Archive (LSDA), the research repository housing data and information regarding the physiologic effects of microgravity, and the Lifetime Surveillance of Astronaut Health Repository (LSAH-R), the clinical repository housing astronaut data, have joined forces to achieve this goal. The task of both repositories is to acquire, preserve, and distribute data and information both within the NASA community and to the science community at large. This is accomplished via the LSDA s public website (http://lsda.jsc.nasa.gov), which allows access to experiment descriptions including hardware, datasets, key personnel, mission descriptions and a mechanism for researchers to request additional data, research and clinical, that is not accessible from the public website. This will result in making the work of NASA and its partners available to the wider sciences community, both domestic and international. The desired outcome is the use of these data for knowledge discovery, retrospective analysis, and planning of future research studies.

Thomas, D.↗

NASA Life Sciences Data Repositories: Tools for Retrospective Analysis and Future Planning

As NASA transitions from the Space Shuttle era into the next phase of space exploration, the need to ensure the capture, analysis, and application of its research and medical data is of greater urgency than at any other previous time. In this era of limited resources and challenging schedules, the Human Research Program (HRP) based at NASA s Johnson Space Center (JSC) recognizes the need to extract the greatest possible amount of information from the data already captured, as well as focus current and future research funding on addressing the HRP goal to provide human health and performance countermeasures, knowledge, technologies, and tools to enable safe, reliable, and productive human space exploration. To this end, the Science Management Office and the Medical Informatics and Health Care Systems Branch within the HRP and the Space Medicine Division have been working to make both research data and clinical data more accessible to the user community. The Life Sciences Data Archive (LSDA), the research repository housing data and information regarding the physiologic effects of microgravity, and the Lifetime Surveillance of Astronaut Health (LSAH-R), the clinical repository housing astronaut data, have joined forces to achieve this goal. The task of both repositories is to acquire, preserve, and distribute data and information both within the NASA community and to the science community at large. This is accomplished via the LSDA s public website (http://lsda.jsc.nasa.gov), which allows access to experiment descriptions including hardware, datasets, key personnel, mission descriptions and a mechanism for researchers to request additional data, research and clinical, that is not accessible from the public website. This will result in making the work of NASA and its partners available to the wider sciences community, both domestic and international. The desired outcome is the use of these data for knowledge discovery, retrospective analysis, and planning of future research studies.

Thomas, D.↗

Integrated Analysis of Interferometric SAR, Satellite Altimetry and Hydraulic Modeling to Quantify Louisiana Wetland Dynamics

Wetland loss in Louisiana has been accelerating due primarily to anthropogenic and nature processes, and is being advocated as a problem with national importance. Accurate measurement or modeling of wetland-wide water level changes, its varying extent, its storage and discharge changes resulting in part from sediment loads, erosion and subsidence are fundamental to assessment of hurricane-induced flood hazards and wetland ecology. Here, we use innovative method to integrate interferometric SAR (InSAR) and satellite radar altimetry for measuring absolute or geocentric water level changes and applied the methodology to remote areas of swamp forest in coastal Louisiana. Coherence analysis of InSAR pairs suggested that the HH polarization is preferred for this type of observation, and polarimetric analysis can help to identi:fy double-bonnce backscattering areas in the wetland. Envisat radar altimeter-measured 18- Hz (along-track sampling of 417 m) water level data processed with regional stackfile method have been used to provide vertical references for water bodies separated by levees. The high-resolution (approx.40 m) relative water changes measured from ALOS PALSAR L-band and Radarsat-l C-band InSAR are then integrated with Envisat radar altimetry to obtain absolute water level. The resulting water level time series were validated with in situ gauge observations within the swamp forest. Furthermore, we compare our water elevation changes with 2D flood modeling from LISFLOOD hydrodynamic model. Our study demonstrates that this new technique allows retrospective reconstruction and concurrent monitoring of water conditions and flow dynamics in wetlands, especially those lacking gauge networks.

Lee, Hyongki↗

Atmospheric Water Balance and Variability in the MERRA-2 Reanalysis

Closing and balancing Earths global water cycle remains a challenge for the climate community. Observations are limited in duration, global coverage, and frequency, and not all water cycle terms are adequately observed. Reanalyses aim to fill the gaps through the assimilation of as many atmospheric water vapor observations as possible. Former generations of reanalyses have demonstrated a number of systematic problems that have limited their use in climate studies, especially regarding low-frequency trends. This study characterizes the NASA Modern-Era Retrospective Analysis for Research and Applications version 2 (MERRA-2) water cycle relative to contemporary reanalyses and observations. MERRA-2 includes measures intended to minimize the spurious global variations related to in homogeneity in the observational record. The global balance and cycling of water from ocean to land is presented, with special attention given to the water vapor analysis increment and the effects of the changing observing system. While some systematic regional biases can be identified,MERRA-2 produces temporally consistent time series of total column water and transport of water from ocean to land. However, the interannual variability of ocean evaporation is affected by the changing surface-wind-observing system, and precipitation variability is closely related to the evaporation. The surface energy budget is also strongly influenced by the interannual variability of the ocean evaporation. Furthermore, evaluating the relationship of temperature and water vapor indicates that the variations of water vapor with temperature are weaker in satellite data reanalyses, not just MERRA-2, than determined by observations, atmospheric models, or reanalyses without water vapor assimilation.

MERRA-2↗

Precipitable water vapor over oceans from the Maritime Aerosol Network: Evaluation of global models and satellite products under clear sky conditions

We present results from an evaluation of precipitable water vapor (W) over remote oceanic areas as derived from global reanalysis models and from satellites against observations from the Maritime Aerosol Network (MAN) for cloudless skies during the period of 2004–2017. They cover polar, mid latitude and tropical oceanic regions and represent a first effort to use MAN observations for such evaluation. The global reanalysis model products evaluated in this study are from the Modern-Era Retrospective analysis for Research and Applications Version 2 (MERRA-2), the European Centre for Medium-Range Weather Forecasts (ECMWF) Interim Reanalysis (ERA I), and the Climate Forecast System Reanalysis (CFSR) model. The satellite products evaluated are from the Moderate Resolution Imaging Spectroradiometer (MODIS), the Polarization and Directionality of the Earth's Reflectances (POLDER), the Global Ozone Monitoring Experiment (GOME-2), the Scanning Imaging Absorption Spectrometer for Atmospheric Chartography (SCIAMACHY), and the Atmospheric Infra-red Sounder (AIRS). Satellite retrievals of W are based on the attenuation of solar reflected light by water vapor absorption bands, except those from AIRS that rely on brightness temperature measurements. A very good agreement is observed between the model estimates and MAN, with mean differences of ~5% and standard deviations of ~15%. These results are within the uncertainties associated with the models and the measurements, indicating the skill of the reanalysis models to estimate W over oceans under clear sky conditions. Mean differences of W between the satellite and MAN products are ~11, 6.7, 12, −7, and 3% for MODIS, POLDER, GOME-2, SCIAMACHY and AIRS respectively, while their standard deviations are 31, 29, 28, 20 and 17%. These differences reveal the need to address inconsistencies among different satellite sensors and ground-based measurements to reduce the uncertainties associated with the retrievals.

Daniel Pérez-Ramírez↗

Evaluation of a proposed expert system development methodology: Two case studies

Two expert system development projects were studied to evaluate a proposed Expert Systems Development Methodology (ESDM). The ESDM was developed to provide guidance to managers and technical personnel and serve as a standard in the development of expert systems. It was agreed that the proposed ESDM must be evaluated before it could be adopted; therefore a study was planned for its evaluation. This detailed study is now underway. Before the study began, however, two ongoing projects were selected for a retrospective evaluation. They were the Ranging Equipment Diagnostic Expert System (REDEX) and the Backup Control Mode Analysis and Utility System (BCAUS). Both projects were approximately 1 year into development. Interviews of project personnel were conducted, and the resulting data was used to prepare the retrospective evaluation. Decision models of the two projects were constructed and used to evaluate the completeness and accuracy of key provisions of ESDM. A major conclusion reached from these case studies is that suitability and risk analysis should be required for all AI projects, large and small. Further, the objectives of each stage of development during a project should be selected to reduce the next largest area of risk or uncertainty on the project.

Gilstrap, Lewey↗

Analyzing Changes in the Complexity of Climate in the Last Four Decades Using MERRA-2 Radiation Data

The energy balance of the Earth is controlled by the shortwave and longwave radiation emitted to space. Changes in the thermodynamic state of the system over time afect climate and are noticeable when viewing the system as a whole. In this paper, we study the changes in the complexity of climate in the last four decades using data from the Modern-Era Retrospective analysis for Research and Applications, Version 2 (MERRA-2). First, we study the complexity of the shortwave and longwave radiation felds independently using Approximate Entropy and Sample Entropy, observing that the rate of complexity change is faster for shortwave radiation. Then, we study the causality of those changes using Transfer Entropy to capture the non-linear dynamics of climate, showing that the changes are mainly driven by the variations in shortwave radiation. The observed behavior of climatic complexity could be explained by the changes in cloud amount, and we research that possibility by investigating its evolution from a complexity perspective using data from the International Satellite Cloud Climatology Project (ISCCP).

Delgado-Bonal, Alfonso↗

Contributions of Precipitation and Soil Moisture Observations to the Skill of Soil Moisture Estimates in a Land Data Assimilation System

The contributions of precipitation and soil moisture observations to the skill of soil moisture estimates from a land data assimilation system are assessed. Relative to baseline estimates from the Modern Era Retrospective-analysis for Research and Applications (MERRA), the study investigates soil moisture skill derived from (i) model forcing corrections based on large-scale, gauge- and satellite-based precipitation observations and (ii) assimilation of surface soil moisture retrievals from the Advanced Microwave Scanning Radiometer for the Earth Observing System (AMSR-E). Soil moisture skill is measured against in situ observations in the continental United States at 44 single-profile sites within the Soil Climate Analysis Network (SCAN) for which skillful AMSR-E retrievals are available and at four CalVal watersheds with high-quality distributed sensor networks that measure soil moisture at the scale of land model and satellite estimates. The average skill (in terms of the anomaly time series correlation coefficient R) of AMSR-E retrievals is R=0.39 versus SCAN and R=0.53 versus CalVal measurements. The skill of MERRA surface and root-zone soil moisture is R=0.42 and R=0.46, respectively, versus SCAN measurements, and MERRA surface moisture skill is R=0.56 versus CalVal measurements. Adding information from either precipitation observations or soil moisture retrievals increases surface soil moisture skill levels by IDDeltaR=0.06-0.08, and root zone soil moisture skill levels by DeltaR=0.05-0.07. Adding information from both sources increases surface soil moisture skill levels by DeltaR=0.13, and root zone soil moisture skill by DeltaR=0.11, demonstrating that precipitation corrections and assimilation of satellite soil moisture retrievals contribute similar and largely independent amounts of information.

Reichle, Rolf H.↗

Using GES DISC Data to Study Kilauea Volcano of 2018

Kilauea volcano in Hawaii which erupted in early May 2018 injected massive amount of SO2 and ash into the atmosphere. The lava flow during the eruption destroyed many home and neighborhoods. The SO2 plume during the eruption of Kilauea volcano is analyzed from May to August 2018 using multiple satellite products such as Level 2 TROPspheric Monitoring Instrument (TROPOMI) and Level 3 Ozone Monitoring Instrument (OMI) from the NASA Goddard Earth Sciences Data and Information Services Center (GES DISC). GES DISC hosts multi-disciplinary Earth science data sets that can be used to analyze natural disasters, such as the Kilauea volcano. Additionally, GES DISC's Giovanni tool can be used to visualize these data. We acquired OMI through the subsetting function, which is processed by the GES DISC in-house developed backend software Level3/4 Regrider and Subsetter (L34RS) and TROPOMI using OPeNDAP.Data from the OMI OMSO2e product showed elevated levels of SO2 amounts during the eruption between May to August 2018. Similarly, ground-based stations at Hawaii Volcanoes National Park recorded higher SO2 concentrations during the same time period. This study uses wind direction from Modern-Era Retrospective analysis for Research and Applications, version 2 (MERRA-2) to analyze the transport and dispersion of SO2 plume and map lava flows from the volcano using thermal images from Visible Infrared Imaging Radiometer Suite (VIIRS). Furthermore, satellite observations combined with socioeconomic and public health data are used to analyze its impact in public health.

KC, Binita↗

A Brief Assessment of the Impact of Nearly 40 Years of Assimilated Observations Over the Amazon Basin

Adding a Forecast Sensitivity-based Observation Impact component to Version 2 of the Modern Era Retrospective-analysis for Research and Applications, the present study provides an assessment of the impact of nearly 40 years of observations on short-range (24-hr) forecasts over the Amazon basin. Under self-verification, forecast errors are found to slightly increase from the early data-sparse days to the more recent years, when data dramatically increase. Throughout the reanalysis, satellite radiances dominate in volume, but only before 1999 they dominate the impacts. Beyond 1999, over 50% of forecast error reduction is associated with conventional observations (radiosondes). Atmospheric Motion Vectors are also found to be large contributors to error reduction, but their contribution reduces in dry periods. In opposition to Atmospheric Motion Vectors, satellite radiances tend to contribute more in the dry season. Results provide motivation for additional conventional observations and the use of all-sky treatment of radiances.

F. L. R. Diniz↗

Medication Use by U.S. Crewmembers on the International Space Station

This study examined medication use during long-duration. Medication records from 24 crewmembers on 20 missions (greater than 30 days duration) were examined for trends in usage rates, efficacy, indication, as well as adverse event qualities, frequencies and severities. No controls were possible in this observational, retrospective analysis of available data; comparisons are made to similar studies of individuals on shortduration spaceflights and submarine deployments. The most frequently used medications were for sleep problems, pain, congestion or allergy. Medication use during spaceflight missions was similar to what is seen in adult ambulatory medicine; one notable exception is that usage of sleep aids was about 10 times higher in spaceflight. There were also two apparent treatment failures in cases of skin rash, raising questions about the efficacy or suitability of the treatments used. Many spaceflight-related medication uses were linked to extravehicular-activities and operationally-driven schedule changes. The data suggest that sleep and skin rash merit additional study prior to longer space exploration missions. It also seems likely that alterations in schedule-shifting or extravehicular activity suits would reduce the need for many medication uses, preserving resources as well as improving crew quality of life.

Wotring, V. E.↗

Analysis of Atmosphere-Ocean Surface Flux Feedbacks in Recent Satellite and Model Reanalysis Products

Recent investigations have examined observations in an attempt to determine when and how the ocean forces the atmosphere, and vice versa. These studies focus primarily on relationships between sea surface temperature anomalies and the turbulent and radiative surface heat fluxes. It has been found that both positive and negative feedbacks, which enhance or reduce sea surface temperature anomaly amplitudes, can be generated through changes in the surface boundary layer. Consequent changes in sea surface temperature act to change boundary layer characteristics through changes in static stability or turbulent fluxes. Previous studies over the global oceans have used coarse-resolution observational and model products such as ICOADS and the NCEP Reanalysis. This study focuses on documenting the atmosphere ocean feedbacks that exist in recently produced higher resolution products, namely the SeaFlux v1.0 product and the NASA Modern Era Retrospective-Analysis for Research and Applications (MERRA). It has been noted in recent studies that evidence of oceanic forcing of the atmosphere exists on smaller scales than the usually more dominant atmospheric forcing of the ocean, particularly in higher latitudes. It is expected that use of these higher resolution products will allow for a more comprehensive description of these small-scale ocean-atmosphere feedbacks. The SeaFlux intercomparisons have revealed large scatter between various surface flux climatologies. This study also investigates the uncertainty in surface flux feedbacks based on several of these recent satellite based climatologies

Roberts, J. Brent↗