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NASA NTRS2001

High Frequency, Long Time Series Measurements from the Bermuda Testbed Mooring in Support of SIMBIOS

It has been recognized that optical moorings are important platforms for the validation of Sea-Viewing Wide Field-of-view Sensor (SeaWiFS). It was recommended that optical moorings be maintained in order to: (1) provide long-term time series comparisons between in situ and SeaWIFS measurements of normalized water-leaving radiance; (2) develop and test algorithms for pigment biomass and phytoplankton primary productivity; and (3) provide long-term, virtually continuous in situ observations which can be used to determine and optimize the accuracy of derived satellite products. These applications require the use of in situ radiometers for long periods of time to evaluate and correct for inherent satellite undersampling (aliasing and biasing) and degradation of satellite color sensors (e.g., drifts as experienced by the Coastal Zone Color Scanner). The Bermuda Testbed Mooring (BTM) program was initiated in 1994 at a site located about 80km southeast of Bermuda in waters of about 4530 m depth. In August 1997, with NASA's support, we started to provide the Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) program with large volumes of high frequency, long-term time-series bio-optical data from the BTM for SeaWiFS satellite ocean color groundtruthing and algorithm development. This NASA supported portion of the BTM activity spanned three years and covered five BTM deployments. During these three years, the quality of radiometric data has improved dramatically. Excellent agreement between BTM moored data and both SeaWiFS and nearby ship profile radiometric data demonstrate that technical advances in the moored optical observations have reduced the major difficulties that moored platforms face: biofouling and less frequent calibration.

Dickey, Tommy↗
NASA NTRS2001

High Altitude Measurements of Radiance at High Spectral and Spatial Resolution for SIMBIOS Sensor Calibration, Validation, and Intercomparisons

The successful combination of data from different ocean color sensors depends on the correct interpretation of signal from each of these sensors. Ideally, the sensor measured signals are calibrated to geophysical units of spectral radiance, and sensor artifacts are removed and corrected. The calibration process resamples the signal into a common radiometric data space so that subsequent ocean color algorithms that are applied to the data are based on physical processes and are inherently sensor independent. The objective of this project is to calibrate and validate the on-orbit radiometric characteristics of Sea-Viewing Wide Field-of-view Sensor (SeaWiFS) with underflights of NASA's calibrated Airborne Visible/Infrared Imaging Spectrometer (AVIRIS). This objective is feasible because AVIRIS measures the same spectral range as SeaWIFS at higher spectral resolution. In addition to satellite sensor underflights, the AVIRIS project has supported comparison and analysis of the radiometric calibration standards used for AVIRIS and SeaWIFS. To date, both the OCTS and SeaWIFS satellite sensors have been underflown by AVIRIS with matching spectral, spatial, geometric, radiometric, and temporal domains. The calibration and validation objective of this project is pursued for the following reasons: (1) Calibration is essential for the quantitative use of SeaWIFS and other SIMBIOS (Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies) sensor data; (2) Calibration in the laboratory of spaceborne sensors is challenging; (3) Satellite sensors are subjected aging on the ground and to trauma during launch; (4) The Earth orbit environment is significantly different than the laboratory calibration environment; (5) Through years of effort AVIRIS has been demonstrated to be well calibrated; and (6) AVIRIS can match the spectral and spatial observation characteristics near the top of the atmosphere at the time of SeaWIFS measurements.

Green, Robert O.↗
NASA NTRS2001

SIMBIOS Normalized Water-Leaving Radiance Calibration and Validation: Sensor Response, Atmospheric Corrections, Stray Light and Sun Glint

This Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) contract supports acquisition of match up radiometric and bio-optical data for validation of Sea-Viewing Wide Field-of-view Sensor (SeaWiFS) and other ocean color satellites, and evaluation of uncertainty budgets and protocols for in situ measurements of normalized water leaving radiances.

Mueller, James L.↗
NASA NTRS2001

Validation of Carbon Flux and Related Products for SIMBIOS: The CARIACO Continental Margin Time Series and the Orinoco River Plume

Between 1997 and 2000, this Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) investigation collected bio-optical measurements in the Southeastern Caribbean Sea and the tropical western Atlantic to help understand the color of coastal and continental shelf waters. Specifically, bio-optical data were collected to complement an oceanographic time series maintained within the Cariaco Basin, a site affected by seasonal coastal upwelling. Bio-optical data were also collected within the plume of the Orinoco River during seasonal extremes in discharge. This program focused on providing data to the Sea-Viewing Wide Field-of-view Sensor (SeaWiFS) and SIMBIOS Projects for validating SeaWiFS products. The data are unique in that they provide a substantial number of observations on repeated seasonal cycles for the SeaWIFS Bio-Optical Archive and Storage System (SeaBASS) bio-optical database. An important aspect of this SIMBIOS investigation was a focus on proper interpretation of ocean color remote sensing data from coastal and continental shelf environments. With this goal in mind, ocean color satellite data from a variety and locations and from different satellite sensors were examined to understand spatial and temporal variability in pigment concentrations, and also to conduct an in-depth study of current atmospheric correction and bio-optical algorithms.

Muller-Karger, Frank↗
NASA NTRS2001

Spectral Data Assimilation for Merging Satellite Ocean Color Imagery

The Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) project was initiated 'to develop a methodology and operational capability to combine data products from various ocean color missions in a manner that ensures the best possible global coverage and best exploits the complementary missions of the sensors'. While the merging of data from multiple sources has already been implemented for sea surface temperature (SST), altimetry or clouds, this is a new topic in ocean color science. Merging ocean color data has obvious advantage in terms of spatial and temporal coverage of the global ocean but data merging should also result in new, more diverse and improved data products with lower uncertainties. The merging of ocean color satellite data is generally considered at the level of the global gridded products, i.e., NASA Level-3 and, more specifically, for the merging of chlorophyll a concentration data, [Ch1]. This approach limits computational issues and deals with a unique, simple quantity, [Ch1]. However, ocean color data merging can also be conducted at the level of water-leaving radiances, LwN(lamda), using either empirical or semi-analytical algorithms. Although more challenging, this latter approach is potentially extremely powerful as it can achieve good consistency in the final data products and can take advantage of both the specificities and differences of each source of data. The demonstration of the feasibility of such approach is the main objective of our SIMBIOS work. Here, we use a semi-analytical algorithm to merge Rrs (or, equivalently LwN) data from different sources to estimate [Ch1]. The model also allows for the retrieval of other quantities such as the combined absorption of colored detrital particulate and dissolved organic matter at 443 nm, a(sub cdm)(443) and the particulate backscattering, b(sub bp)(443).

Siegel, David A.↗
NASA NTRS2001

SIMBIOS Data Product and Algorithm Validation with Emphasis on the Biogeochemical and Inherent Optical Properties

The purpose of our component of the Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) program is to address and quantify the relative accuracy of the various ocean color remote sensing products by means of product and algorithm validation. In order to accomplish these goals, we have been collaborating in an international research program in the Gulf of California designed to examine the spatial and temporal bio-optical variability in this region. In addition, we participated in various cruises of opportunity to supplement our validation data set. Our long-term objectives are to: (1) collect optical and biochemical data in oceanic and coastal regions of interest; (2) provide collected data to the Sea-Viewing Wide Field-of-view Sensor (SeaWiFS) Bio-Optical Archive and Storage System (SeaBASS) database, the SIMBIOS project office, and other interested users; (3) maintain and update instrumentation and data archiving and dissemination systems; and (4) determine spatial and temporal error fields for the biological and geophysical data products from the various ocean color missions.

Zaneveld, J. Ronald V.↗
NASA NTRS2001

Assessment of the Contribution of the Atmosphere to Uncertainties in Normalized Water-Leaving Radiance: A Combined Modeling and Data Analysis Approach

Our research for the Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) program has been focused on modeling and simulation studies as well as the development of atmospheric correction algorithms. Based on our original proposal and discussions at the SIMBIOS team meetings and workshops, the objectives of our research can be summarized as follows: (1) Use our radiative transfer model for the coupled atmosphere-ocean system to simulate the radiation field at arbitrary levels and in any desired direction in the atmosphere and ocean so as to provide a firm connection between the signal received by the satellite sensor and by a sensor looking down into the water column just above the surface and just below it; (2) Use the simulations to quantify the influence of atmospheric aerosols on the water-leaving radiance, and to quantify the error in the water-leaving radiance as a function of uncertainties in the aerosol optical properties, mass loading and vertical extent; (3) Use the model simulations in conjunction with validation measurements taken by other SIMBIOS investigators (for satellite overpasses) to assess our understanding of the radiative transfer process in the coupled atmosphere-ocean column, and to examine the extent to which the model provides a realistic prediction of simultaneously measured in situ water-leaving radiance and the radiance received by the satellite sensor; (4) Modify and improve an existing atmospheric correction algorithm, based on the work above, as needed by constructing new look-up tables that include scattering by ocean particles; and (5) Carry out approaches to developing an atmospheric correction algorithm for ocean color imagery with strongly absorbing aerosols.

Stamnes, Knut↗
NASA NTRS2001

Sources of Variability in Chlorophyll Analysis by Fluorometry and by High Performance Liquid Chromatography

The need for accurate determination of chlorophyll a (chl a) is of interest for numerous reasons. From the need for ground-truth data for remote sensing to pigment detection for laboratory experimentation, it is essential to know the accuracy of the analyses and the factors potentially contributing to variability and error. Numerous methods and instrument techniques are currently employed in the analyses of chl a. These methods range from spectrophotometric quantification, to fluorometric analysis and determination by high performance liquid chromatography. Even within the application of HPLC techniques, methods vary. Here we provide the results of a comparison among methods and provide some guidance for improving the accuracy of these analyses. These results are based on a round-robin conducted among numerous investigators, including several in the Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) and HyCODE Programs. Our purpose here is not to present the full results of the laboratory intercalibration; those results will be presented elsewhere. Rather, here we highlight some of the major factors that may contribute to the variability observed. Specifically, we aim to assess the comparability of chl a analyses performed by fluorometry and HPLC, and we identify several factors in the analyses which may contribute disproportionately to this variability.

VanHeukelem, Laurie↗
NASA NTRS2001

Validation of Surface Bio-Optical Properties in the Gulf of Maine as a Means for Improving Satellite Primary Production Estimates

One of the greatest challenges in providing sea-truth data for various ocean color sensors is climatology. This is particularly true in the Gulf of Maine since it is cloudy and foggy more than it is clear; the climatology shows on average, about one in four to five days has clear skies with clear days slightly more frequent in the late summer and early fall. Our strategy has been to use a ship of opportunity where one has choice of the sampling days. This provides much better flexibility to sample during clear periods with good satellite coverage. Our Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) contract has been to use the M/S Scotia Prince ferry as a ship of opportunity, running between Portland, Maine and Yarmouth, NS. Measurements include continuous, surface, along-track fluorescence, two independent measures of backscattering, total light scattering, absorption, beam attenuation, above-water remote sensing reflectance, calcite-dependent light scattering, temperature, and salinity. Expendable bathythermography (XBT) drops allow acquisition of vertical temperature information, useful for defining isopycnal slope, which affects primary production. These data are comparable to a previous program from early 1982, where a ship of opportunity program (SOOP) was run on the truck ferry, M/V Marine Evangeline, which ran along the same transect. These surface data were combined with satellite-derived sea surface temperature fields to examine the Maine coastal current. Unfortunately, this program stopped in 1982. The ongoing SIMBIOS results will dovetail nicely with the previous work (which also had Coastal Zone Color Scanner (CZCS) coverage) for looking at any long-term changes in the Gulf of Maine hydrography, bio-optics, and biogeochemistry.

Balch, William M.↗
NASA NTRS2002

SIMBIOS Project

The purpose of this technical report is to provide current documentation of the Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) Project activities, NASA Research Announcement (NRA) research status, satellite data processing, data product validation, and field calibration. This documentation is necessary to ensure that critical information is related to the scientific community and NASA management. This critical information includes the technical difficulties and challenges of validating and combining ocean color data from an array of independent satellite systems to form consistent and accurate global bio-optical time series products. This technical report is not meant as a substitute for scientific literature. Instead, it will provide a ready and responsive vehicle for the multitude of technical reports issued by an operational project. The SIMBIOS Science Team Principal Investigators' (PIs) original contributions to this report are in chapters four and above. The purpose of these contributions is to describe the current research status of the SIMBIOS-NRA-96 funded research. The contributions are published as submitted, with the exception of minor edits to correct obvious grammatical or clerical errors.

Fargion, Giulietta S.↗
NASA NTRS2002

The First SIMBIOS Radiometric Intercomparison (SIMRIC-1), April-September 2001

This report describes the first SIMBIOS (Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies) Radiometric Intercomparison (SIMRIC-1). The purpose of the SIMRIC-1 is to ensure a common radiometric scale of the calibration facilities that are engaged in calibrating in situ radiometers used for ocean color related research and to document the calibration procedures and protocols. SIMBIOS staff visited the seven participating laboratories for at least two days each. The SeaWiFS Transfer Radiometer SXR-II measured the calibration radiances produced in the laboratories. The measured radiances were compared with the radiances expected by the laboratories. Typically, the measured radiances were higher than the expected radiances by 0 to 2%. This level of agreement is satisfactory. Several issues were identified, where the calibration protocols need to be improved, especially the reflectance calibration of the reference plaques and the distance correction when using the irradiance standards at distances greater than the 50 cm. The responsivity of the SXR-II changed between 0.3% (channel 6) and 1.6% (channel 2) from December 2000 to December 2001. Monitoring the SXR-II with a portable light source showed a linear drift of the calibration, except for channel 1, where a 2% drop occurred in summer.

Meister, Gerhard↗
NASA NTRS2002

MPL-Net Measurements of Aerosol and Cloud Vertical Distributions at Co-Located AERONET Sites

In the early 1990s, the first small, eye-safe, and autonomous lidar system was developed, the Micropulse Lidar (MPL). The MPL acquires signal profiles of backscattered laser light from aerosols and clouds. The signals are analyzed to yield multiple layer heights, optical depths of each layer, average extinction-to-backscatter ratios for each layer, and profiles of extinction in each layer. In 2000, several MPL sites were organized into a coordinated network, called MPL-Net, by the Cloud and Aerosol Lidar Group at NASA Goddard Space Flight Center (GSFC) using funding provided by the NASA Earth Observing System. tn addition to the funding provided by NASA EOS, the NASA CERES Ground Validation Group supplied four MPL systems to the project, and the NASA TOMS group contributed their MPL for work at GSFC. The Atmospheric Radiation Measurement Program (ARM) also agreed to make their data available to the MPL-Net project for processing. In addition to the initial NASA and ARM operated sites, several other independent research groups have also expressed interest in joining the network using their own instruments. Finally, a limited amount of EOS funding was set aside to participate in various field experiments each year. The NASA Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) project also provides funds to deploy their MPL during ocean research cruises. All together, the MPL-Net project has participated in four major field experiments since 2000. Most MPL-Net sites and field experiment locations are also co-located with sunphotometers in the NASA Aerosol Robotic Network. (AERONET). Therefore, at these locations data is collected on both aerosol and cloud vertical structure as well as column optical depth and sky radiance. Real-time data products are now available from most MPL-Net sites. Our real-time products are generated at times of AERONET aerosol optical depth (AOD) measurements. The AERONET AOD is used as input to our processing routines, which calculate the aerosol layer top height and extinction profile, and our MPL calibration value. A variety of other data products are available or under development. We present an overview of the MPL-Net project and discuss data products useful to the AERONET community. Results from several sites and field experiments will be presented.

Welton, Ellsworth J.↗
NASA NTRS2002

Sources of Variability in Chlorophyll Analysis by Fluorometry and High-Performance Liquid Chromatography in a SIMBIOS Inter-Calibration Exercise

The purpose of this technical report is to provide current documentation of the Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) Project activities, NASA Research Announcement (NRA) research status, satellite data processing, data product validation, and field calibration. This documentation is necessary to ensure that critical information is related to the scientific community and NASA management. This critical information includes the technical difficulties and challenges of validating and combining ocean color data from an array of independent satellite systems to form consistent and accurate global bio-optical time series products. This technical report is not meant as a substitute for scientific literature. Instead, it will provide a ready and responsive vehicle for the multitude of technical reports issued by an operational project. This particular document focus on the variability in chlorophyll pigment measurements resulting from differences in methodologies and laboratories conducting the pigment analysis.

VanHeukelem, Laurie↗
NASA NTRS2002

The SeaWiFS Bio-Optical Archive and Storage System (SeaBASS): Current Architecture and Implementation

Satellite ocean color missions require an abundance of high-quality in situ measurements for bio-optical and atmospheric algorithm development and post-launch product validation and sensor calibration. To facilitate the assembly of a global data set, the NASA Sea-viewing Wide Field-of-view (SeaWiFS) Project developed the Seafaring Bio-optical Archive and Storage System (SeaBASS), a local repository for in situ data regularly used in their scientific analyses. The system has since been expanded to contain data sets collected by the NASA Sensor Intercalibration and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) Project, as part of NASA Research Announcements NRA-96-MTPE-04 and NRA-99-OES-99. SeaBASS is a well moderated and documented hive for bio-optical data with a simple, secure mechanism for locating and extracting data based on user inputs. Its holdings are available to the general public with the exception of the most recently collected data sets. Extensive quality assurance protocols, comprehensive data and system documentation, and the continuation of an archive and relational database management system (RDBMS) suitable for bio-optical data all contribute to the continued success of SeaBASS. This document provides an overview of the current operational SeaBASS system.

Werdell, P. Jeremy↗
NASA NTRS2003

Ocean Optics Protocols for Satellite Ocean Color Sensor Validation: Special Topics in Ocean Optics Protocols and Appendices - Volume 6

This document stipulates protocols for measuring bio-optical and radiometric data for the Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) Project activities and algorithm development. The document is organized into 6 separate volumes as Ocean Optics Protocols for Satellite Ocean Color Sensor Validation, Revision 4. Volume I: Introduction, Background and Conventions; Volume II: Instrument Specifications, Characterization and Calibration; Volume III: Radiometric Measurements and Data Analysis Methods; Volume IV: Inherent Optical Properties: Instruments, Characterization, Field Measurements and Data Analysis Protocols; Volume V: Biogeochemical and Bio-Optical Measurements and Data Analysis Methods; Volume VI: Special Topics in Ocean Optics Protocols and Appendices. The earlier version of Ocean Optics Protocols for Satellite Ocean Color Sensor Validation, Revision 3 (Mueller and Fargion 2002, Volumes 1 and 2) is entirely superseded by the six volumes of Revision 4 listed above.

Mueller, J. L.↗
NASA NTRS2003

MOBY, A Radiometric Buoy for Performance Monitoring and Vicarious Calibration of Satellite Ocean Color Sensors: Measurement and Data Analysis Protocols

The Marine Optical Buoy (MOBY) is the centerpiece of the primary ocean measurement site for calibration of satellite ocean color sensors based on independent in situ measurements. Since late 1996, the time series of normalized water-leaving radiances L(sub WN)(lambda) determined from the array of radiometric sensors attached to MOBY are the primary basis for the on-orbit calibrations of the USA Sea-viewing Wide Field-of-view Sensor (SeaWiFS), the Japanese Ocean Color and Temperature Sensor (OCTS), the French Polarization Detection Environmental Radiometer (POLDER), the German Modular Optoelectronic Scanner on the Indian Research Satellite (IRS1-MOS), and the USA Moderate Resolution Imaging Spectrometer (MODIS). The MOBY vicarious calibration L(sub WN)(lambda) reference is an essential element in the international effort to develop a global, multi-year time series of consistently calibrated ocean color products using data from a wide variety of independent satellite sensors. A longstanding goal of the SeaWiFS and MODIS (Ocean) Science Teams is to determine satellite-derived L(sub WN)(labda) with a relative combined standard uncertainty of 5 %. Other satellite ocean color projects and the Sensor Intercomparison for Marine Biology and Interdisciplinary Oceanic Studies (SIMBIOS) project have also adopted this goal, at least implicitly. Because water-leaving radiance contributes at most 10 % of the total radiance measured by a satellite sensor above the atmosphere, a 5 % uncertainty in L(sub WN)(lambda) implies a 0.5 % uncertainty in the above-atmosphere radiance measurements. This level of uncertainty can only be approached using vicarious-calibration approaches as described below. In practice, this means that the satellite radiance responsivity is adjusted to achieve the best agreement, in a least-squares sense, for the L(sub WN)(lambda) results determined using the satellite and the independent optical sensors (e.g. MOBY). The end result of this approach is to implicitly absorb unquantified, but systematic, errors in the atmospheric correction, incident solar flux, and satellite sensor calibration into a single correction factor to produce consistency with the in situ data.

Clark, Dennis K.↗
NASA NTRS2003

Ocean Optics Protocols for Satellite Ocean Color Sensor Validation: Inherent Optical Properties: Instruments, Characterizations, Field Measurements and Data Analysis Protocols - Volume 4

This document stipulates protocols for measuring bio-optical and radiometric data for the Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) Project activities and algorithm development. The document is organized into 6 separate volumes as Ocean Optics Protocols for Satellite Ocean Color Sensor Validation, Revision 4. Volume I: Introduction, Background and Conventions; Volume II: Instrument Specifications, Characterization and Calibration; Volume III: Radiometric Measurements and Data Analysis Methods; Volume IV: Inherent Optical Properties: Instruments, Characterization, Field Measurements and Data Analysis Protocols; Volume V: Biogeochemical and Bio-Optical Measurements and Data Analysis Methods; Volume VI: Special Topics in Ocean Optics Protocols and Appendices. The earlier version of Ocean Optics Protocols for Satellite Ocean Color Sensor Validation, Revision 3 (Mueller and Fargion 2002, Volumes 1 and 2) is entirely superseded by the six volumes of Revision 4 listed above.

Mueller, J. L.↗
NASA NTRS2003

Ocean Optics Protocols for Satellite Ocean Color Sensor Validation, Revision 4, Volume IV: Inherent Optical Properties: Instruments, Characterizations, Field Measurements and Data Analysis Protocols

This document stipulates protocols for measuring bio-optical and radiometric data for the Sensor Intercomparision and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) Project activities and algorithm development. The document is organized into 6 separate volumes as Ocean Optics Protocols for Satellite Ocean Color Sensor Validation, Revision 4. Volume I: Introduction, Background, and Conventions; Volume II: Instrument Specifications, Characterization and Calibration; Volume III: Radiometric Measurements and Data Analysis Methods; Volume IV: Inherent Optical Properties: Instruments, Characterization, Field Measurements and Data Analysis Protocols; Volume V: Biogeochemical and Bio-Optical Measurements and Data Analysis Methods; Volume VI: Special Topics in Ocean Optics Protocols and Appendices. The earlier version of Ocean Optics Protocols for Satellite Ocean Color Sensor Validation, Revision 3 is entirely superseded by the six volumes of Revision 4 listed above.

Mueller, J. L.↗