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At least 109 records · Page 6

The DYRKP1 kinase regulates cell wall degradation in Chlamydomonas by inducing matrix metalloproteinase expression

Abstract The cell wall of plants and algae is an important cell structure that protects cells from changes in the external physical and chemical environment. This extracellular matrix, composed of polysaccharides and glycoproteins, must be constantly remodeled throughout the life cycle. However, compared to matrix polysaccharides, little is known about the mechanisms regulating the formation and degradation of matrix glycoproteins. We report here that a plant kinase belonging to the dual-specificity tyrosine phosphorylation-regulated kinase (DYRKP1) family present in all eukaryotes regulates cell wall degradation after mitosis of Chlamydomonas reinhardtii by inducing the expression of matrix metalloproteinases. Without DYRKP1, daughter cells cannot disassemble parental cell walls and remain trapped inside for more than 10 days. On the other hand, the dual-specificity tyrosine phosphorylation-regulated kinase complementation lines show normal degradation of the parental cell wall. Transcriptomic and proteomic analyses indicate a marked downregulation of MMP gene expression and accumulation, respectively, in the dyrkp1 mutants. The mutants deficient in matrix metalloproteinases retain palmelloid structures for a longer time than the background strain, like dyrkp1 mutants. Our findings show that dual-specificity tyrosine phosphorylation-regulated kinase, by ensuring timely MMP expression, enables the successful execution of the cell cycle. Altogether, this study provides insight into the life cycle regulation in plants and algae.

Kim, Minjae (ORCID:0000000223561295)↗

Shadow poles in the alternative parametrization of R-matrix theory

In this work, we discover new, hitherto unknown, shadow poles in Brune’s alternative parametrization of R-matrix theory [C. R. Brune, Phys. Rev. C 66, 044611 (2002)]. Where these poles are, and how many, depends on how one continues R-matrix operators to complex wavenumbers (specially the shift S and penetration P functions). This has little consequence for the exact R-matrix formalism (past the last energy threshold), as we show one can still always fully reconstruct the scattering matrix with only the previously known alternative parameters (poles and corresponding resonance widths), for which there were as many poles as the number of levels Nλ. However, we generalize the alternative parametrization to the Reich-Moore formalism, and show that the choice of continuation is now critical as it changes the alternative parameters values (poles and residue widths are now complex). In order to establish nuclear libraries with alternative parameters, the nuclear community will thus have to decide what convention to adopt. We argue in favor of analytical continuation (against the legacy Lane and Thomas approach) in a follow-up article [P. Ducru, Phys. Rev. C, submitted (2020)]. We observe the first evidence of shadow poles in the alternative parametrization of R-matrix theory in isotope xenon 134 Xe spin-parity group J π = 1=2 (–) , and show how they indeed depend on the choice of continuation to complex wavenumbers.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Windowed multipole representation of R -matrix cross sections

Nuclear cross sections are basic inputs to any nuclear computation. Campaigns of experiments are fitted with the parametric R-matrix model of quantum nuclear interactions, and the resulting cross sections are documented—both pointwise and as resonance parameters (with uncertainties)—in standard evaluated nuclear data libraries (ENDF, JEFF, BROND, JENDL, CENDL, TENDL): these constitute our common knowledge of fundamental low-energy nuclear cross sections. In the past decade, a collaborative effort has been deployed to establish a new nuclear cross-section library format—the Windowed Multipole Library—with the goal of considerably reducing the computational cost of cross-section calculations in nuclear transport simulations. This work lays the theoretical foundations underpinning these efforts. From general R-matrix scattering theory, we derive the windowed multipole representation of nuclear cross sections. Though physically and mathematically equivalent to R-matrix cross sections, the windowed multipole representation is particularly well suited for subsequent temperature treatment of angle-integrated cross sections, in particular Doppler broadening, which is the averaging of cross sections over the thermal motion of the target atoms. Doppler broadening is of critical importance in neutron transport applications, as it ensures the stability of many nuclear reactors (negative thermal reactivity). Yet, Doppler broadening of nuclear cross sections has been a considerable bottleneck for nuclear transport computations, often requiring memory-costly pretabulations. We show that the windowed multipole representation can perform accurate Doppler broadening analytically (up to the first reaction threshold), from which we derive cross-section temperature derivatives to any order—all computable on the fly (without precalculations stored in memory). Furthermore, we here establish a way of converting the R-matrix resonance parameters uncertainty (covariance matrices) into windowed multipole parameters uncertainty. We show that generating stochastic nuclear cross sections by sampling from the resulting windowed multipole covariance matrix can reproduce the cross-section uncertainty in the original nuclear data file. The windowed multipole representation is therefore a novel nuclear physics formalism able to generate Doppler broadened stochastic nuclear cross sections on the fly, unlocking breakthrough computational gains for nuclear computations. Through this foundational paper, we hope to make the windowed multipole representation accessible, reproducible, and usable for the nuclear physics community, as well as provide the theoretical basis for future research on expanding its capabilities.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Microstructure and bonding between calcium aluminate cement‐containing gahnite–alumina matrix and refractory aggregates

Calcium aluminate cement enhances the thermomechanical properties of refractory castables through the formation of acicular calcium hexaluminate (CaO·6Al 2 O 3 ), Ca 2 Mg 2 Al 28 O 46 (CAM-I), and CaMg 2 Al 16 O 27 (CAM-II) phases in MgO- or MgAl 2 O 4 -containing castables. The compatibility of CA 6 with gahnite (ZnAl 2 O 4 ), and acicular Ca 2 Zn 2 Al 28 O 46 (CAZ-I) and CaZn 2 Al 16 O 27 (CAZ-II) phases formation have been previously reported. Here, in this work, the interaction between a CAC binder containing ZnAl 2 O 4 -Al 2 O 3 matrix with commonly used refractory aggregates such as tabular alumina (TA), alumina-rich (AR90, AR78) and stoichiometric (SM72) MgAl 2 O 4 spinels, and fused and dead-burned magnesia (FM, DBM, respectively) were investigated at 1650°C for 5 h. Microstructural analysis, using digital microscopy, scanning electron microscopy, and energy dispersive spectroscopy, revealed the formation of acicular CaZn 0.18 Al 11.82 O 18.91 , CAZ-I and CAZ-II grains, and strong interfacial bonding between the matrix and TA and spinel aggregates. FM and DBM were found to debond from the matrix. Thick interface layers were observed between the matrix and all the aggregates but TA. Null hypothesis significance testing (NHST) shows that the difference in the number of acicular grains between the interface zone and the bulk matrix (Z) is statistically significant for AR90/Z, SM72/Z, FM/Z, and DBM/Z interfaces, but not significant for TA/Z and AR78/Z. The role of the aggregates’ chemistry on the interfacial bonding and microstructure evolution is discussed.

Ramteke, Rajat Durgesh [Univ. of Alabama, Birmingh↗

Sorption Enhanced Mixed Matrix Membranes for Hydrogen (H 2 ) Purification and Carbon Dioxide (CO 2 ) Capture

The technical objective of this project was to develop sorption enhanced mixed matrix membranes with H 2 permeance of 500 gas permeance units (GPU) and H 2 /CO 2 selectivity of 30 at 150-200 °C. These membranes will be the central component in the design of membrane based systems for 90% capture of CO 2 from coal-derived syngas, with 95% CO 2 purity at a cost of electricity 30% less than baseline capture approaches. The unique approach in this proposal is to design crosslinked polymers containing Pd-based nanoparticles achieving strong H 2 sorption and size sieving ability and thus H 2 /CO 2 selectivity. The specific objectives for each budget period (BP) are described below. BP 1: Identify polymer matrix with strong size sieving ability and palladium (Pd)-containing nanomaterials to prepare freestanding mixed matrix films with H 2 permeability of 50 Barrer and H 2 /CO 2 selectivity of 30 at 150-200°C with simulated syngas. BP 2: Prepare and optimize thin film mixed matrix composite membranes materials with H 2 permeance of 500 GPU and H 2 /CO 2 selectivity of 30 at 150-200 °C, and complete the modification of the membrane test unit for the field test in the BP 3. BP 3: Conduct a 20-day field test of the membranes with real syngas at Center for Advanced Energy Research (CAER) of the University of Kentucky (UKy). During the BP2, we have successfully prepared thin-film composite (TFC) membranes based on mixed matrix materials (MMMs) containing Pd nanoparticles in polymers, and demonstrated their superior and robust performance for H 2 /CO 2 separation at 150 – 225 °C. (1) Production of the Pd based nanoparticles with a diameter of 4 nm has been scaled up to 200 mg/day. (2) We have prepared TFC membranes with H 2 permeance above 500 GPU and H 2 /CO 2 selectivity above 30 at temperatures up to 225 °C, which meet the targets for the BP2. (3) We have conducted parametric studies of TFC membranes with a mixed gas containing H 2 S and H 2 O and demonstrated the stability of the membranes. (4) We have established a new testing plan at the Center for Advanced Energy Studies (CAER) at the University of Kentucky because NCCC decided to shut down their gasifier. During this project, four Ph.D. students received the inter-disciplinary training and graduated, including Shailesh Konda, Maryam Omidvar, Deqiang Yin, and Lingxiang Zhu. One postdoctoral researcher (Dr. Liang Huang) and two Ph.D. students (Abhishek Kumar and Hien Nguyen) are involved in this project. The project leads to one provisional patent application, eight peer-reviewed articles, and one manuscript in preparation. The details are shown below.

01 COAL, LIGNITE, AND PEAT↗

Evaluation of XCT for Matrix Density Measurement of Particle Fuel Forms

Particle fuel forms generally consist of a dispersion of fuel, such as tristructural isotropic (TRISO) particles, within a refractory matrix (e.g., graphite or silicon carbide). The density of matrix materials for particle fuel forms is of interest for modeling fuel form strength and thermal properties and may be specified as a quality control parameter, depending on reactor design. Some of the uncertainty associated with traditional, manual approaches can be eliminated by performing x-ray computed tomography (XCT) on the fuel forms and applying image processing methods to generate a precise count of the number of particles. This also removes the need to include determination of particle count within each individual fuel form during fabrication. Unfortunately, reconstruction artifacts from high-Z uranium-bearing kernels prevent accurate measurement of individual particle volumes using this approach, so the use of mean particle mass and volume are still necessary for computation of average fuel form matrix density. This method of using XCT to count particles in individual fuel form for determination of average matrix density was applied to three archived compacts from the Advanced Gas Reactor Fuel Development and Qualification (AGR)-1 campaign, four archived compacts with uranium carbide/uranium oxide (UCO) TRISO from the AGR-2 campaign, and three archived UO 2 -TRISO compacts from the AGR-2 campaign. The resulting density values were compared with those previously reported, showing slight changes due to uncertainties in the previously used number of particles in each of these cylindrical, graphite matrix compacts.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Effects of Supercritical CO2 on Matrix Permeability of Unconventional Formations

We studied the effects of supercritical carbon dioxide (scCO2) on the matrix permeability of reservoir rocks from the Eagle Ford, Utica, and Wolfcamp formations. We measured permeability using argon before exposure of the samples to scCO2 over time periods ranging from days to weeks. We measured permeability (and the change of permeability with confining pressure) when both argon and scCO2 were the pore fluids. In all three formations, we generally observe a negative correlation between initial permeability and carbonate content—the higher the carbonate content, the lower the initial permeability. In clay- and organic-rich samples, swelling of the matrix resulting from adsorption decreased the permeability by about 50% when the pore fluid was scCO2 although this permeability change is largely reversible. In carbonate-rich samples, dissolution of carbonate minerals by carbonic acid irreversibly increased matrix permeability, in some cases by more than one order of magnitude. This dissolution also increases the pressure dependence of permeability apparently due to enhanced mechanical compaction. Despite these trends, we observed no general correlation between mineralogy and the magnitude of the change in permeability with argon before and after exposure to scCO2. Flow of scCO2 through μm-scale cracks appears to play an important role in determining matrix permeability and the pressure dependence of permeability. Extended permeability measurements show that while adsorption is nearly instantaneous and reversible, dissolution is time-dependent, probably owing to reaction kinetics. Our results indicate that the composition and microstructure of matrix flow pathways control both the initial permeability and how permeability changes after interaction with scCO2. Electron microscopy images with Back-Scattered Electron (BSE) and Energy Dispersive Spectroscopy (EDS) revealed dissolution and etching of calcite minerals and precipitation of calcium sulfide resulting from exposure to scCO2.

58 GEOSCIENCES↗

Reactive matrix infiltration of powder preforms

A reactive matrix infiltration process is described herein, which includes contacting a surface of a preform comprising reinforcement material particles with a molten infiltrant comprising a matrix material, the matrix material comprising an Al—Ce alloy, whereby the infiltrant at least partially fills spaces between the reinforcement material particles by capillary action and reacts with the reinforcement material particles to form a composite material form, the composite material comprising the matrix material, at least one intermetallic phase, and, optionally, reinforcement material particles. A composite material form also is described, which includes a plurality of reinforcement material particles comprising a metal alloy or a ceramic, a matrix material at least partially filling spaces between the reinforcement material particles; and at least one intermetallic phase surrounding at least some of the reinforcement material particles. The reinforcement material particles and intermetallic phase together may form a gradient core-shell structure.

Rios, Orlando↗

Two-Tower Quantum Matrix Chain Multiplication: Trading Qubits for Depth

Matrix chain multiplication -- computing $\mathcal{W} = M^{(0)}\cdots M^{(K-1)}$ where $M^{(k)} \in \mathbb{R}^{P_k \times P_{k+1}}$-- arises in scientific computing, machine learning, and graph analysis. Despite the importance of this problem, for chains of distinct matrices, the classical number of operations grows linearly with the chain length $K$ and polynomially in the matrix dimensions. We present \emph{Two-Tower Matrix Multiplication}, a quantum subroutine that encodes the product $\mathcal{W}$ of the $K$ matrices into a quantum state in circuit depth $\mathcal{O}(\max_{k} \mathrm{polylog} (P_k P_{k+1}))$, which is independent of~$K$ within the QRAM-based state-preparation model, whereas the qubit count is $\mathcal{O}\bigl(\sum_{k} \log P_k \bigr)$; the total gate count remains linear in $K$, so the gain is in the circuit depth. The construction interleaves state-preparation operators across two layers; within each layer, all operators act on disjoint registers and execute in parallel. This subroutine can be specialized for the chain-vector case, which computes the product of $K-1$ matrices applied to a vector. We prove the correctness of the subroutine for all $K$ and provide two implementations using the Qiskit and QCLAB frameworks. The subroutine is applicable to any downstream quantum algorithm that operates on a matrix encoded in the statevector, including norm estimation, graph-matrix powers, linear system solving, and quantum machine learning kernels.

Antonioli, Giacomo [Pisa U.] (ORCID:00090000668703↗

Target space entanglement in Matrix Models

We study target space entanglement in gauged multi-matrix models as models of entanglement between groups of D-branes separated by a planar entangling surface, paying close attention to the implementation of gauge invariance. We open with a review of target space entanglement between identical particles, which shares some important features (specifically a gauged permutation symmetry) with our main problem. For our matrix models, we implement a gauge fixing well-adapted to the entangling surface. In this gauge, we map the matrix model problem to that of entanglement of a U(1) gauge theory on a complete or all-to-all lattice. Matrix elements corresponding to open strings stretching across the entangling surface in the target space lead to interesting contributions to the entanglement entropy.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Compression of tokamak boundary plasma simulation data using a maximum volume algorithm for matrix skeleton decomposition

This report demonstrates satisfactory data compression of SOLPS-ITER simulation output ranging from 2D fields, 1D profiles, and 0D scalar variables with a novel matrix decomposition approach. The singular value decomposition (SVD) scales poorly for large matrix sizes and is unsuited to the application on high dimensional data common to fusion plasma physics simulation. In this work, we employ the columns-submatrix-rows (CUR) matrix factorization technique in order to compute a low-rank approximation up to two orders of magnitude faster than the SVD, but within a nominal L2-norm relative error of ε = 10 –2 . In addition, the CUR approach maintains the original format of the data, in its extracted columns and rows, allowing for interpretable data storage at the original resolution of the simulation. We utilize an iterative algorithm to compute the CUR decomposition of simulation output by maximizing the volume, or linearly independent information content, of a low-rank submatrix contained within the data. Experiments over $\textit{n} × \textit{n}$ randomized test matrices with embedded rank-deficient features show that this maximum volume implementation of CUR matrix approximation has reduced asymptotic computational complexity on the order of n compared to the SVD, which scales approximately as $n^3$. These results show that the CUR technique can be used to effectively select time step snapshots (columns) of over 140 SOLPS-ITER output variables and the associated discretized coordinate timeseries (rows) allowing for reconstruction of the complete simulation dynamics.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Determination of oxidation rates and volatile oxidation products for HTGR graphite matrix material exposed to steam atmospheres

High-temperature gas-cooled reactors (HTGRs) in operation use tristructural isotropic (TRISO) particles embedded in graphite and carbonized resin matrix to form the fuel element. This graphite matrix material serves as a supportive structural element, heat transfer medium, and neutron moderator. In HTGR designs, fuel compacts are exposed to helium coolant, which facilitates high outlet temperatures (750°C 2 O, 800°C 2 , and H 2 , are quantified in varied oxidant atmospheres using a coupled thermogravimetric analyzer and mass spectrometer. Furthermore, oxidation rates reported here for varied steam (H 2 O [g]) atmospheres are predominantly linear and comparable with literature values in the range of tested temperatures (800–1200°C). Changes in dominant matrix oxidation products from primarily CO to a mixture of CO, CO 2 , and H 2 were observed at higher temperatures (≥1000°C) and steam atmospheres (≥5 kPa pH 2 O). Kinetic data indicates that there was no shift in oxidation regime with chemical oxidation occurring at all temperatures and H2O (g) atmospheres tested. These data provide insight into the oxidation behavior of graphite matrix material and will inform future testing conditions, notably mixed atmospheric conditions, of HTGR fuel elements.

36 MATERIALS SCIENCE↗

Feeder Power Disaggregation: A Data-Efficient Matrix Completion Approach

This paper presents a data-driven algorithm for the feeder power disaggregation problem in distribution systems. Leveraging spatio-temporal power patterns in residential homes, residential power is discomposed into three components: sparse-switching loads, periodic loads, and photovoltaic (PV) generation, which are characterized through the design of two sparse matrices and a low-rank matrix. The matrix completion process is data-efficient because of the matrix sparsity and low rankness, along with the use of power system models. The proposed approach is tested using real-world residential data set on a 33-bus distribution system, demonstrating accurate power disaggregation with efficient matrix completion.

distribution system↗

Feeder Power Disaggregation: A Data-Efficient Matrix Completion Approach: Preprint

This paper presents a data-driven algorithm for the feeder power disaggregation problem in distribution systems. Leveraging spatio-temporal power patterns in residential homes, residential power is discomposed into three components: sparse-switching loads, periodic loads, and photovoltaic generation, using two sparse matrices and a rank-one matrix. The matrix completion process is data-efficient because of the matrix sparsity and low rankness, along with the use of power system models. The proposed approach is tested using real-world residential datasets on a 33-bus distribution system, demonstrating accurate power disaggregation with efficient matrix completion.

distribution system↗

What is the iε for the S-matrix?

Can the S-matrix be complexified in a way consistent with causality? Since the 1960's, the affirmative answer to this question has been well-understood for 2→2 scattering of the lightest particle in theories with a mass gap at low momentum transfer, where the S-matrix is analytic everywhere except at normal-threshold branch cuts. We ask whether an analogous picture extends to realistic theories, such as the Standard Model, that include massless fields, UV/IR divergences, and unstable particles. Especially in the presence of light states running in the loops, the traditional iε prescription for approaching physical regions might break down, because causality requirements for the individual Feynman diagrams can be mutually incompatible. We demonstrate that such analyticity problems are not in contradiction with unitarity. Instead, they should be thought of as finite-width effects that disappear in the idealized 2→2 scattering amplitudes with no unstable particles, but might persist at higher multiplicity. To fix these issues, we propose an iε -like prescription for deforming branch cuts in the space of Mandelstam invariants without modifying the analytic properties. This procedure results in a complex strip around the real part of the kinematic space, where the S-matrix remains causal. In addition to giving a pedagogical introduction to the analytic properties of the perturbative S-matrix from a modern point of view, we illustrate all the points on explicit examples, both symbolically and numerically. Furthermore, to help with the investigation of related questions, we introduce a number of tools, including holomorphic cutting rules, new approaches to dispersion relations, as well as formulae for local behavior of Feynman integrals near branch points.

Anomalous thresholds↗

An effective matrix model for dynamical end of the world branes in Jackiw-Teitelboim gravity

We study Jackiw-Teitelboim gravity with dynamical end of the world branes in asymptotically nearly AdS2 spacetimes. We quantize this theory in Lorentz signature, and compute the Euclidean path integral summing over topologies including dynamical branes. The latter will be seen to exactly match with a modification of the SSS matrix model. The resolution of UV divergences in the gravitational instantons involving the branes will lead us to understand the matrix model interpretation of the Wilsonian effective theory perspective on the gravitational theory. We complete this modified SSS matrix model nonperturbatively by extending the integration contour of eigenvalues into the complex plane. Furthermore, we give a new interpretation of other phases in such matrix models. We derive an effective W(Φ) dilaton gravity, which exhibits similar physics semiclassically. In the limit of a large number of flavors of branes, the effective extremal entropy S0,eff has the form of counting the states of these branes.

2D Gravity↗

Entanglement in the Quantum Hall Matrix Model

Characterizing the entanglement of matrix degrees of freedom is essential for understanding the holographic emergence of spacetime. The Quantum Hall Matrix Model is a gauged U(N) matrix quantum mechanics with two matrices whose ground state is known exactly and describes an emergent spatial disk with incompressible bulk dynamics. We define and compute an entanglement entropy in the ground state associated to a cut through the disk. There are two contributions. A collective field describing the eigenvalues of one of the matrices gives a gauge-invariant chiral boundary mode leading to an expected logarithmic entanglement entropy. Further, the cut through the bulk splits certain ‘off-diagonal’ matrix elements that must be duplicated and associated to both sides of the cut. Sewing these duplicated modes together in a gauge-invariant way leads to a bulk ‘area law’ contribution to the entanglement entropy. All of these entropies are regularized by finite N.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Transport Upscaling under Flow Heterogeneity and Matrix-Diffusion in Three-Dimensional Discrete Fracture Networks

For this work, we investigate the combined effects of network scale flow variability and retention due to matrix-diffusion on the scaling behavior of transport through fractured media. Two of the principal mechanisms controlling the transport of solutes through fractured low-permeability media are broad distributions of flow velocities and retention times in the solid matrix. We study the relative impact of these two processes under different initial conditions using a set of three-dimensional discrete fracture network simulations. We use these simulations to develop and calibrate an upscaled continuous time random walk (CTRW) approach for advective transport based on an Ornstein-Uhlenbeck model for the particle velocities that accounts for the fracture-matrix coupling using a compound Poisson process. This CTRW model can be conditioned on the initial solute distribution and allows to observe late-time scaling behavior at distances beyond what is feasible to observe using high-fidelity direct numerical simulations. We determine that the initial distribution of particles leads to marked differences in the persistent long-term scale behavior in the solute travel time distributions, even those undergoing retention due to matrix diffusion through implementation and analysis of the model.

54 ENVIRONMENTAL SCIENCES↗