Methods for completely deciphering the neuronal circuitry of brain structures.
Neuronal circuitry and neuron populations of structures in normal animal brains and brains modified by unambiguous lesion arrays
BRAIN↗
SEARCH · Engineering Papers
Results for “Population Structure”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Collisional Time Scales in the Kuiper Disk and Their Implications
We explore the rate of collisions among bodies in the present-day Kuiper Disk as a function of the total mass and population size structure of the disk. We find that collisional evolution is an important evolutionary process in the disk as a whole, and indeed, that it is likely the dominant evolutionary process beyond approx. 42 AU, where dynamical instability time scales exceed the age of the solar system. Two key findings we report from this modeling work are: that unless the disk's population structure is sharply truncated for radii smaller than approx. 1-2 km, collisions between comets and smaller debris are occurring so frequently in the disk, and with high enough velocities, that the small body (i.e., KM-class object) population in the disk has probably developed into a collisional cascade, thereby implying that the Kuiper Disk comets may not all be primordial, and that the rate of collisions of smaller bodies with larger 100 less R less 400 km objects (like 1992QB(sub 1) and its cohorts) is so low that there appears to be a dilemma in explaining how QB(sub 1)s could have grown by binary accretion in the disk as we know it. Given these findings, it appears that either the present-day paradigm for the formation of Kuiper Disk is failed in some fundamental respect, or that the present-day disk is no longer representative of the ancient structure from which it evolved. This in turn suggests the intriguing possibility that the present-day Kuiper Disk evolved through a more erosional stage reminiscent of the disks around the stars Beta Pictorus, alpha PsA, and alpha Lyr.
Stern, S. Alan↗
Atmospheric Energy Deposition Modeling and Inference for Varied Meteoroid Structures
Asteroids populations are highly diverse, ranging from coherent monoliths to loosely-bound rubble piles with a broad range of material and compositional properties. These different structures and properties could significantly affect how an asteroid breaks up and deposits energy in the atmosphere, and how much ground damage may occur from resulting blast waves. We have previously developed a fragment-cloud model (FCM) for assessing the atmospheric breakup and energy deposition of asteroids striking Earth. The approach represents ranges of breakup characteristics by combining progressive fragmentation with releases of variable fractions of debris and larger discrete fragments. In this work, we have extended the FCM to also represent asteroids with varied initial structures, such as rubble piles or fractured bodies. We have used the extended FCM to model the Chelyabinsk, Benesov, Kosice, and Tagish Lake meteors, and have obtained excellent matches to energy deposition profiles derived from their light curves. These matches provide validation for the FCM approach, help guide further model refinements, and enable inferences about pre-entry structure and breakup behavior. Results highlight differences in the amount of small debris vs. discrete fragments in matching the various flare characteristics of each meteor. The Chelyabinsk flares were best represented using relatively high debris fractions, while Kosice and Benesov cases were more notably driven by their discrete fragmentation characteristics, perhaps indicating more cohesive initial structures. Tagish Lake exhibited a combination of these characteristics, with lower-debris fragmentation at high altitudes followed by sudden disintegration into small debris in the lower flares. Results from all cases also suggest that lower ablation coefficients and debris spread rates may be more appropriate for the way in which debris clouds are represented in FCM, offering an avenue for future model refinement.
Deposition↗
Structural and stellar-population properties versus bulge types in Sloan Digital Sky Survey central galaxies
ABSTRACT This paper studies pseudo-bulges (P-bulges) and classical bulges (C-bulges) in Sloan Digital Sky Survey (SDSS) central galaxies using the new bulge indicator ΔΣ1, which measures relative central stellar-mass surface density within 1 kpc. We compare ΔΣ1 to the established bulge-type indicator Δ〈μe〉 from Gadotti (2009) and show that classifying by ΔΣ1 agrees well with Δ〈μe〉. ΔΣ1 requires no bulge–disc decomposition and can be measured on SDSS images out to z = 0.07. Bulge types using it are mapped on to 20 different structural and stellar-population properties for 12 000 SDSS central galaxies with masses 10.0 < log M*/M⊙ < 10.4. New trends emerge from this large sample. Structural parameters show fairly linear log–log relations versus ΔΣ1 and Δ〈μe〉 with only moderate scatter, while stellar-population parameters show a highly non-linear ‘elbow’ in which specific star formation rate remains roughly flat with increasing central density and then falls rapidly at the elbow, where galaxies begin to quench. P-bulges occupy the low-density end of the horizontal arm of the elbow and are universally star forming, while C-bulges occupy the elbow and the vertical branch and exhibit a wide range of star formation rates at a fixed density. The non-linear relation between central density and star formation rate has been seen before, but this mapping on to bulge class is new. The wide range of star formation rates in C-bulges helps to explain why bulge classifications using different parameters have sometimes disagreed in the past. The elbow-shaped relation between density and stellar indices suggests that central structure and stellar populations evolve at different rates as galaxies begin to quench.
Luo, Yifei↗
IM3 SELECT Urbanization Data
IM3 SELECT Urbanization Data Urban fraction is provided in TIF files projected on the WGS84 datum at coarse (1/8 degree) and downscaled (1km) resolutions across the globe for each of three Shared Socioeconomic Pathway (SSP) scenarios corresponding to SSP2, SSP3, and SSP5; and each of two population scenarios corresponding to the default population scenario and an updated population scenario with more detailed projections for the United States. The population projections are provided as CSV files. Folder structure: default_population population urban_fraction coarse SSP2 SSP3 SSP5 downscaled SSP2 SSP3 SSP5united_states_updated_population population urban_fraction coarse SSP2 SSP3 SSP5 downscaled SSP2 SSP3 SSP5 Urban fraction data was produced using the SELECT model v1.0.0 (Gao, J. & O'Neill, B.C. 2019). Default population data derived from Gao, J. & O'Neill, B.C. 2020. Original model outputs produced using the default population data are available from Gao, J. 2020. Updated United States population data derived from Zoraghein, H. & O'Neill, B.C. 2020. Other SELECT input files available at Gao, J. & O'Neill, B.C. 2022.
McManamay, Ryan↗
Observations of Energetic-particle Population Enhancements along Intermittent Structures near the Sun from the Parker Solar Probe
Explore the source record for details and available documents.
Riddhi Bandyopadhyay↗
Gravitational Microlensing Event Statistics for the Zwicky Transient Facility
Microlensing surveys have discovered thousands of events, with almost all events discovered within the Galactic bulge or toward the Magellanic Clouds. The Zwicky Transient Facility (ZTF), while not designed to be a microlensing campaign, is an optical time-domain survey that observes the entire northern sky, including the Galactic plane, every few nights. The ZTF observes ~10 9 stars in the g and r bands and can significantly contribute to the observed microlensing population. In this paper, we predict that the ZTF will observe ~1100 microlensing events in 3 yr of observing within 10° latitude of the Galactic plane, with ~500 events in the outer Galaxy (ℓ ≥ 10°). This yield increases to ~1400 (~800) events by combining every three ZTF exposures, ~1800 (~900) events if the ZTF observes for a total of 5 yr, and ~2400 (~1300) events for a 5 yr survey with postprocessing image stacking. Using the microlensing modeling software PopSyCLE, we compare the microlensing populations in the Galactic bulge and the outer Galaxy. We also present an analysis of the microlensing event ZTF18abhxjmj to demonstrate how to leverage these population statistics in event modeling. The ZTF will constrain Galactic structure, stellar populations, and primordial black holes through photometric microlensing.
79 ASTRONOMY AND ASTROPHYSICS↗
The Milky Way tomography with APOGEE: intrinsic density distribution and structure of mono-abundance populations
ABSTRACT The spatial distribution of mono-abundance populations (MAPs, selected in [Fe/H] and [Mg/Fe]) reflect the chemical and structural evolution in a galaxy and impose strong constraints on galaxy formation models. In this paper, we use APOGEE data to derive the intrinsic density distribution of MAPs in the Milky Way, after carefully considering the survey selection function. We find that a single exponential profile is not a sufficient description of the Milky Way’s disc. Both the individual MAPs and the integrated disc exhibit a broken radial density distribution; densities are relatively constant with radius in the inner Galaxy and rapidly decrease beyond the break radius. We fit the intrinsic density distribution as a function of radius and vertical height with a 2D density model that considers both a broken radial profile and radial variation of scale height (i.e. flaring). There is a large variety of structural parameters between different MAPs, indicative of strong structure evolution of the Milky Way. One surprising result is that high-α MAPs show the strongest flaring. The young, solar-abundance MAPs present the shortest scale height and least flaring, suggesting recent and ongoing star formation confined to the disc plane. Finally we derive the intrinsic density distribution and corresponding structural parameters of the chemically defined thin and thick discs. The chemical thick and thin discs have local surface mass densities of 5.62 ± 0.08 and 15.69 ± 0.32 M⊙pc−2, respectively, suggesting a massive thick disc with a local surface mass density ratio between thick to thin disc of 36 per cent.
79 ASTRONOMY AND ASTROPHYSICS↗
Crystalline symmetry-protected non-trivial topology in prototype compound BaAl 4
The BaAl 4 prototype crystal structure is the most populous of all structure types, and is the building block for a diverse set of sub-structures including the famous ThCr 2 Si 2 family that hosts high-temperature superconductivity and numerous magnetic and strongly correlated electron systems. The MA 4 family of materials (M = Sr, Ba, Eu; A = Al, Ga, In) themselves present an intriguing set of ground states including charge and spin orders, but have largely been considered as uninteresting metals. We predict the exemplary compound BaAl 4 to harbor a three-dimensional Dirac spectrum with non-trivial topology and possible nodal lines crossing the Brillouin zone, wherein one pair of semi-Dirac points with linear dispersion along the k z direction and quadratic dispersion along the k x / k y direction resides on the rotational axis with C 4 v point group symmetry. An extremely large, unsaturating positive magnetoresistance in BaAl 4 despite an uncompensated band structure is revealed, and quantum oscillations and angle-resolved photoemission spectroscopy measurements confirm the predicted multiband semimetal structure with pockets of Dirac holes and a Van Hove singularity (VHS) remarkably consistent with the theoretical prediction. We thus present BaAl 4 as a topological semimetal, casting its prototype status into a role as a building block for a vast array of topological materials.
36 MATERIALS SCIENCE↗
Mapping Past, Present, and Future Climatic Suitability for Invasive Aedes Aegypti and Aedes Albopictus in the United States: A Process-Based Modeling Approach Using CMIP5 Downscaled Climate Scenarios
The ongoing spread of the mosquitoes, Aedes aegypti and Aedes albopictus, in the continental United States leaves new areas at risk for local transmission of dengue, chikungunya, and Zika viruses. All three viruses have caused major disease outbreaks in the Americas with infected travelers returning regularly to the U.S. The expanding range of these mosquitoes raises questions about whether recent spread has been enabled by climate change or other anthropogenic influences. In this analysis, we used downscaled climate scenarios from the NASA Earth Exchange Global Daily Downscaled Projections (NEX GDDP) dataset to model Ae. aegypti and Ae. albopictus population growth rates across the United States. We used a stage-structured matrix population model to understand past and present climatic suitability for these vectors, and to project future suitability under CMIP5 climate change scenarios. Our results indicate that much of the southern U.S. is suitable for both Ae. aegypti and Ae. albopictus year-round. In addition, a large proportion of the U.S. is seasonally suitable for mosquito population growth, creating the potential for periodic incursions into new areas. Changes in climatic suitability in recent decades for Ae. aegypti and Ae. albopictus have occurred already in many regions of the U.S., and model projections of future climate suggest that climate change will continue to reshape the range of Ae. aegypti and Ae. albopictus in the U.S., and potentially the risk of the viruses they transmit.
process-based modeling↗
Group size mediates effects of intraspecific competition and forest structure on productivity in a recovering social woodpecker population
Conservation of endangered social wildlife in disturbance-prone forests is challenging because direct and indirect effects of management strategies developed at the time of species’ listing when population density is low may change under high-density conditions in locally recovered populations. Here, we used piecewise structural equation modeling to evaluate direct and indirect drivers of productivity in the federally endangered cooperatively breeding red-cockaded woodpecker Dryobates borealis (RCW) on Savannah River Site, South Carolina, USA. We estimated direct and indirect relationships among group size, neighboring group sizes, fledgling production, density of cavity tree clusters occupied by RCWs, area satisfying threshold criteria of ≥22 stems ha –1 of pines ≥35.6 cm diameter at breast height (dbh), <1.4 m 2 ha –1 basal area (BA) of hardwoods 7.6–22.9 cm dbh, and <6% hardwood canopy cover, and area treated with prescribed fire, and tested whether group size mediated indirect effects of area satisfying threshold criteria on fledgling production. Increases in area with ≥22 stems ha –1 of pines ≥35.6 cm dbh and <1.4 m 2 ha –1 BA of hardwoods 7.6–22.9 cm dbh, and area treated with prescribed fire, but not area with <6% hardwood canopy cover, had direct positive effects on group size. Group size and area treated with prescribed fire, but not area satisfying threshold criteria, had direct positive effects on fledgling production. The direct effect of neighboring group sizes on fledgling production was negative and smaller relative to the direct positive effect of group size on fledgling production. Overall, our results indicate positive direct effects of group size on fledgling production outweighed negative direct effects of neighboring group sizes, and that group size mediated positive indirect effects of area satisfying structural threshold criteria on fledgling production. These findings indicate that ongoing forest management aimed to increase area with ≥22 pines ha –1 ≥35.6 cm dbh and <1.4 m 2 ha –1 BA of hardwoods 7.6–22.9 cm dbh will promote large group sizes, which in turn improve fledgling production and offset costs of heightened competition with neighboring groups under high-density conditions. Additionally, positive effects of area treated with prescribed fire on RCW group size and fledgling production indicate prescribed fire has unique contributions to woodpecker productivity, likely via direct effects on forest structure and potentially indirect effects on arthropod prey available to foraging RCWs. Furthermore, by simultaneously accounting for multiple drivers of productivity in social wildlife, our study contributes to the understanding of how increases in social wildlife population sizes can alter previously documented habitat-fitness relationships.
prescribed fire↗
Population Genomics of Pseudocercospora griseola Reveals New Groups in the Middle American Clade and the Presence of the Endophytic Bacterium Achromobacter xylosoxidans
Angular leaf spot (ALS), caused by Pseudocercospora griseola is an important disease of common beans. P. griseola, is highly variable and has co-evolved with its host. In this study, 48 isolates of P. griseola from Puerto Rico, Guatemala, Honduras and Tanzania were sequenced (3RADseq), resulting in the de novo assembly of 42,214 contigs. Phylogenomic, population genetic structure and principal component analyses using 1,260 SNPs divided these isolates into two populations, Andean and Middle American, while the Middle American population was further divided into three sub-populations. There were moderate to high levels of differentiation between P. griseola populations, with pairwise Fst values ranging from 0.11 to 0.95. The Andean population was composed of isolates from Tanzania, and was separated from the Middle American population (Fst = 0.95). The Middle American population was separated into 3 subpopulations including isolates from: 1. Guatemala and Honduras, 2. Tanzania, and 3. Puerto Rico. Pathogenicity testing of 27 isolates from Puerto Rico, using 12 common bean differential lines, identified ten races, but these races were not associated with SNPs found in virulence genes. DNA of an endophytic bacterium (Achromobacter xylosoxidans) was found in seven mildly virulent isolates suggesting a possible role of the bacterium in the observed virulence patterns. To understand the evolution and diversity of P. griseola, further study of the virulence genes and the interactions among the endophytic bacterium, the fungus, and the host plant is required. Such information is critical to inform breeding strategies for the development of resistant germplasm and cultivars.
Serrato-Diaz, Luz M. [U.S. Department of Agricultu↗
The role of SAXS and molecular simulations in 3D structure elucidation of a DNA aptamer against lung cancer
Aptamers are short, single-stranded DNA or RNA oligonucleotide molecules that function as synthetic analogs of antibodies and bind to a target molecule with high specificity. Aptamer affinity entirely depends on its tertiary structure and charge distribution. Therefore, length and structure optimization are essential for increasing aptamer specificity and affinity. Here, we present a general optimization procedure for finding the most populated atomistic structures of DNA aptamers. Based on the existed aptamer LC-18 for lung adenocarcinoma, a new truncated LC-18 (LC-18t) aptamer LC-18t was developed. A three-dimensional (3D) shape of LC-18t was reported based on small-angle X-ray scattering (SAXS) experiments and molecular modeling by fragment molecular orbital or molecular dynamic methods. Molecular simulations revealed an ensemble of possible aptamer conformations in solution that were in close agreement with measured SAXS data. The aptamer LC-18t had stronger binding to cancerous cells in lung tumor tissues and shared the binding site with the original larger aptamer. The suggested approach reveals 3D shapes of aptamers and helps in designing better affinity probes.
59 BASIC BIOLOGICAL SCIENCES↗
Bayesian inference of structured latent spaces from neural population activity with the orthogonal stochastic linear mixing model
The brain produces diverse functions, from perceiving sounds to producing arm reaches, through the collective activity of populations of many neurons. Determining if and how the features of these exogenous variables (e.g., sound frequency, reach angle) are reflected in population neural activity is important for understanding how the brain operates. Often, high-dimensional neural population activity is confined to low-dimensional latent spaces. However, many current methods fail to extract latent spaces that are clearly structured by exogenous variables. This has contributed to a debate about whether or not brains should be thought of as dynamical systems or representational systems. Here, we developed a new latent process Bayesian regression framework, the orthogonal stochastic linear mixing model (OSLMM) which introduces an orthogonality constraint amongst time-varying mixture coefficients, and provide Markov chain Monte Carlo inference procedures. We demonstrate superior performance of OSLMM on latent trajectory recovery in synthetic experiments and show superior computational efficiency and prediction performance on several real-world benchmark data sets. We primarily focus on demonstrating the utility of OSLMM in two neural data sets: μ ECoG recordings from rat auditory cortex during presentation of pure tones and multi-single unit recordings form monkey motor cortex during complex arm reaching. We show that OSLMM achieves superior or comparable predictive accuracy of neural data and decoding of external variables (e.g., reach velocity). Most importantly, in both experimental contexts, we demonstrate that OSLMM latent trajectories directly reflect features of the sounds and reaches, demonstrating that neural dynamics are structured by neural representations. Together, these results demonstrate that OSLMM will be useful for the analysis of diverse, large-scale biological time-series datasets.
59 BASIC BIOLOGICAL SCIENCES↗
Imaging the photochemistry of cyclobutanone using ultrafast electron diffraction: Experimental results
We investigated the ultrafast structural dynamics of cyclobutanone following photoexcitation at λ = 200 nm using gas-phase megaelectronvolt ultrafast electron diffraction. Our investigation complements the simulation studies of the same process within this special issue. It provides information about both electronic state population and structural dynamics through well-separable inelastic and elastic electron scattering signatures. We observe the depopulation of the photoexcited S 2 state of cyclobutanone with n3s Rydberg character through its inelastic electron scattering signature with a time constant of (0.29 ± 0.2) ps toward the S 1 state. The S 1 state population undergoes ring-opening via a Norrish Type-I reaction, likely while passing through a conical intersection with S 0 . The corresponding structural changes can be tracked by elastic electron scattering signatures. These changes appear with a delay of (0.14 ± 0.05) ps with respect to the initial photoexcitation, which is less than the S 2 depopulation time constant. This behavior provides evidence for the ballistic nature of the ring-opening once the S 1 state is reached. The resulting biradical species react further within (1.2 ± 0.2) ps via two rival fragmentation channels yielding ketene and ethylene, or propene and carbon monoxide. Furthermore, our study showcases the value of both gas-phase ultrafast diffraction studies as an experimental benchmark for nonadiabatic dynamics simulation methods and the limits in the interpretation of such experimental data without comparison with such simulations.
Carbon monoxide↗
Infrared-line emission from planetary nebulae.
Planetary nebulae IR emission intensities, discussing radiative recombination, ionization equilibrium and fine structure level population
IONIZATION POTENTIAL↗
The Energy and Operational Impacts of Using 0-10V Control for LED Streetlights
Lighting systems have historically utilized either a proprietary control method, or one of a handful of standardized methods (e.g., 0-10V, DALI, DMX512) aimed at facilitating vendor interoperability. The utility and market success of the standardized methods has been limited for a variety of reasons. Although 0-10V is presently the most commonly available control interface for indoor and outdoor products in North America – even after the emergence of LED products and “connected lighting systems” with more modern network interfaces and luminaire-level sensors and intelligence – the use of 0-10V methods has significant tradeoffs. For instance, it is difficult to predict relative luminaire light output and input power at any particular control voltage, and performance across luminaires is inconsistent. This study characterizes 23 LED streetlights that claimed dimmability via a 0-10V interface, quantifies the performance variation found in market-available LED drivers, and explores the potential impact of the most recent 0-10V voluntary standard (ANSI C137.1-2022). Notably, the tested products were all manufactured prior to the release of this standard, and thus do not make compliance claims. Variation in response to 0-10V control voltages was expected to be more significant across different make/model luminaires than different units of the same make/model; the test population was structured based on this expectation. The 23 tested luminaires comprised 21 unique make/model streetlights from 14 different manufacturers. Three samples of one make/model streetlight were included in the test population to facilitate a limited exploration of unit-to-unit variation. The 21 unique make/model luminaires contained 20 unique make/model LED drivers from eight different driver manufacturers. Luminaire input power and current were measured at 11 control voltages (0.5 V and 1–10 V in 1 V increments).
32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
Geographic_Distribution_of_Genotypes_with_Structural_Variant
Aninteractive mapshowing the geographic distribution ofPopulus trichocarpagenotypes carrying a deletion structural variant overlaid with Mount Rainier volcanic hazard zones. Hazard layers including lahar inundation zones and pyroclastic flow zones can be toggled on and off and geographic origins are searchable by genotype or river system using the search bar.
09 BIOMASS FUELS↗