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Earth observational research using multistage EOS-like data

This grant is funded as a part of a program in which both research and educational impact are intended. Research work under this grant is directed at the understanding and use of future hyperspectral data such as that from imaging spectrometers. Specifically, the objectives of the work are (1) to prepare suitable means for analyzing data from sensors which have large numbers of spectral bands, (2) to advance the fundamental understanding of the manner in which soils and vegetative materials reflect high spectral resolution optical wavelength radiation, and (3) to maximize the impact of the results on the educational community. Over the life of the grant, the work has thus involved basic Earth science research and information system technique understanding and development in a mutually supportive way, however, more recently it has become necessary to focus the work primarily on areas (1) and (3). During the last year, the level of effort on this grant has been reduced to half its previous value. We have also been advised that this grant will end with the current year, thus this will be the penultimate semiannual progress summary.

Johannsen, C. J.

Earth observational research using multistage EOS-like data

This grant was funded as a part of a program in which both research and educational impact were intended. Research work under this grant is directed at the understanding and use of future hyperspectral data such as that from imaging spectrometers. Specifically, the objectives of the work were: to prepare suitable means for analyzing data from sensors which have large numbers of spectral bands, to advance the fundamental understanding of the manner in which soils and vegetative materials reflect high spectral resolution optical wavelength radiation, and to maximize the impact of the results on the educational community. Over the life of the grant, the work has thus involved basic earth science research and information system technique understanding and development in a mutually supportive way. However, during the later years it became necessary to focus the work primarily on the first and last areas, due to a steadily decreasing level of effort.

Johannsen, C. J.

Low Altitude AVIRIS Data for Mapping Land Cover in Yellowstone National Park: Use of Isodata Clustering Techniques

Yellowstone National Park (YNP) contains a diversity of land cover. YNP managers need site-specific land cover maps, which may be produced more effectively using high-resolution hyperspectral imagery. ISODATA clustering techniques have aided operational multispectral image classification and may benefit certain hyperspectral data applications if optimally applied. In response, a study was performed for an area in northeast YNP using 11 select bands of low-altitude AVIRIS data calibrated to ground reflectance. These data were subjected to ISODATA clustering and Maximum Likelihood Classification techniques to produce a moderately detailed land cover map. The latter has good apparent overall agreement with field surveys and aerial photo interpretation.

Spruce, Joe

Advanced Multimission Operations System (ATMO)

The HiiHat toolbox developed for CAT/ENVI provides principal investigators direct, immediate, flexible, and seamless interaction with their instruments and data from any location. Offering segmentation and neutral region division, it facilitates the discovery of key endmembers and regions of interest larger than a single pixel. Crucial to the analysis of hyperspectral data from Mars or Earth is the removal of unwanted atmospheric signatures. For Mars and the Compact Reconnaissance Imaging Spectrometer for Mars (CRISM), residual atmospheric CO2 absorption is both directly problematic and indicative of processing errors with implications to the scientific utility of any particular image region. Estimating this residual error becomes key both in selecting regions of low distortion, and also to select mitigating methods, such as neutral region division. This innovation, the ATMO estimator, provides a simple, 0-1 normalized scalar that estimates this distortion (see figure). The metric is defined as the coefficient of determination of a quadratic fit in the region of distorting atmospheric absorption (approx 2 micron). This mimics the behavior of existing CRISM team mineralogical indices to estimate the presence of known, interesting mineral signatures. This facilitates the ATMO metric's assimilation into existing planetary geology workflows.

Mandrake, Lucas

Ultraviolet-Infrared Mapping Interferometic Spectrometer

Prism and grating spectrometers have been the defacto devices for spectral mapping and imaging (hereafter referred to as hyperspectra). We have developed a new, hybrid instrument with many superior capabilities, the Digital Array Scanned Interferometer, DASI. The DASI performs the hyperspectral data acquisition in the same way as a grating or prism spectrograph, but retains the substantial advantages of the two-beam (Michelson) interferometer with additional capabilities not possessed by either of the other devices. The DASI is capable of hyperspectral studies in virtually any space or surface environment at any wavelength from below 50 nm to beyond 12 microns with available array detectors. By our efforts, we have defined simple, low cost, no-moving parts DASI's capable of carrying out hyperspectral science measurements for solar system exploration missions, e.g. for martian, asteroid, lunar, or cometary surveys. DASI capabilities can be utilized to minimize cost, weight, power, pointing, and other physical requirements while maximizing the science data return for spectral mapping missions. Our success in the development of DASI's has become and continues to be an important influence on the efforts of the best research groups developing remote sensing instruments for space and other applications.

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Pace OCI Crosstalk Characterization Based on Pre-Launch Testing

Scheduled to launch in 2024, the Ocean Color Instrument (OCI) onboard the Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission will collect hyperspectral data from 315 nm – 895 nm via two grating spectrometers (in both the blue and red spectral regions) and 9 multi-spectral bands in the short-wave infrared (940 nm – 2260 nm). The increased spectral resolution and radiometric accuracy is expected to improve upon data collected by heritage sensors such as SeaWiFs, MODIS, and VIIRS, allowing new applications in ocean color, aerosol, and cloud science. During ground testing, higher than expected spatial-spectral crosstalk was measured for the hyperspectral bands in the blue spectrograph. Using a monochromatic-collimated light source, light from a single science pixel (1km x 1km) was found to produce crosstalk signals over 31 pixels in the cross-track direction. This spatial augmentation is caused by the spectral crosstalk’s asynchronous spatial movement during Time Delay Integration (TDI). To fully characterized the magnitude and spectral dependency from this, a crosstalk model was developed by synthesizing data collected from monochromatic-collimated light and monochromatic light that filled the OCI optical aperture. The model was validated by showing good agreement between predicted values and other relevant test data collected using both monochromatic and white light sources.

PACE

Hyperspectral segmentation of plants in fabricated ecosystems

Hyperspectral imaging provides a powerful tool for analyzing above-ground plant characteristics in fabricated ecosystems, offering rich spectral information across diverse wavelengths. This study presents an efficient workflow for hyperspectral data segmentation and subsequent data analytics, minimizing the need for user annotation through the use of ensembles of sparse mixed scale convolution neural networks. The segmentation process leverages the diversity of ensembles to achieve high accuracy with minimal labeled data, reducing labor-intensive annotation efforts. To further enhance robustness, we incorporate image alignment techniques to address spatial variability in the dataset. Downstream analysis focuses on using the segmented data for processing spectral data, enabling monitoring of plant health. This approach provides a scalable solution for spectral segmentation, and facilitates actionable insights into plant conditions in complex, controlled environments. Our results demonstrate the utility of combining advanced machine learning techniques with hyperspectral analytics for high-throughput plant monitoring.

Zwart, Petrus H.

Exploring Mission Design for Imaging Spectroscopy Retrievals for Land and Aquatic Ecosystems

The retrieval algorithms used for optical remote sensing satellite data to estimate Earth's geophysical properties have specific requirements for spatial resolution, temporal revisit, spectral range and resolution, and instrument signal-to-noise ratio (SNR) performance to meet biogeoscience objectives. Studies to estimate surface properties from hyperspectral data use a range of algorithms sensitive to various sources of spectroscopic uncertainty, which are in turn influenced by mission architecture choices. Retrieval algorithms vary across scientific fields and may be more or less sensitive to mission architecture choices that affect spectral, spatial, or temporal resolutions and spectrometer SNR. We used representative remote sensing algorithms across terrestrial and aquatic study domains to inform aspects of mission design that are most important for impacting accuracy in each scientific area. We simulated the propagation of uncertainties in the retrieval process including the effects of different instrument configuration choices. We found that retrieval accuracy and information content degrade consistently at >10 nm spectral resolution, >30 m spatial resolution, and >8-day revisit. In these studies, the noise reduction associated with lower spatial resolution improved accuracy vis à vis high spatial resolution measurements. The interplay between spatial resolution, temporal revisit, and SNR can be quantitatively assessed for imaging spectroscopy missions and used to identify key components of algorithm performance and mission observing criteria.

A. M. Raiho

Oleoresin, Chemistry and Spectral Reflectance in "Stressed" Lodgepole and White Bark Pine, Mammoth Mountain, California

Development of methods to identify the physical and chemical character of materials on the earth's surface is one of the foci of hyperspectral remote sensing activities. Enhancing the ability to elucidate changes in foliar chemistry that relate to the health of a plant is a benefit to plant physiologists, foresters, and plant ecologists, as well as geologist and environmental scientists. Vegetation covers the landscape throughout the temperate and tropical regions of the earth. The existence of vegetation in these areas presents special problems to remote sensing systems since geologic bedrock and alteration zones are masked. At times, however, alterations in the soil/sediment geochemical environment result in foliar chemical changes that are detectable via remote sensing. Examples include monitoring of chlorophyll reflectance/fluorescence and equivalent water thickness indices as indicators of drought-induced plant stress. Another processing and interpretation approach used with hyperspectral data has been principal components analysis (PCA). Rowan et al. used PCA to identify absorption feature patterns obtained from vegetated areas with discrete bedrock geology or mineralization as the substrate. Many researchers highlight the need to advance our ability for hyperspectral imaging in vegetated areas as a near-term priority.

Hickey, James C.

Coral Reef Remote Sensing using Simulated VIIRS and LDCM Imagery

The Rapid Prototyping Capability (RPC) node at NASA Stennis Space Center, MS, was used to simulate NASA next-generation sensor imagery over well-known coral reef areas: Looe Key, FL, and Kaneohe Bay, HI. The objective was to assess the degree to which next-generation sensor systems the Visible/Infrared Imager/Radiometer Suite (VIIRS) and the Landsat Data Continuity Mission (LDCM) might provide key input to the National Oceanographic and Atmospheric Administration (NOAA) Integrated Coral Observing Network (ICON)/Coral Reef Early Warning System (CREWS) Decision Support Tool (DST). The DST data layers produced from the simulated imagery concerned water quality and benthic classification map layers. The water optical parameters of interest were chlorophyll (Chl) and the absorption coefficient (a). The input imagery used by the RPC for simulation included spaceborne (Hyperion) and airborne (AVIRIS) hyperspectral data. Specific field data to complement and aid in validation of the overflight data was used when available. The results of the experiment show that the next-generation sensor systems are capable of providing valuable data layer resources to NOAA's ICON/CREWS DST.

Estep, Leland

Coral Reef Remote Sensing Using Simulated VIIRS and LDCM Imagery

The Rapid Prototyping Capability (RPC) node at NASA Stennis Space Center, MS, was used to simulate NASA next-generation sensor imagery over well-known coral reef areas: Looe Key, FL, and Kaneohe Bay, HI. The objective was to assess the degree to which next-generation sensor systems-the Visible/Infrared Imager/Radiometer Suite (VIIRS) and the Landsat Data Continuity Mission (LDCM)- might provide key input to the National Oceanographic and Atmospheric Administration (NOAA) Integrated Coral Observing Network (ICON)/Coral Reef Early Warning System (CREWS) Decision Support Tool (DST). The DST data layers produced from the simulated imagery concerned water quality and benthic classification map layers. The water optical parameters of interest were chlorophyll (Chl) and the absorption coefficient (a). The input imagery used by the RPC for simulation included spaceborne (Hyperion) and airborne (AVIRIS) hyperspectral data. Specific field data to complement and aid in validation of the overflight data was used when available. The results of the experiment show that the next-generation sensor systems are capable of providing valuable data layer resources to NOAA s ICON/CREWS DST.

Estep, Leland

A Computer Learning Center for Environmental Sciences

In the fall of 1998, MacMillan Hall opened at Brown University to students. In MacMillan Hall was the new Computer Learning Center, since named the EarthLab which was outfitted with high-end workstations and peripherals primarily focused on the use of remotely sensed and other spatial data in the environmental sciences. The NASA grant we received as part of the "Centers of Excellence in Applications of Remote Sensing to Regional and Global Integrated Environmental Assessments" was the primary source of funds to outfit this learning and research center. Since opening, we have expanded the range of learning and research opportunities and integrated a cross-campus network of disciplines who have come together to learn and use spatial data of all kinds. The EarthLab also forms a core of undergraduate, graduate, and faculty research on environmental problems that draw upon the unique perspective of remotely sensed data. Over the last two years, the Earthlab has been a center for research on the environmental impact of water resource use in and regions, impact of the green revolution on forest cover in India, the design of forest preserves in Vietnam, and detailed assessments of the utility of thermal and hyperspectral data for water quality analysis. It has also been used extensively for local environmental activities, in particular studies on the impact of lead on the health of urban children in Rhode Island. Finally, the EarthLab has also served as a key educational and analysis center for activities related to the Brown University Affiliated Research Center that is devoted to transferring university research to the private sector.

Mustard, John F.

PlantCV v4: Image analysis software for high‐throughput plant phenotyping

PlantCV is an open-source Python project aimed at developing tools to address a range of image-based, plant phenotyping questions. PlantCV has been used for more than 10 years to automate trait collection from image data, and the newest release, PlantCV version 4, continues to lower the barrier to entry for users without substantial coding experience through extensive example use-case tutorials and simplified installation. In addition to usability, we document added functionality since the release of PlantCV v2, including support for more image types such as fluorescence, thermal, and hyperspectral data. Finally, we describe the development of a new subpackage focused on morphological trait measurements like leaf angle, and demonstrate its utility as compared to more manual methods of data collection.

Schuhl, Haley [Donald Danforth Plant Science Cente

NASA Tech Briefs, September 2013

Topics include: ISS Ammonia Leak Detection Through X-Ray Fluorescence; A System for Measuring the Sway of the Vehicle Assembly Building; Fast, High-Precision Readout Circuit for Detector Arrays; Victim Simulator for Victim Detection Radar; Hydrometeor Size Distribution Measurements by Imaging the Attenuation of a Laser Spot; Quasi-Linear Circuit; High-Speed, High-Resolution Time-to-Digital Conversion; Li-Ion Battery and Supercapacitor Hybrid Design for Long Extravehicular Activities; Ultrasonic Low-Friction Containment Plate for Thermal and Ultrasonic Stir Weld Processes; High-Powered, Ultrasonically Assisted Thermal Stir Welding; Next-Generation MKIII Lightweight HUT/Hatch Assembly; Centrifugal Sieve for Gravity-Level-Independent Size; Segregation of Granular Materials; Ion Exchange Technology Development in Support of the Urine Processor Assembly; Nickel-Graphite Composite Compliant Interface and/or Hot Shoe Material; UltraSail CubeSat Solar Sail Flight Experiment; Mechanism for Deploying a Long, Thin-Film Antenna From a Rover; Counterflow Regolith Heat Exchanger; Acquisition and Retaining Granular Samples via a Rotating Coring Bit; Very-Low-Cost, Rugged Vacuum System; Medicine Delivery Device With Integrated Sterilization and Detection; FRET-Aptamer Assays for Bone Marker Assessment, C-Telopeptide, Creatinine, and Vitamin D; Multimode Directional Coupler for Utilization of Harmonic Frequencies from TWTAs; Dual-Polarization, Multi-Frequency Antenna Array for use with Hurricane Imaging Radiometer; Complementary Barrier Infrared Detector (CBIRD) Contact Methods; Autonomous Control of Space Nuclear Reactors; High-Power, High-Speed Electro-Optic Pockels Cell Modulator; Covariance Analysis Tool (G-CAT) for Computing Ascent, Descent, and Landing Errors; Enigma Version 12; Micrometeoroid and Orbital Debris (MMOD) Shield Ballistic Limit Analysis Program; Spitzer Telemetry Processing System; Planetary Protection Bioburden Analysis Program; Wing Leading Edge RCC Rapid Response Damage Prediction Tool (IMPACT2); ISSM: Ice Sheet System Model; Automated Loads Analysis System (ATLAS); Integrated Main Propulsion System Performance Reconstruction Process/Models. Phoenix Telemetry Processor; Contact Graph Routing Enhancements Developed in ION for DTN; GFEChutes Lo-Fi; Advanced Strategic and Tactical Relay Request Management for the Mars Relay Operations Service; Software for Generating Troposphere Corrections for InSAR Using GPS and Weather Model Data; Ionospheric Specifications for SAR Interferometry (ISSI); Implementation of a Wavefront-Sensing Algorithm; Sally Ride EarthKAM - Automated Image Geo-Referencing Using Google Earth Web Plug-In; Trade Space Specification Tool (TSST) for Rapid Mission Architecture (Version 1.2); Acoustic Emission Analysis Applet (AEAA) Software; Memory-Efficient Onboard Rock Segmentation; Advanced Multimission Operations System (ATMO); Robot Sequencing and Visualization Program (RSVP); Automating Hyperspectral Data for Rapid Response in Volcanic Emergencies; Raster-Based Approach to Solar Pressure Modeling; Space Images for NASA JPL Android Version; Kinect Engineering with Learning (KEWL); Spacecraft 3D Augmented Reality Mobile App; MPST Software: grl_pef_check; Real-Time Multimission Event Notification System for Mars Relay; SIM_EXPLORE: Software for Directed Exploration of Complex Systems; Mobile Timekeeping Application Built on Reverse-Engineered JPL Infrastructure; Advanced Query and Data Mining Capabilities for MaROS; Jettison Engineering Trajectory Tool; MPST Software: grl_suppdoc; PredGuid+A: Orion Entry Guidance Modified for Aerocapture; Planning Coverage Campaigns for Mission Design and Analysis: CLASP for DESDynl; and Space Place Prime.

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NASA Tech Briefs, January 2014

Topics include: Multi-Source Autonomous Response for Targeting and Monitoring of Volcanic Activity; Software Suite to Support In-Flight Characterization of Remote Sensing Systems; Visual Image Sensor Organ Replacement; Ultra-Wideband, Dual-Polarized, Beam-Steering P-Band Array Antenna; Centering a DDR Strobe in the Middle of a Data Packet; Using a Commercial Ethernet PHY Device in a Radiation Environment; Submerged AUV Charging Station; Habitat Demonstration Unit (HDU) Vertical Cylinder Habitat; Origami-Inspired Folding of Thick, Rigid Panels; A Novel Protocol for Decoating and Permeabilizing Bacterial Spores for Epifluorescent Microscopy; Method and Apparatus for Automated Isolation of Nucleic Acids from Small Cell Samples; Enabling Microliquid Chromatography by Microbead Packing of Microchannels; On-Command Force and Torque Impeding Devices (OC-FTID) Using ERF; Deployable Fresnel Rings; Transition-Edge Hot-Electron Microbolometers for Millimeter and Submillimeter Astrophysics; Spacecraft Trajectory Analysis and Mission Planning Simulation (STAMPS) Software; Cross Support Transfer Service (CSTS) Framework Library; Arbitrary Shape Deformation in CFD Design; Range Safety Flight Elevation Limit Calculation Software; Frequency-Modulated, Continuous-Wave Laser Ranging Using Photon-Counting Detectors; Calculation of Operations Efficiency Factors for Mars Surface Missions; GPU Lossless Hyperspectral Data Compression System; Robust, Optimal Subsonic Airfoil Shapes; Protograph-Based Raptor-Like Codes; Fuzzy Neuron: Method and Hardware Realization; Kalman Filter Input Processor for Boresight Calibration; Organizing Compression of Hyperspectral Imagery to Allow Efficient Parallel Decompression; and Temperature Dependences of Mechanisms Responsible for the Water-Vapor Continuum Absorption.

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Impact of Spectral Resolution on Quantifying Cyanobacteria in Lakes and Reservoirs: A Machine-Learning Assessment

Cyanobacterial harmful algal blooms are an increasing threat to coastal and inland waters. These blooms can be detected using optical radiometers due to the presence of phycocyanin (PC) pigments. The spectral resolution of best-available multispectral sensors limits their ability to diagnostically detect PC in the presence of other photosynthetic pigments. To assess the role of spectral resolution in the determination of PC, a large ( N=905 ) database of colocated in situ radiometric spectra and PC are employed. We first examine the performance of selected widely used machine-learning (ML) models against that of benchmark algorithms for hyperspectral remote sensing reflectance ( R_(rs) ) spectra resampled to the spectral configuration of the Hyperspectral Imager for the Coastal Ocean (HICO) with a full-width at half-maximum (FWHM) of < 6 nm. Results show that the multilayer perceptron (MLP) neural network applied to HICO spectral configurations (median errors < 65%) outperforms other ML models. This model is subsequently applied to R_(rs) spectra resampled to the band configuration of existing satellite instruments and of the one proposed for the next Landsat sensor. These results confirm that employing MLP models to estimate PC from hyperspectral data delivers tangible improvements compared with retrievals from multispectral data and benchmark algorithms (with median errors between ∼73 % and 126%) and shows promise for developing a globally applicable cyanobacteria measurement approach.

hyperspectral

Remotely-Sensed Geology from Lander-Based to Orbital Perspectives: Results for FIDO Rover Field Tests

Tests of the FIDO (Field Integration Design and Operations) rover and Athena-like operational scenarios were conducted May 7-16, 2000. A group located at the Jet Propulsion Lab, Pasadena, CA, formed the Core Operations Team (COT) that designed experiments and command sequences while another team tracked, maintained, and secured the rover in the field. The COT had no knowledge of the specific field location, thus the tests were done "blind." In addition to FIDO rover instrumentation, the COT had access to LANDSAT 7, TIMS, and AVIRIS regional coverage and color descent images. Using data from the FIDO instruments, primarily a color microscopic imager (CMI), infrared point spectrometer (IPS; 1.5-2.4 microns), and a three-color stereo panoramic camera (Pancam), the COT correlated lithologic features (mineralogy, rock types) from the simulated landing site to a regional scale. The May test results provide an example of how to relate site geology from landed rover investigations to the regional geology using remote sensing. The capability to relate mineralogic signatures using the point IR spectrometer to remotely sensed, multispectral or hyperspectral data proved to be key to integration of the in-situ and remote data. This exercise demonstrated the potential synergy between lander-based and orbital data, and highlighted the need to investigate a landing site in detail and at multiple scales.

Jolliff, B.

Candidate Landing Site for the Mars Science Laboratory: Vernal Crater, S.W. ARabia Terra

In the fall of 2009, the Mars Science Laboratory (MSL) will be launched to Mars. The purpose of this mission is to assess biologic potential and geology and to investigate planetary processes of relevance to past habitability. MSL will be able to provide visual, chemical, radiation, and environmental data with its suite of instruments [1]. In order to be selected for the MSL landing site, certain engineering requirements must be met [1] and the area should contain geologic features suggestive of past habitability, so that the overriding science goal of the mission will be attained. There are a total of 33 proposed landing sites as of the first MSL Landing Site Workshop held in Pasadena, CA from May 31st to June 2nd, 2006 [1]. There will be an opportunity to gather high resolution visual and hyperspectral data on all proposed landing sites from the now-orbiting Mars Reconnaissance Orbiter (MRO) which entered martian orbit and began its main science phase in November of 2006 [2]. The data being gathered are from: the high resolution imaging science experiment (HiRISE), the context (CTX) camera and the compact reconnaissance imaging spectrometer (CRISM) onboard the spacecraft. The footprints of these instruments are centered on a single point, and each proposer must submit these coordinates, along with the coordinates of the proposed landing ellipse. Data from these instruments, along with new MOC images and THEMIS mosaics, will be used to enhance our understanding of the geologic and engineering parameters of each site.

Paris, K. N.