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At least 109 records · Page 6

Impact of late-time neutrino emission on the diffuse supernova neutrino background

In the absence of high-statistics supernova neutrino measurements, estimates of the diffuse supernova neutrino background (DSNB) hinge on the precision of simulations of core-collapse supernovae. Understanding the cooling phase of protoneutron star (PNS) evolution (≳ 1 s after core bounce) is crucial, since approximately 50% of the energy liberated by neutrinos is emitted during the cooling phase. We model the cooling phase with a hybrid method by combining the neutrino emission predicted by 3D hydrodynamic simulations with several cooling-phase estimates, including a novel two-parameter correlation depending on the final baryonic PNS mass and the time of shock revival. We find that the predicted DSNB event rate at Super-Kamiokande can vary by a factor of ~2–3 depending on the cooling-phase treatment. Here we also find that except for one cooling estimate, the range in predicted DSNB events is largely driven by the uncertainty in the neutrino mean energy. With a good understanding of the late-time neutrino emission, more precise DSNB estimates can be made for the next generation of DSNB searches.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Constraints on late-forming exploding black holes

Black holes can be produced in collapse of small-scale dark matter structures, which can happen at any time from the early to present-day Universe. Microstructure black holes (MSBHs) can have a wide range of masses. Here, small MSBHs evaporate via Hawking radiation with lifetimes shorter than the age of the Universe, but they are not subject to the usual early-Universe bounds on the abundance of small primordial black holes. We investigate the possible signal of such a population of exploding, late-forming black holes, constraining their abundance with observations from diffuse extragalactic gamma- and x-ray sources, the Galactic Center, and dwarf spheroidal galaxies.

79 ASTRONOMY AND ASTROPHYSICS↗

Orbital correlations in ultrathin films of late transition metals

We develop a two-orbital Hubbard model of electron correlations in ultrathin (111)-oriented fcc films of late transition metals such as Co and Ni. Our model indicates that the Mott-Hund’s interaction results in ferromagnetic nearest-neighbor orbital correlations. Frustration associated with the mismatch between orbital and crystal symmetries prevents orbital ordering, resulting in the orbital liquid state. This state can be manifested in phenomena involving spin-orbit coupling, such as magnetic anisotropy.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Multiprobe constraints on early and late time dark energy

We perform a multiprobe analysis combining cosmic microwave background (CMB) data from Planck and the Atacama Cosmology Telescope (ACT), ACT CMB lensing, and large-scale structure (LSS) measurements from the Dark Energy Spectroscopic Instrument (DESI), including DESI Legacy Imaging Survey (LS) galaxies and baryon acoustic oscillations (BAOs). We present the first 5×2 pt analysis of ACT DR6 lensing, DESI LS, and Planck Integrated Sachs-Wolfe (ISW). Within Λ⁢CDM, this yields 𝑆 8 =𝜎 8 ⁢(Ω 𝑚 /0.3) 0.5 =0.819 ±0.016, in good agreement with primary CMB inferences and provides a sound-horizon-free Hubble constant constraint of 𝐻 0 =70.0±4.4 km s −1 Mpc −1 . Then, combining with CMB primary and BAO, we reconfirm a CMB–BAO discrepancy in the Ω 𝑚 –$\frac{𝐷𝑣}{𝑟𝑑}$ plane, which is heightened when combining BAO with the 5 ×2 pt data vector. We explore two dark-energy extensions that may reconcile this: an early-time modification, early dark energy (EDE), and late-time dynamical dark energy (DDE) parametrized by 𝑤 0 ⁢𝑤 𝑎 . For CMB primary +BAO +5 ×2 pt, we find a 3.3⁢𝜎 preference for DDE over Λ⁢CDM, while EDE is modestly favored at 2.3⁢𝜎. The models address different shortcomings of Λ⁢CDM: DDE relaxes the neutrino mass bound (𝑀 𝜈 <0.17 eV vs <0.050 eV under Λ⁢CDM), making it compatible with neutrino oscillation measurements, while EDE raises the Hubble constant to 𝐻 0 =70.5±1.2 km s −1 Mpc −1 , easing the discrepancy with SH0ES. However, neither model resolves both issues simultaneously. Our analysis indicates that both DDE and EDE remain viable extensions of Λ⁢CDM within current uncertainties and demonstrates the capacity of combined probes to place increasingly stringent constraints on cosmological parameters.

79 ASTRONOMY AND ASTROPHYSICS↗

Isotropy of Hubble Expansion in the Early and Late Universe

We test the isotropy of Hubble expansion by combining several probes for the first time, constructing full-sky maps of expansion rate variation using Type Ia supernovae, fundamental plane galaxies, and cosmic microwave background (CMB) temperature fluctuations. We find no hint of anisotropy or correlation between early- and late-Universe expansion across all systematic models. The 99% confidence upper limits on expansion rate anisotropy are 0.39% for low-redshift supernovae, 0.95% for high-redshift CMB, and 0.37% when combined at a 60-degree smoothing scale. A significant anomaly in the fundamental plane residual map may reflect systematics in the current dark energy spectroscopic instrument dataset, as evidenced by the absence of cross-correlation with other tracers and its correlation with spatial density variations.

Zhou, Alan Junzhe [Chicago U.; Chicago U., KICP] (↗

Understanding local plant extinctions before it is too late: bridging evolutionary genomics with global ecology

Understanding evolutionary genomic and population processes within a species range is key to anticipating the extinction of plant species before it is too late. However, most models of biodiversity risk under global change do not account for the genetic variation and local adaptation of different populations. Population diversity is critical to understanding extinction because different populations may be more or less susceptible to global change and, if lost, would reduce the total diversity within a species. Here, two new modeling frameworks advance our understanding of extinction from a population and evolutionary angle: Rapid climate change-driven disruptions in population adaptation are predicted from associations between genomes and local climates. Furthermore, losses of population diversity from global land-use transformations are estimated by scaling relationships of species' genomic diversity with habitat area. Overall, these global eco-evolutionary methods advance the predictability – and possibly the preventability – of the ongoing extinction of plant species.

60 APPLIED LIFE SCIENCES↗

Chalcogen isotopes reveal limited volatile contribution from late veneer to Earth

The origin of Earth’s volatile elements is highly debated. Comparing the chalcogen isotope ratios in the bulk silicate Earth (BSE) to those of its possible building blocks, chondritic meteorites, allows constraints on the origin of Earth’s volatiles; however, these comparisons are complicated by potential isotopic fractionation during protoplanetary differentiation, which largely remains poorly understood. Using first-principles calculations, we find that core-mantle differentiation does not notably fractionate selenium and tellurium isotopes, while equilibrium evaporation from early planetesimals would enrich selenium and tellurium in heavy isotopes in the BSE. The sulfur, selenium, and tellurium isotopic signatures of the BSE reveal that protoplanetary differentiation plays a key role in establishing most of Earth’s volatile elements, and a late veneer does not substantially contribute to the BSE’s volatile inventory.

58 GEOSCIENCES↗

Investigating late-stage particle production in pp collisions with balance functions

Balance functions have been regarded in the past as a method of investigating the late-stage hadronization found in the presence of a strongly-coupled medium. They are also used to constrain mechanisms of particle production in large and small collision systems. Charge balance functions for inclusive and identified particle pairs are reported as a function of charged particle multiplicity in proton–proton collisions simulated with the PYTHIA8 and the EPOS4 models. The charge balance functions of inclusive, pion, kaon, and proton pairs exhibit amplitudes and shapes that depend on particle species and differ significantly in the two models due to the different particle production mechanisms implemented in PYTHIA and EPOS. The shapes and amplitudes also evolve with multiplicity in both models. In addition, the evolution of the longitudinal rms width and that of balance functions integrals with multiplicity (and average transverse momentum) feature significant differences in the two models.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Middle and Late-Holocene coastal environments of far Southeastern Russia as inferred from palynological and diatom data

Existing discontinuous palynological records from coastal and river valley exposures, with varying quality of radiocarbon control, suggested that the regional Holocene climate in southern areas of the Russian Far East was characterized by as many as 10 fluctuations in temperature and/or precipitation. In this study, palynological data from Zerkalnoye Lake, located on the western coast of the Sea of Japan, indicate a gradual decline in temperature through the Middle and Late-Holocene with a Holocene thermal maximum between 8800 and 5500 cal yr BP. Three wetter than present intervals, marked by an increase in Pinus koraiensis, occurred c. 3600–3500 cal yr BP, 2340–2050 cal yr BP, and 1830–1800 cal yr BP. The Zerkalnoye record shows the dominance of Quercus-broadleaf forests during the Middle and Early Holocene, although Quercus shows a gradual decrease as climate cooled during this interval. Diatom analysis of the Zerkalnoye sediments documents that the site was a shallow bay or coastal lagoon until c. 3540 cal yr BP. After that time, a freshwater lake was established, which had variable marine influences probably caused by sea level changes following deglaciation. The diatom data indicate a cool water interval between 2900 and 2580 cal yr BP, also noted in other sites in the region. Changes in the basin’s depositional environment do not affect the palynological record, indicating such sites can provide reliable paleovegetational and paleoclimatic records. In conclusion, the discrepancies of the various regional paleoclimatic scenarios indicate the need for the further collection of continuous records from coastal to alpine zones in this region of northeastern Asia.

Environmental sciences↗

Granick revisited: Synthesizing evolutionary and ecological evidence for the late origin of bacteriochlorophyll via ghost lineages and horizontal gene transfer

Photosynthesis—both oxygenic and more ancient anoxygenic forms—has fueled the bulk of primary productivity on Earth since it first evolved more than 3.4 billion years ago. However, the early evolutionary history of photosynthesis has been challenging to interpret due to the sparse, scattered distribution of metabolic pathways associated with photosynthesis, long timescales of evolution, and poor sampling of the true environmental diversity of photosynthetic bacteria. Here, we reconsider longstanding hypotheses for the evolutionary history of phototrophy by leveraging recent advances in metagenomic sequencing and phylogenetics to analyze relationships among phototrophic organisms and components of their photosynthesis pathways, including reaction centers and individual proteins and complexes involved in the multi-step synthesis of (bacterio)-chlorophyll pigments. We demonstrate that components of the photosynthetic apparatus have undergone extensive, independent histories of horizontal gene transfer. This suggests an evolutionary mode by which modular components of phototrophy are exchanged between diverse taxa in a piecemeal process that has led to biochemical innovation. We hypothesize that the evolution of extant anoxygenic photosynthetic bacteria has been spurred by ecological competition and restricted niches following the evolution of oxygenic Cyanobacteria and the accumulation of O 2 in the atmosphere, leading to the relatively late evolution of bacteriochlorophyll pigments and the radiation of diverse crown group anoxygenic phototrophs. This hypothesis expands on the classic “Granick hypothesis” for the stepwise evolution of biochemical pathways, synthesizing recent expansion in our understanding of the diversity of phototrophic organisms as well as their evolving ecological context through Earth history.

58 GEOSCIENCES↗

Unraveling the mechanism of recognition of the 3’ splice site of the adenovirus major late promoter intron by the alternative splicing factor PUF60

Pre-mRNA splicing is critical for achieving required amounts of a transcript at a given time and for regulating production of encoded protein. A given pre-mRNA may be spliced in many ways, or not at all, giving rise to multiple gene products. Numerous splicing factors are recruited to pre-mRNA splice sites to ensure proper splicing. One such factor, the 60 kDa poly(U)-binding splicing factor (PUF60), is recruited to sites that are not always spliced, but rather function as alternative splice sites. In this study, we characterized the interaction of PUF60 with a splice site from the adenovirus major late promoter (the AdML 3' splice site, AdML3’). We found that the PUF60–AdML3’ dissociation constants are in the micromolar range, with the binding affinity predominantly provided by PUF60’s two central RNA recognition motifs (RRMs). A 1.95 Å crystal structure of the two PUF60 RRMs in complex with AdML3’ revealed a dimeric organization placing two stretches of nucleic acid tracts in opposing directionalities, which can cause looping of nucleic acid and explain how PUF60 affects pre-mRNA geometry to effect splicing. Solution characterization of this complex by light-scattering and UV/Vis spectroscopy suggested a potential 2:1 (PUF60 2 :AdML3’) stoichiometry, consistent with the crystal structure. This work defines the sequence specificity of the alternative splicing factor PUF60 at the pre-mRNA 3’ splice site. Our observations suggest that control of pre-mRNA directionality is important in the early stage of spliceosome assembly, and advance our understanding of the molecular mechanism by which alternative and constitutive splicing factors differentiate among 3’ splice sites.

59 BASIC BIOLOGICAL SCIENCES↗

Data from: "Colonisation of the alpine tundra by trees: alpine neighbours assist late-seral but not early-seral conifer seedlings"

This archive contains data used to support conclusions made in “Colonisation of the alpine tundra by trees: alpine neighbours assist late-seral but not early-seral conifer seedlings”, by Jabis et al., 2020. Data were collected in the alpine field location of the Alpine Treeline Warming Experiment (ATWE), on Niwot Ridge, in the Front Range of the Colorado Rocky Mountains, USA.This package includes survivorship and physiology data for limber pine (Pinus flexilis), Engelmann spruce (Picea engelmannii), and Rocky Mountain snowlover (Chionophila jamesii). Site climate data such as soil moisture and temperature are also included. This data package contains ten comma-separated-values (.csv) files, and two rich-text-format (.rtf) files all compressed within one folder named “Neighbor_data_repository.zip”. Both file types can be opened by text-edit softwares such as TextEdit (Mac) and Notepad (Windows). The files are also compatible with analyses softwares such as R. .csv files can also be opened by Microsoft Excel. Two geospatial datasets are also included in this archive: one keyhole markup language (.kml) file with four points marking the corners of the study site, and a compressed file containing two ESRI shapefiles (.shp). The .kml files can be opened with Google Earth or Google Maps, and the shapefiles can be opened using any geographic information system applications, including the entire ArcGIS suite, and QGIS. -------------------------------------------------------------------------------------------------------------------------------------------------------The elevation mountain treeline is expected to shift upward with climate warming, and seed germination and seedling survival are critical local controls on treeline expansion. Neighboring alpine plants, either through competition for resources or through altering the microclimate, can also affect seedling emergence and survival. We asked whether establishing tree seedlings and an alpine herb are similarly sensitive to alpine plant neighbours under ambient and altered climate. We imposed active heating, watering, and neighbor removal experiments for emerging conifer seedlings and an alpine herb.We compared target plant survival, photosynthetic efficiency, and water use efficiency under ambient and experimental conditions. Picea engelmannii seedlings showed lower survival compared with Pinus flexilis three weeks following neighbour removal, and after 1 year only survived in watered plots. Pinus seedlings responded to neighbour removal by lowering the quantum yield of photosynthesis (ϕPSII). Contrary to expectations from the stress gradient hypothesis, survival was reduced without neighbours near the low-elevation range limit of Chionophila jamesii.

54 ENVIRONMENTAL SCIENCES↗

Metagenome-assembled genomes from topsoils along a hillslope water gradient across early snowmelt to late summer in East River, CO

Drought is changing the American Mountain West at unprecedented rates with unknown consequences to soil microbiome composition and function. As a part of LBNL Watershed Science Focus Area (SFA), we investigated shifts in microbial community and transcriptional activity on a subalpine conifer-meadow transition zone throughout the summer of 2023 as soil dried down. This work took place in Crested Butte, CO on Snodgrass mountain, using a proxy for drought conditions.Here we present metagenome assembled genomes (MAGs) for the bacterial and archaeal community at 0-10cm from three sites along a hillslope water gradient across five timepoints from early snowmelt to late summer. 42 metagenomes were sequenced at Joint Genome Institute (JGI) and can be found under the JGI GOLD (Genomes Online Database) sequencing project Gs0166660. Metagenomes were assembled through an inhouse pipeline (see methods), binned using four autobinners (concoct, maxbin2, metabat2, and vamb) and consolidated using dastool. The consolidated bins from all metagenomes were pooled, filtered by completeness (>70%) and contamination (<10%), and dereplicated at 95% ANI using drep. This dataset (1) a zip file of 157 MAGs (as fasta files, Gs0166660_bins_tar.gz), (2) sample metadata file with sample IGSNs (International Generic Sample Numbers) (samples.csv), (3) bounding box coordinates for the sampled locations (Gs0166660.kml), (4) metagenome assembly and coassembly metadata file listing IMG/M (Integrated Microbial Genomes/Metagenomes) metagenome accessions linking samples to metagenomes (EastRiver_Drought_ESSDive_Metadata.csv), (5) location metadata file (locations.csv), (6) file-level metadata file (flmd.csv) and (7) data dictionary (dd.csv) file.This work was supported by the Watershed Function Science Focus Area at Lawrence Berkeley National Laboratory funded by the US Department of Energy, Office of Science, Biological and Environmental Research under Contract No. DE-AC02-05CH11231.

54 ENVIRONMENTAL SCIENCES↗

Peripheral Blood Transcript Signatures after Internal 131 I-mIBG Therapy in Relapsed and Refractory Neuroblastoma Patients Identifies Early and Late Biomarkers of Internal 131 I Exposures

131 I-metaiodobenzylguanidine ( 131 I-mIBG) is a targeted radiation therapy developed for the treatment of advanced neuroblastoma. We have previously shown that this patient cohort can be used to predict absorbed dose associated with early 131 I exposure, 72 h after treatment. We now expand these studies to identify gene expression differences associated with 131 I-mIBG exposure 15 days after treatment. Total RNA from peripheral blood lymphocytes was isolated from 288 whole blood samples representing 59 relapsed or refractory neuroblastoma patients before and after 131 I-mIBG treatment. We found that several transcripts predictive of early exposure returned to baseline levels by day 15, however, selected transcripts did not return to baseline. At 72 h, all 17 selected pathway-specific transcripts were differentially expressed. Transcripts CDKN1A (P < 0.000001), FDXR (P < 0.000001), DDB2 (P < 0.000001), and BBC3 (P < 0.000001) showed the highest up-regulation at 72 h after 131 I-mIBG exposure, with mean log2 fold changes of 2.55, 2.93, 1.86 and 1.85, respectively. At day 15 after 131I-mIBG, 11 of the 17 selected transcripts were differentially expressed, with XPC, STAT5B, PRKDC, MDM2, POLH, IGF1R, and SGK1 displaying significant up-regulation at 72 h and significant down-regulation at day 15. Interestingly, transcripts FDXR (P = 0.01), DDB2 (P = 0.03), BCL2 (P = 0.003), and SESN1 (P < 0.0003) maintained differential expression 15 days after 131 I-mIBG treatment. These results suggest that transcript levels for DNA repair, apoptosis, and ionizing radiation-induced cellular stress are still changing by 15 days after 131 I-mIBG treatment. Our studies showcase the use of biodosimetry gene expression panels as predictive biomarkers following early (72 h) and late (15 days) internal 131 I exposure. Our findings also demonstrate the utility of our transcript panel to differentiate exposed from non-exposed individuals up to 15 days after exposure from internal 131 I.

63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTAN↗

Long Island Steatite Sourcing from Rhode Island Quarries During the Late Holocene Era

This study aimed to investigate the possible sourcing of Long Island steatite artifacts from quarries in Rhode Island. Seven steatite samples from archeological sites on Long Island including Nassau County, Suffolk County (North Fork and South Fork) and Shelter Island were compared to two Rhode Island quarry sample putative sources using X-ray fluorescence (XRF) microscopy at the Submicron Resolution X-ray spectroscopy (SRX) beamline of the National Synchrotron Light Source II at Brookhaven National Laboratory. The site-derived steatite samples displayed numerous similarities in elemental composition compared to the two Rhode Island quarries, Oaklawn and Ochee Springs. This study provides new evidence to support the possible sourcing of Long Island steatite from Rhode Island during the late Holocene era.

54 ENVIRONMENTAL SCIENCES↗

Long Island Steatite Sourcing from Rhode Island Quarries During the Late Holocene Era

This study aimed to investigate the possible sourcing of Long Island steatite artifacts from quarries in Rhode Island. Seven steatite samples from archeological sites on Long Island including Nassau County, Suffolk County (North Fork and South Fork) and Shelter Island were compared to two Rhode Island quarry sample putative sources using X-ray fluorescence (XRF) microscopy at the Submicron Resolution X-ray spectroscopy (SRX) beamline of the National Synchrotron Light Source II at Brookhaven National Laboratory. The site-derived steatite samples displayed numerous similarities in elemental composition compared to the two Rhode Island quarries, Oaklawn and Ochee Springs. This study provides new evidence to support the possible sourcing of Long Island steatite from Rhode Island during the late Holocene era.

54 ENVIRONMENTAL SCIENCES↗

Chlorophyll fluorescence is a potential indicator to measure photochemical efficiency in early to late soybean maturity groups under changing day lengths and temperatures

In this study, we employed chlorophyll a fluorescence technique, to indicate plant health and status in response to changing day lengths (photoperiods) and temperatures in soybean early and late maturity groups. Chlorophyll a fluorescence study indicates changes in light reactions in photosystem II. Experiments were performed for 3-day lengths (12.5, 13.5, and 14.5 h) and five temperatures (22/14°C, 26/18°C, 30/22°C, 34/26°C, and 40/32°C), respectively. The I-P phase declined for changing day lengths. Active reaction centers decreased at long day length for maturity group III. We observed that low temperatures impacted the acceptor side of photosystem II and partially impacted electron transport toward the photosystem I end electron acceptor. Results emphasized that higher temperatures (40/32°C) triggered damage at the oxygen-evolving complex and decreased electron transport and photosynthesis. We studied specific leaf areas and aboveground mass. Aboveground parameters were consistent with the fluorescence study. Chlorophyll a fluorescence can be used as a potential technique for high-throughput phenotyping methods. The traits selected in the study proved to be possible indicators to provide information on the health status of various maturity groups under changing temperatures and day lengths. These traits can also be deciding criteria for breeding programs to develop inbreed soybean lines for stress tolerance and sensitivity based on latitudinal variations.

59 BASIC BIOLOGICAL SCIENCES↗

TOI-677b: A Warm Jupiter (P = 11.2 days) on an Eccentric Orbit Transiting a Late F-type Star

We report the discovery of TOI-677 b, first identified as a candidate in light curves obtained within Sectors 9 and 10 of the Transiting Exoplanet Survey Satellite (TESS) mission and confirmed with radial velocities. TOI-677 b has a mass of M{sub p} = 1.236{sub −0.067}{sup +0.069} M{sub J}, a radius of R{sub P} = 1.170±0.03 R{sub J}, and orbits its bright host star (V = 9.8 mag) with an orbital period of 11.23660±0.00011 d, on an eccentric orbit with e=0.435±0.024. The host star has a mass of M{sub ⋆} = 1.181±0.058 M{sub ⊙}, a radius of R{sub ⋆} = 1.28{sub −0.03}{sup +0.03} R{sub ⊙}, an age of 2.92{sub −0.73}{sup +0.80} Gyr and solar metallicity, properties consistent with a main-sequence late-F star with T{sub eff}=6295±77 K. We find evidence in the radial velocity measurements of a secondary long-term signal, which could be due to an outer companion. The TOI-677 b system is a well-suited target for Rossiter–Mclaughlin observations that can constrain migration mechanisms of close-in giant planets.

79 ASTRONOMY AND ASTROPHYSICS↗