Rhode Island Ecological Conservation: Methods for Monitoring Rhode Island Habitats: Contributing to A Framework for Targeted Conservation and Management
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This presentation discusses a NASA Stennis Space Center project in which NASA-supported satellite and aerial data is being used to aid state and federal agencies in restoring the Mississippi barrier islands. Led by the Applied Science and Technology Project Office (ASTPO), this project will produce geospatial information products from multiple NASA-supported data sources, including Landsat, ASTER, and MODIS satellite data as well as ATLAS multispectral, CAMS multispectral, AVIRIS hyperspectral, EAARL, and other aerial data. Project objectives include the development and testing of a regional sediment transport model and the monitoring of barrier island restoration efforts through remote sensing. Barrier islands provide invaluable benefits to the State of Mississippi, including buffering the mainland from storm surge impacts, providing habitats for valuable wildlife and fisheries habitat, offering accessible recreational opportunities, and preserving natural environments for educating the public about coastal ecosystems and cultural resources. Unfortunately, these highly valued natural areas are prone to damage from hurricanes. For example, Hurricane Camille in 1969 split Ship Island into East and West Ship Island. Hurricane Georges in 1998 caused additional land loss for the two Ship Islands. More recently, Hurricanes Ivan, Katrina, Rita, Gustav, and Ike impacted the Mississippi barrier islands. In particular, Hurricane Katrina caused major damage to island vegetation and landforms, killing island forest overstories, overwashing entire islands, and causing widespread erosion. In response, multiple state and federal agencies are working to restore damaged components of these barrier islands. Much of this work is being implemented through federally funded Coastal Impact Assessment and Mississippi Coastal Improvement programs. One restoration component involves the reestablishment of the island footprints to that in 1969. Our project will employ NASA remote sensing data and products to support these federally funded efforts on multiple fronts. Landsat and ASTER data is being analyzed to assess changes in barrier island land cover over the last 35 years. ASTER, SRTM, and EAARL terrain products and other NASA airborne imagery are being applied in assessing changes in barrier island geomorphology and geospatial extent. MODIS data is being examined as a tool for sediment transport modeling by supplying geospatial data that quantifies in-water sediment concentrations. MODIS satellite data is being assessed for monitoring changes in the spatial extent of individual barrier islands. Results thus far indicate that NASA data products are useful in assessing barrier island conditions and changes. This value is enhanced with additional historical geospatial data, commercial high resolution satellite data, other non-NASA aerial imagery, and field survey data. The project s products are relevant to the Gulf of Mexico Alliance priority issues, including coastal habitat conservation, restoration and coastal community resilience. Such products will be available to state and federal agencies involved with coastal restoration. Potential end-users of these products include the National Park Service, U.S. Geological Survey, U.S. Army Corps of Engineers, Environmental Protection Agency, Mississippi Department of Environmental Quality, and Mississippi Department of Marine Resources.
Magnetic island perturbations may cause a reduction in plasma self-driven current that is needed for tokamak operation. A novel effect on tokamak self-driven current revealed by global gyrokinetic simulations is due to magnetic-island-induced 3D electric potential structures, which have the same dominant mode numbers as that of the magnetic island, whereas centered at both the inner and outer edge of the island. The non-resonant potential islands are shown to drive a current through an efficient nonlinear parallel acceleration of electrons. In large aspect ratio (large-A) tokamak devices, this new effect can result in a significant global reduction of the electron bootstrap current when the island size is sufficiently large, in addition to the local current loss across the island region due to the pressure profile flattening. It is shown that there exists a critical magnetic island width for large-A tokamaks beyond which the electron bootstrap current loss is global and increases rapidly with the island size. As such, this process may introduce a size limit for tolerable magnetic islands in large-A tokamak devices in the context of steady state operation. On the other hand, the current loss caused by magnetic islands in low-A tokamaks such as spherical tokamak (ST) NSTX/U is minor. The reduction of the axisymmetric current by magnetic islands scales with the square of island width. However, the loss of the current is mainly local to the island region, and the pace of current loss as the island size increases is substantially slower compared to large-A tokamaks. In particular, the bootstrap current reduction in STs is even smaller in the reactor-relevant high-β p regime where neoclassical tearing modes are more likely to develop.
Coastal environments such as islands have unique opportunities for renewable energy resources. This work explores the wave and offshore wind energy potential for the U.S. Pacific Ocean Minor Outlying Islands, including Baker Island, Howland Island, Jarvis Island, Johnston Atoll, Kingman Reef, Palmyra Atoll, and Wake Island. A numerical wave model based on WAVEWATCH III and SWAN (both are NWS / NOAA models) was developed, validated, and executed to generate a 32-year hindcast dataset suitable for resource characterization for each island. A complementary offshore wind resource characterization is provided for the same time period based on the European Centre for Medium-Range Weather Forecasts (ECMWF) Reanalysis v5 (ERA5). Each island has five netcdf files: 1. wave_[island]_annual_J_map.nc: the data used to generate the map of annual averaged omnidirectional wave power (J [kW/m]) 2. wave_[island]_100m_IEC: six IEC parameters at 100m isobath from 1979/01/01 to 2020/12/31, output hourly 3. wave_[island]_5km_IEC: six IEC parameters at 5km from the shoreline 1979/01/01 to 2020/12/31, output hourly 4. wind_island_100mASL_windspeed_timeseries.nc: wind speed timeseries from ERA5 at 100 m above sea level within a 60 km radius of the island (m/s) 1979/01/01 to 2010/12/31, output hourly 5. wind_island_100mASL_winddirection_timeseries.nc: wind direction timeseries from ERA5 at 100 m above sea level within a 60 km radius of the island (degrees) 1979/01/01 to 2010/12/31, output hourly
Here we report results of a systematic study on the complex oscillatory current-driven dynamics of single-layer homoepitaxial islands on crystalline substrate surfaces and the dependence of this driven dynamical behavior on important physical parameters, including island size, substrate surface orientation, and direction of externally applied electric field. The analysis is based on a nonlinear model of driven island edge morphological evolution that accounts for curvature-driven edge diffusion, edge electromigration, and edge diffusional anisotropy. Using a linear theory of island edge morphological stability, we calculate a critical island size at which the island’s equilibrium edge shape becomes unstable, which sets a lower bound for the onset of time-periodic oscillatory dynamical response. Using direct dynamical simulations, we study the edge morphological dynamics of current-driven single-layer islands at larger-than-critical size, and determine the actual island size at which the migrating islands undergo a transition from steady to time-periodic asymptotic states through a subcritical Hopf bifurcation. At the highest symmetry of diffusional anisotropy examined, on {111} surfaces of face-centered cubic crystalline substrates, we find that more complex stable oscillatory states can be reached through period-doubling bifurcation at island sizes larger than those at the Hopf points. We characterize in detail the island morphology and dynamical response at the stable time-periodic asymptotic states, determine the range of stability of these oscillatory states terminated by island breakup, and explain the morphological features of the stable oscillating islands on the basis of linear stability theory.
Barrier islands help protect the southern and southeastern U.S. shoreline from hurricanes and severe storms. They are important for coastal resource management and geologic research, especially in studies that involve changes in island areas and surface environments, and they display a dynamically changing and diverse mix of landform and vegetative cover habitats. Many Gulf Coast barrier islands have undergone dramatic decreases in areal extent, often due to hurricane and severe storm damage. For example, Louisiana's barrier islands have lost 55 percent of their surface area over the past 100 years. Aerial photography and Landsat data have been used to monitor changes in barrier island areal extent, although neither data source is optimal for making maps of detailed landform types at site-specific scales. High spatial resolution hyperspectral imagery, such as that obtained from the high spatial resolution Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) sensor, may enable improved mapping of landform types, which would benefit studies of the dynamics of barrier island environments. During the summers of 2000 and 2001, a study was conducted to assess low-altitude AVIRIS data for mapping the landform types of West Ship Island, a barrier island in Harrison County, Mississippi. This study area was selected because of the availability of low-altitude AVIRIS data acquired on July 22, 1999, and because of the area's accessibility to the investigating team. West Ship Island is one of the six barrier islands that belong to the Gulf Shores National Seashore, which is managed by the National Park Service. This island contains an impressive range of landform categories. Surface types include beach, dune, and sand flat environments. West Ship Island also harbors Fort Massachusetts, a historic fort used during the Civil War. Because it is located near Stennis Space Center, the island is frequently imaged by NASA's airborne and spaceborne sensors.
The Andaman Islands are located 120 km east of the Sunda trench in the northern quarter of the 1300 km long rupture zone of the 2004 Sumatra-Andaman Islands earthquake inferred from the distribution of aftershocks. Initial field reports indicate that several meters of uplift and up to a meter of submergence occurred on the western and eastern shorelines of the Andaman Islands, respectively, associated with the earthquake (Bilham, 2005). Satellite images also document uplift of western shoreline coral reef platforms above sea level. Body-wave (Ji, 2005; Yamamaka, 2005) and tide-gauge (Ortiz, 2005) slip inversions only resolve coseismic slip in the southern one-third to one-half of the rupture zone. The amount of coseismic slip in the Andaman Islands region is poorly constrained by these inversions. The Ice, Cloud, and land Elevation Satellite (ICESat), a part of the NASA Earth Observing System, is being used to document the spatial pattern of Andaman Islands vertical displacements in order to constrain models of slip distribution in the northern part of the rupture zone. ICESat carries the Geoscience Laser Altimeter System (GLAS) that obtains elevation measurements from 80 m diameter footprints spaced 175 m apart along profiles. For surfaces of low slope, single-footprint absolute elevation and horizontal accuracies of 10 cm and 6 m (1 sigma), respectively, referenced to the ITRF 2002 TOPEX/Poseidon ellipsoid are being obtained. Laser pulse backscatter waveforms enable separation of ground topography and overlying vegetation cover. During each 33-day observing period ICESat acquires three profiles crossing the Andaman Islands. A NNE-SSW oriented track consists of 1600 laser footprints along the western side of North, Middle, and South Andaman Islands and 240 laser footprints across the center of Great Andaman Island. Two NNW-SSE tracks consist of 440 footprints across Middle Andaman Island and 25 footprints across the west side of Sentinel Island. Cloud-free profiles were acquired in the fall of 2003 and 2004. During February-March, 2005 ICESat's precise pointing capability will be used to exactly repeat these three profiles, with a cross-track accuracy of better than 100 m, providing trench- parallel and -perpendicular observations of topographic change of the Andaman Islands that will compliment geodetic field surveys. The observed elevation changes will be compared to models of coseismic deformation associated with the mainshock and large aftershocks in the Andaman Islands region.
The effect of magnetic islands in the core region of Wendelstein 7-X (W7-X) on fast ion confinement is explored through simulations with the BEAMS3D code. A magnetic configuration where the n/m = 5/5 island chain is shifted to r/a ~ 0.7 allows the exploration of core island physics in W7-X. The control coil system on W7-X allows the tuning of the island size either increasing the island width or decreasing it. A coupling of the BEAMS3D code to the FIELDLINES code provides a versatile mechanism for incorporating magnetic islands and stochastic regions into the BEAMS3D code. Collisionless simulations suggest that the presence of core islands degrade the confinement of passing particles in the region of the island chain. Full neutral beam simulations of W7-X show a similar behavior with confinement decreasing as the island width is increased. Comparisons between a vacuum magnetic field and low beta HINT2 simulation are made showing similar fast ion behavior. Measurements of lost fast ions in W7-X confirm this trend with the control coil suppressed island configuration showing lower losses than that with no control coils applied. Simulations of fast ion wall loads are performed suggesting no drastic change in loss pattern and a slight reduction in losses with minimized islands.
We report electron temperature T e and density n e have been measured in the divertor island of Wendelstein 7-X by means of a new thermal He-beam system utilizing line-ratio spectroscopy. This system is equipped with a poloidal arrangement of five gas valves that allows to infer 2D plasma profiles T e ( R,Z ) and n e ( R,Z ) across the magnetic island forming the island divertor. A local maximum in T e ( R,Z ) was measured along the flux surfaces located between the island center and the outer separatrix. In the island center, characterized by closed field lines, a clear local minimum in T e was measured, indicating that no direct heat deposition occurs in this region and that the perpendicular heat flux from the core plasma into this domain is small. Increasing the island size leads to a reduction of the connection length in the scrape-off layer (SOL) and to a shift of the island center towards the divertor target. In this scenario, the T e ( R,Z ) are reduced in the entire island domain. Density profiles are found flat across the divertor island for both island size scenarios. These findings are supported by similar observations made with a reciprocating probe plunging through the same SOL island at the mid-plane of W7-X representing the upstream position in this 3D divertor geometry.
The physical picture of interacting magnetic islands provides a useful paradigm for certain plasma dynamics in a variety of physical environments, such as the solar corona, the heliosheath and the Earth's magnetosphere. In this work, we derive an island kinetic equation to describe the evolution of the island distribution function (in area and in flux of islands) subject to a collisional integral designed to account for the role of magnetic reconnection during island mergers. This equation is used to study the inverse transfer of magnetic energy through the coalescence of magnetic islands in two dimensions. We solve our island kinetic equation numerically for three different types of initial distribution: Dirac delta, Gaussian and power-law distributions. The time evolution of several key quantities is found to agree well with our analytical predictions: magnetic energy decays as $\tilde {t}^{-1}$ , the number of islands decreases as $\tilde {t}^{-1}$ and the averaged area of islands grows as $\tilde {t}$ , where $\tilde {t}$ is the time normalised to the characteristic reconnection time scale of islands. General properties of the distribution function and the magnetic energy spectrum are also studied. Finally, we discuss the underlying connection of our island-merger models to the (self-similar) decay of magnetohydrodynamic turbulence.
The conventional cylindrical analytical model of a magnetic island is symmetric with respect to combined reflection in the poloidal and toroidal angles, a symmetry property sometimes called "stellarator symmetry". There are cancellations in the pressure driven currents when an island is stellarator symmetric that are not there when the symmetry is broken. When the symmetry is broken, new aspects of the island physics emerge. The diamagnetic current driven by the scalar pressure is no longer ambipolar. The pressure-driven current generally has a logarithmic (integrable) singularity at the island separatrix. These effects manifest themselves when taking into account incomplete flattening of the pressure along magnetic field lines. A small magnetic island has only a small effect on the ambient pressure gradient, so that the pressure is not constant on the flux surfaces near the island. For larger islands, this behavior persists near the X-lines. The equilibrium solutions with a small island are to be compared with 3D MHD equilibrium solutions that are constrained to have simply nested flux surfaces, where the pressure-driven current goes like $1/x$ near rational surfaces, where $x$ is the distance from the rational surface. This paper presents an investigation of the pressure driven current near a small magnetic island in a cylindrical magnetic field with perturbed circular flux surfaces. The conventional analytical cylindrical model of a field with a magnetic island is augmented with a resonant component that breaks the stellarator symmetry without breaking the flux surfaces. Furthermore the effects of stellarator symmetry on magnetic islands in tokamaks are of particular interest in the context of the stabilization of edge localized modes (ELMs) by resonant magnetic perturbations (RMPs). In stellarators, the design studies for the major contemporary devices have discarded half the design parameters available for optimization at the outset by assuming stellarator symmetry.
In this work, we report a systematic study of complex pattern formation resulting from the driven dynamics of single-layer homoepitaxial islands on surfaces of face-centered-cubic (fcc) crystalline conducting substrates under the action of an externally applied electric field. The analysis is based on an experimentally validated nonlinear model of mass transport via island edge atomic diffusion, which also accounts for edge diffusional anisotropy. We analyze the morphological stability and simulate the field-driven evolution of rounded islands for an electric field oriented along the fast edge diffusion direction. For larger-than-critical island sizes on {110} and {100} fcc substrates, we show that multiple necking instabilities generate complex island patterns, including not-simply-connected void-containing islands mediated by sequences of breakup and coalescence events and distributed symmetrically with respect to the electric field direction. We analyze the dependence of the formed patterns on the original island size and on the duration of application of the external field. Starting from a single large rounded island, we characterize the evolution of the number of daughter islands and their average size and uniformity. The evolution of the average island size follows a universal power-law scaling relation, and the evolution of the total edge length of the islands in the complex pattern follows Kolmogorov-Johnson-Mehl-Avrami kinetics. Our study makes a strong case for the use of electric fields, as precisely controlled macroscopic forcing, toward surface patterning involving complex nanoscale features.
Submonolayer homoepitaxial fcc (110) systems display behavior reflecting strong anisotropy at lower temperatures, including one-dimensional decay during Ostwald ripening of rectangular islands maintaining constant width in the (001) direction. To appropriately describe this behavior, we first develop a refined continuum Burton-Cabrera-Frank formalism, which accounts for a lack of equilibration of island shape and importantly also for inhibited incorporation of adatoms at almost-faceted (1¯10) island edges through effective kinetic coefficients. This formalism is shown to describe accurately the adatom diffusion fluxes between islands and thus island evolution for a complex experimental island configuration, as confirmed by matching results from realistic atomistic simulations for this configuration. This approach also elucidates basic dependencies of flux on island geometry and temperature. Second, a further refinement is presented incorporating separate terrace and edge adatom density fields either in a continuum setting or alternatively in a spatially discrete diffusion equation setting. The second approach allows more flexibility and accuracy in accounting for edge-diffusion kinetics including corner rounding, a lack of equilibration of the edge adatom density at (1¯10) island edges, and the effect of rare kinks on (1¯10) island edges. Finally and significantly, it suggests facile two-way corner rounding at the island periphery during island decay, contrasting the previous picture.
Genomic islands are key mobile DNA elements in bacterial evolution, that can distinguish pathogenic strains from each other, or distinguish pathogenic strains from non-pathogenic strains. Their detection in genomes is a challenging problem. We present 3 main software components that attack the island detection problem on two different bases: 1) the preference of islands to insert in chromosomal tRNA or tmRNA genes (islander.pl), and 2) islands' sporadic occurrence among closely related strains. The latter principle is employed in both an algorithm (learnedPhyloblocks.pl) and a visualization method (panGenome.pl). Component islander.pl finds islands based on their preference for a particular target gene type. We annotate each tRNA and tmRNA gene, find fragments of each such gene as candidates for the distal ends of islands, and filter candidates to remove false positives. Component learnedPhyloblocks.pl uses islands found by islander.pl and other methods as a training set to find new islands. Reference genomes are aligned using mugsy, then the "phylotypes" or patterns of occurrence in the reference set are determined for each position in the target genome, and those phylotypes most enriched in the training set of islands are followed to detect yet more islands. Component panGenome.pl produces a big-data visualization of the chromosomally-ordered "pan-genome", that includes every gene of every reference genome (x-axis, pan-genome order; y-axis, reference genomes; color-coding, gene presence/absence etc.), islands appearing as dark patches.
The Long-Term Surveillance and Maintenance (LTS&M) Plan for the U.S. Department of Energy (DOE) Office of Legacy Management (LM) Amchitka Island sites describes how LM plans to conduct its mission to protect human health and the environment at the three nuclear test sites located on Amchitka Island, Alaska. Amchitka Island, near the western end of the Aleutian Islands, is approximately 1,340 miles west-southwest of Anchorage, Alaska. Amchitka is part of the Aleutian Island Unit of the Alaska Maritime National Wildlife Refuge, which is administered by the U.S. Fish and Wildlife Service (USFWS). Since World War II, Amchitka has been used by multiple U.S. government agencies for various military and research activities. From 1943 to 1950, it was used as a forward air base for the U.S. Armed Forces. During the middle 1960s and early 1970s, the U.S. Department of Defense (DOD) and the U.S. Atomic Energy Commission (AEC) used a portion of the island as a site for underground nuclear tests. During the late 1980s and early 1990s, the U.S. Navy constructed and operated a radar station on the island. Three underground nuclear tests were conducted on Amchitka Island. DOD, in conjunction with AEC, conducted the first nuclear test (named Long Shot) in 1965 to provide data that would improve the United States' capability of detecting underground nuclear explosions. The second nuclear test (Milrow) was a weapons-related test conducted by AEC in 1969 as a means to study the feasibility of detonating a much larger device. Cannikin, the third nuclear test on Amchitka, was a weapons-related test detonated on November 6, 1971. With the exception of small concentrations of tritium detected in surface water shortly after the Long Shot test, radioactive fission products from the tests remain in the subsurface at each test location As a continuation of the environmental monitoring that has taken place on Amchitka Island since before 1965, LM in the summer of 2011 collected biological and seawater samples from the marine and terrestrial environment of Amchitka Island adjacent to the three detonation sites and at a background or reference site, Adak Island, 180 miles to the east. Consistent with the goals of the Amchitka LTS&M Plan, four data quality objectives (DQOs) were developed for the 2011 sampling event.
Genomic islands are key mobile DNA elements in bacterial evolution, that can distinguish pathogenic strains from each other, or distinguish pathogenic strains from non-pathogenic strains. Their detection in genomes is a challenging problem. We present 3 main software components that attack the island detection problem on two different bases: 1) the preference of islands to insert in chromosomal tRNA or tmRNA genes (islander.pl), and 2) islands' sporadic occurrence among closely related strains. The latter principle is employed in both an algorithm (learnedPhyloblocks.pl) and a visualization method (panGenome.pl). Component islander.pl finds islands based on their preference for a particular target gene type. We annotate each tRNA and tmRNA gene, find fragments of each such gene as candidates for the distal ends of islands, and filter candidates to remove false positives. Component learnedPhyloblocks.pl uses islands found by islander.pl and other methods as a training set to find new islands. Reference genomes are aligned using mugsy, then the "phylotypes" or patterns of occurrence in the reference set are determined for each position in the target genome, and those phylotypes most enriched in the training set of islands are followed to detect yet more islands. Component panGenome.pl produces a big-data visualization of the chromosomally-ordered "pan-genome", that includes every gene of every reference genome (x-axis, pan-genome order; y-axis, reference genomes; color-coding, gene presence/absence etc.), islands appearing as dark patches.
In this work, we address the question of the influence of magnetic islands on the perpendicular transport due to steady-state ITG turbulence on the energy transport time scale. We demonstrate that turbulence can cross the separatrix and enhance the perpendicular transport across magnetic islands. As the perpendicular transport in the interior of the island sets the critical island size needed for growth of neoclassical tearing modes, this increased transport leads to a critical island size larger than that predicted from considering collisional conductivities, but smaller than that using anomalous effective conductivities. We find that on Bohm time scales, the turbulence is able to re-establish the temperature gradient across the island for islands widths w ≲ λ{sub turb}, the turbulence correlation length. The reduction in the island flattening is estimated by comparison with simulations retaining only the perpendicular temperature and no turbulence. At intermediate island widths, comparable to λ{sub turb}, turbulence is able to maintain finite temperature gradients across the island.