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At least 109 records · Page 6

Deriving Plasma Densities and Elemental Abundances from SERTS Differential Emission Measure Analysis

We use high-resolution spectral emission line data obtained by the SERTS instrument during three rocket flights to demonstrate a new approach for constraining electron densities of solar active region plasma.We apply differential emission measure (DEM) forward-fitting techniques to characterize the multithermal solar plasma producing the observed EUV spectra, with constraints on the high-temperature plasma from the Yohkoh Soft X-ray Telescope. In this iterative process, we compare line intensities predicted by an input source distribution to observed line intensities for multiple iron ion species, and search a broad range of densities to optimize chi-square simultaneously for the many available density-sensitive lines. This produces a density weighted by the DEM, which appears to be useful for characterizing the bulk of the emitting plasma over a significant range of temperature. This "DEM-weighted density" technique is complementary to the use of density-sensitive line ratios and less affected by uncertainties in atomic data and ionization fraction for any specific line. Once the DEM shape and the DEM-weighted density have been established from the iron lines, the relative elemental abundances can be determined for other lines in the spectrum. We have also identified spectral lines in the SERTS wavelength range that may be problematic

corona↗

Dispersive corrections in elastic electron-nucleus scattering: an investigation in the intermediate energy regime and their impact on the nuclear matter

Measurements of elastic electron scattering data within the past decade have highlighted two-photon exchange contributions as a necessary ingredient in theoretical calculations to precisely evaluate hydrogen elastic scattering cross sections. This correction can modify the cross section at the few percent level. In contrast, dispersive effects can cause significantly larger changes from the Born approximation. The purpose of this experiment is to extract the carbon-12 elastic cross section around the first diffraction minimum, where the Born term contributions to the cross section are small to maximize the sensitivity to dispersive effects. The analysis uses the LEDEX data from the high resolution Jefferson Lab Hall A spectrometers to extract the cross sections near the first diffraction minimum of 12 C at beam energies of 362 MeV and 685 MeV. The results are in very good agreement with previous world data, although with less precision. The average deviation from a static nuclear charge distribution expected from linear and quadratic fits indicate a 30.6% contribution of dispersive effects to the cross section at 1 GeV. The magnitude of the dispersive effects near the first diffraction minimum of 12 C has been confirmed to be large with a strong energy dependence and could account for a large fraction of the magnitude for the observed quenching of the longitudinal nuclear response. These effects could also be important for nuclei radii extracted from parity-violating asymmetries measured near a diffraction minimum.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Resolution and noise properties of the Goddard High-Resolution Spectrograph

The Goddard High-Resolution Spectrograph (GHRS) observation characteristics and data analysis procedures, including deconvolution, are discussed. Particular attention is given to the detection of weak absorption lines in low-signal-to-noise observations. It is found that observations with the GHRS large aperture provide greater sensitivity for the detection of weak, isolated spectral features than does the small aperture for equal observing times. The noise characteristics are well represented by a Poisson distribution at low signal-to-noise characteristics. It is proposed that GHRS observations should be routinely structured with the use of comb-addition, quarter-substepping, FP-SPLITS, and multiple repeats to enable the proper discrimination against noise events capable of mimicking spectral features.

Gilliland, Ronald L.↗

Telescope Scientist on the Advanced X-Ray Astrophysics Observatory

The most important activity during this reporting period was the calibration of the AXAF High Resolution Mirror Assembly (HRMA) and the analysis of the copious data which were obtained during that project. The calibration was highly successful, and will result in the AXAF being by far the best calibrated X-ray observatory ever flown, and more accurate results by all of its users. This period also included participation in the spacecraft alignment and assembly activities and final flight readiness reviews. The planning of the first year of Telescope Scientist AXAF observations also was accomplished. The Telescope Scientist team also served as a technical resource for various problems which were encountered during this period. Many of these contributions have been documented in memoranda sent to the project.

VanSpeybroeck, Leon↗

Ocean Wave Studies with Applications to Ocean Modeling and Improvement of Satellite Altimeter Measurements

Combining analysis of satellite data (altimeter, scatterometer, high-resolution visible and infrared images, etc.) with mathematical modeling of non-linear wave processes, we investigate various ocean wave fields (on scales from capillary to planetary), their role in ocean dynamics and turbulent transport (of heat and biogeochemical quantities), and their effects on satellite altimeter measuring accuracy. In 1998 my attention was focused on long internal gravity waves (10 to 1000 km), known also as baroclinic inertia-gravity (BIG) waves. We found these waves to be a major factor of altimeter measurements "noise," resulting in a greater uncertainty [up to 10 cm in terms of sea surface height (SSH) amplitude] in the measured SSH signal than that caused by the sea state bias variations (up to 5 cm or so). This effect still remains largely overlooked by the satellite altimeter community. Our studies of BIG waves address not only their influence on altimeter measurements but also their role in global ocean dynamics and in transport and turbulent diffusion of biogeochemical quantities. In particular, in collaboration with Prof Peter Weichman, Caltech, we developed a theory of turbulent diffusion caused by wave motions of most general nature. Applied to the problem of horizontal turbulent diffusion in the ocean, the theory yielded the effective diffusion coefficient as a function of BIG wave parameters obtainable from satellite altimeter data. This effort, begun in 1997, has been successfully completed in 1998. We also developed a theory that relates spatial fluctuations of scalar fields (such as sea surface temperature, chlorophyll concentration, drifting ice concentration, etc.) to statistical characteristics of BIG waves obtainable from altimeter measurements. A manuscript is in the final stages of preparation. In order to verify the theoretical predictions and apply them to observations, we are now analyzing Sea-viewing Wide Field of view Sensor (SeaWiFS) and Field of view Sensor (SeaWiFS) and Advanced Very High-Resolution Radiometer (AVHRR) data on sea surface temperature (SST) and chlorophyll concentration jointly with TOPEX/POSEIDON data on SSH variations.

Glazman, Roman E.↗

Delta L: An Apparatus for Measuring Macromolecule Crystal Growth Rates in Microgravity

Strongly diffracting high quality macromolecule crystals of suitable volume are keenly sought for X-ray diffraction analysis so that high-resolution molecular structure data can be obtained. Such data is of tremendous value to medical research, agriculture and commercial biotechnology. In previous studies by many investigators microgravity has been reported in some instances to improve biological macromolecule X-ray crystal quality while little or no improvement was observed in other cases. A better understanding of processes effecting crystal quality improvement in microgravity will therefore be of great benefit in optimizing crystallization success in microgravity. In ground based research with the protein lysozyme we have previously shown that a population of crystals grown under the same solution conditions, exhibit a variation in X-ray diffraction properties (Judge et al., 1999). We have also observed that under the same solution conditions, individual crystals will grow at slightly different growth rates. This phenomenon is called growth rate dispersion. For small molecule materials growth rate dispersion has been directly related to crystal quality (Cunningham et al., 1991; Ristic et al., 1991). We therefore postulate that microgravity may act to improve crystal quality by reducing growth rate dispersion. If this is the case then as different, Materials exhibit different degrees of growth rate dispersion on the ground then growth rate dispersion could be used to screen which materials may benefit the most from microgravity crystallization. In order to assess this theory the Delta L hardware is being developed so that macromolecule crystal growth rates can be measured in microgravity. Crystal growth rate is defined as the change or delta in crystal size (defined as a characteristic length, L) over time; hence the name of the hardware. Delta L will consist of an optics, a fluids, and a data acquisition sub-assemblies. The optics assembly will consist of a video microscope camera mounted on three axis computer controlled translation stages. The fluids assembly consists of macromolecule and precipitant reservoirs, a temperature controlled growth cell and waste container, The data acquisition is achieved by using a frame-gabber, with images being stored on a hard drive. In operation, macromolecule and precipitant solution will be injected into the temperature controlled growth cell. As macromolecule crystals grow, the video microscope camera controlled by the translation stages, will be used to locate and record images of individual crystals, returning to the same crystals at specific time intervals. The images will be stored on the hard drive and used to calculate the crystal growth rate. To prevent vibrations interfering in the crystal growth rate measurements (Snell et al., 1997) Delta L will be used in connection with the Glovebox Integrated Microgravity Isolation Technology (g-LIMIT) inside the Microgravity Science Glovebox (MSG), onboard the International Space Station (ISS).

Judge, Russell A.↗

Voyager 2 Constraints on Plasmoid‐based Transport at Uranus

A magnetosphere controls a planet's evolution by suppressing or enhancing atmospheric loss to space. In situ measurements of Uranus' magnetosphere from the Voyager 2 flyby in 1986 provide the only direct evidence of magnetospheric transport processes responsible for this atmospheric escape at Uranus. Analysis of high‐resolution Voyager 2 magnetic field data in Uranus' magnetotail reveals the presence of a loop‐like plasmoid filled with planetary plasma traveling away from the planet. This first plasmoid observation in an Ice Giant magnetosphere elucidates that (1) both internal and external forces play a role in Uranus' magnetospheric dynamics, (2) magnetic reconnection contributes to the circulation of plasma and magnetic flux at Uranus, and (3) plasmoids may be a dominant transport mechanism for mass loss through Uranus' magnetotail.

DiBraccio, Gina A.↗

Voyager 2 Constraints on Plasmoid-Based Transport at Uranus

A magnetosphere controls a planet's evolution by suppressing or enhancing atmospheric loss to space. In situ measurements of Uranus' magnetosphere from the Voyager 2 flyby in 1986 provide the only direct evidence of magnetospheric transport processes responsible for this atmospheric escape at Uranus. Analysis of high‐resolution Voyager 2 magnetic field data in Uranus' magnetotail reveals the presence of a loop‐like plasmoid filled with planetary plasma traveling away from the planet. This first plasmoid observation in an Ice Giant magnetosphere elucidates that (1) both internal and external forces play a role in Uranus' magnetospheric dynamics, (2) magnetic reconnection contributes to the circulation of plasma and magnetic flux at Uranus, and (3) plasmoids may be a dominant transport mechanism for mass loss through Uranus' magnetotail.

Gina A Dibraccio↗

Analysis of Vegetation Within A Semi-Arid Urban Environment Using High Spatial Resolution Airborne Thermal Infrared Remote Sensing Data

High spatial resolution (5 m) remote sensing data obtained using the airborne Thermal Infrared Multispectral Scanner (TIMS) sensor for daytime and nighttime have been used to measure thermal energy responses for 2 broad classes and 10 subclasses of vegetation typical of the Salt Lake City, Utah urban landscape. Polygons representing discrete areas corresponding to the 10 subclasses of vegetation types have been delineated from the remote sensing data and are used for analysis of upwelling thermal energy for day, night, and the change in response between day and night or flux, as measured by the TIMS. These data have been used to produce three-dimensional graphs of energy responses in W/ sq m for day, night, and flux, for each urban vegetation land cover as measured by each of the six channels of the TIMS sensor. Analysis of these graphs provides a unique perspective for both viewing and understanding thermal responses, as recorded by the TIMS, for selected vegetation types common to Salt Lake City. A descriptive interpretation is given for each of the day, night, and flux graphs along with an analysis of what the patterns mean in reference to the thermal properties of the vegetation types surveyed in this study. From analyses of these graphs, it is apparent that thermal responses for vegetation can be highly varied as a function of the biophysical properties of the vegetation itself, as well as other factors. Moreover, it is also seen where vegetation, particularly trees, has a significant influence on damping or mitigating the amount of thermal radiation upwelling into the atmosphere across the Salt Lake City urban landscape. Published by Elsevier Science Ltd.

Quattrochi, Dale A.↗

Advanced X-ray Astrophysics Facility (AXAF): Calibration Overview

The Advanced X-ray Astrophysics Facility (AXAF), the x-ray component of NASA's Great Observatories, will launch in 1999. As integration and testing of the flight system are concluding, analysis of the ground calibration data continues. This analysis verifies AXAF's unique capabilities for high-resolution imaging and for high-resolution dispersive spectroscopy. However, it finds un- expectedly high (approx. 10%) residuals between the data and the model for effective area of the AXAF optics. Reconciling the physical model with the data, to an accuracy of a few percent, remains a goal of the analysis and interpretation of the calibration data.

ODell, S. L.↗

A self-supervised workflow for particle picking in cryo-EM

High-resolution single-particle cryo-EM data analysis relies on accurate particle picking. To facilitate the particle picking process, a self-supervised workflow has been developed. This includes an iterative strategy, which uses a 2D class average to improve training particles, and a progressively improved convolutional neural network for particle picking. To automate the selection of particles, a threshold is defined (%/Res) using the ratio of percentage class distribution and resolution as a cutoff. This workflow has been tested using six publicly available data sets with different particle sizes and shapes, and can automatically pick particles with minimal user input. The picked particles support high-resolution reconstructions at 3.0 Å or better. This workflow is a step towards automated single-particle cryo-EM data analysis at the stage of particle picking. It may be used in conjunction with commonly used single-particle analysis packages such as Relion , cryoSPARC , cisTEM , SPHIRE and EMAN2 .

2D class averages↗

The Spectral Image Processing System (SIPS) - Interactive visualization and analysis of imaging spectrometer data

The Center for the Study of Earth from Space (CSES) at the University of Colorado, Boulder, has developed a prototype interactive software system called the Spectral Image Processing System (SIPS) using IDL (the Interactive Data Language) on UNIX-based workstations. SIPS is designed to take advantage of the combination of high spectral resolution and spatial data presentation unique to imaging spectrometers. It streamlines analysis of these data by allowing scientists to rapidly interact with entire datasets. SIPS provides visualization tools for rapid exploratory analysis and numerical tools for quantitative modeling. The user interface is X-Windows-based, user friendly, and provides 'point and click' operation. SIPS is being used for multidisciplinary research concentrating on use of physically based analysis methods to enhance scientific results from imaging spectrometer data. The objective of this continuing effort is to develop operational techniques for quantitative analysis of imaging spectrometer data and to make them available to the scientific community prior to the launch of imaging spectrometer satellite systems such as the Earth Observing System (EOS) High Resolution Imaging Spectrometer (HIRIS).

Kruse, F. A.↗

Radiometric Calibration of the AWiFS Sensor and a Cross-calibration Enhanced Vicarious Calibration Technique

Using vicarious calibration validation of moderate resolution sensors such as AWiFS is complicated by requiring more land area to ensure proper registration and sufficient pixel numbers. A trial AWiFS calibration was performed on a grass site that consisted of two dramatically different grass heights. Ground truth data was collected over relatively small areas representing only a few pixels. The radiometric gain results for each of these areas will be reported. To enhance this analysis, since a near coincidence high resolution image was collected, the high resolution data was effectively resized to produce pixels comparable to AWiFS and the atmospheric model was used to produce a top of canopy radiance map. Multiple uniform vegetated areas of several radiances were then identified and subsequently propagated to the top of atmosphere viewpoint of the moderate resolution (AWiFS) satellite. The radiometric gain was then calculated based on the vendor high resolution satellite gains (for the 3 bands with comparable wavelengths). Band-to-band conversion was performed assuming a hyperspectral reflectance based on the standard vegetated site. The initial comparison produces AWiFS radiometric gain values that agree to better than 10% of the values measured using the standard vicarious gain technique.

Aaron, David↗

Evaluation of macadamia felted coccid (Hemiptera: Eriococcidae) damage and cultivar susceptibility using imagery from a small unmanned aerial vehicle ( sUAV ), combined with ground truthing

Abstract BACKGROUND Macadamia felted coccid, Acanthococcus ioronsidei (Williams) (Hemiptera: Eriococcidae), is a significant pest of macadamia nut, Macadamia integrifolia Maiden & Betche (Protaceae), in Hawaii, and heavy infestations can kill branches, resulting in characteristic dead, copper‐colored leaves. Small Unmanned Aerial Vehicles (sUAV) or ‘drones,’ combined with spatial data analysis, can provide growers with accurate and high‐resolution detection of plant stress due to pest infestations. We investigated the feasibility of using RGB (red‐green‐blue) color images from sUAV to detect dieback caused by macadamia felted coccid infestation and compared sUAV estimates with ground‐based damage estimates (ground truthing). RESULTS Spatial analysis showed clustering of foliar damage that reflected cultivar susceptibility to macadamia felted coccid infestation, with cultivars 344 and 856 being susceptible, and cultivars 800 and 333 being tolerant. sUAV and ground‐based estimates of foliar damage were similar for the cultivar 344, but ground‐based assessments were higher than sUAV for cultivar 856, possibly due to the differences in canopy architecture and significant early dieback in the lower canopy. At foliar damage levels <10%, sUAV and ground truthing data were significantly positively correlated, suggesting sUAV may be useful in detecting early stages of macadamia felted coccid infestation. CONCLUSIONS Cultivars showed varying susceptibility to macadamia felted coccid infestation and the foliage damage appeared in clusters. sUAV was able to detect the foliage damage under high and low infestation scenarios suggesting that it can be effectively used for the early detection of infestations. © 2022 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA.

60 APPLIED LIFE SCIENCES↗

Influence of Coronal Abundance Variations

The PI of this project was Jeff Scargle of NASA/Ames. Co-I's were Alma Connors of Eureka Scientific/Wellesley, and myself. Part of the work was subcontracted to Eureka Scientific via SAO, with Vinay Kashyap as PI. This project was originally assigned grant number NCC2-1206, and was later changed to NCC2-1350 for administrative reasons. The goal of the project was to obtain, derive, and develop statistical and data analysis tools that would be of use in the analyses of high-resolution, high-sensitivity data that are becoming available with new instruments. This is envisioned as a cross-disciplinary effort with a number of "collaborators" including some at SA0 (Aneta Siemiginowska, Peter Freeman) and at the Harvard Statistics department (David van Dyk, Rostislav Protassov, Xiao-li Meng, Epaminondas Sourlas, et al). We have developed a new tool to reliably measure the metallicities of thermal plasma. It is unfeasible to obtain high-resolution grating spectra for most stars, and one must make the best possible determination based on lower-resolution, CCD-type spectra. It has been noticed that most analyses of such spectra have resulted in measured metallicities that were significantly lower than when compared with analyses of high- resolution grating data where available (see, e.g., Brickhouse et al., 2000, ApJ 530,387). Such results have led to the proposal of the existence of so-called Metal Abundance Deficient, or "MAD" stars (e.g., Drake, J.J., 1996, Cool Stars 9, ASP Conf.Ser. 109, 203). We however find that much of these analyses may be systematically underestimating the metallicities, and using a newly developed method to correctly treat the low-counts regime at the high-energy tail of the stellar spectra (van Dyk et al. 2001, ApJ 548,224), have found that the metallicities of these stars are generally comparable to their photospheric values. The results were reported at the AAS (Sourlas, Yu, van Dyk, Kashyap, and Drake, 2000, BAAS 196, v32, #54.02), and at the conference on Statistical Challenges in Modem Astronomy (Sourlas, van Dyk, Kashyap, Drake, and Pease, 2003, SCMA 111, Eds. E.D.Feigelson, G.J.Babu, New York:Springer, p489-490). We also described the limitations of one of the most egregiously misused and misapplied statistical tests in astrophysical literature, the F-test for verifying model components (Protassov, van Dyk, Connors, Kashyap, and Siemiginowska, 2002, ApJ, 571,545). Indeed, a search through the ApJ archives turned up 170 papers in the 5 previous years that used the F-test explicitly in some form or the other, and with the vast majority of them not using it correctly! Indeed, looking at just 4 issues of the ApJ in 2001, we found 13 instances of its use, of which nine were demonstrably incorrect. Clearly, it is difficult to understate the importance of this issue. We also worked on speeding up Bayes Blocks and Sparse Bayes Blocks algorithms to make them more tractable for large searches. We also supported staistics students and postdocs in both explicit physics- model-based (spectra with tens of thousands of atomic lines) and "model-free" -- i.e. non-parametric or semi-parametric -- algorithms. Work on using more of the latter is just beginning; while using multi-scale methods for Poisson imaging has come to hition. In fact, "An Image Restoration Technique with Error Estimates", by D. Esch, A. Connors, M. Karovska, and D. van Dyk, was published by ApJ (Esch et a1.2004, ApJ, 610, 1213). The code has been delivered to M. Karovska for CXC; and is available for beta-testing upon request. The other large project we worked on was on the self-consistent modeling of logN-logs curves in the Poisson limit. logN-logs curves are a fundamental tool in the study of source populations, luminosity functions, and cosmological parameters. However, their determination is hampered by statistical effects such as the Eddington bias, incompleteness due to detection efficiency, faint source flux fluctuations, etc. We have develed a new and powerful method using the full Poisson machinery that allows us to model the logN-logs distribution of X-ray sources in a self-consistent manner. Because we properly account for all the above statistical effects, our modeling is valid over the full range of the data, and not just for strong sources, as is normally done. Using a Bayesian approach and modeling the fluxes with known functional forms such as simple or broken power-laws, and conditioning the expected photon counts on the fluxes, the background contamination, effective area, detector vignetting, and detection probability, we can delve deeply into the low counts regime and extend the usefulness of medium sensitivity surveys such as ChAMP by orders of magnitude. The built-in flexibility of the algorithm also allows a simultaneous analysis of multiple datasets. We have applied this analysis to a set a Chandra observations (Sourlas, Kashyap, Zezas, van Dyk, 2004, HEAD #8, #16.32)

Scargle, Jeffrey D.↗

Advanced Statistical and Data Analysis Tools for Astrophysics

The goal of the project is to obtain, derive, and develop statistical and data analysis tools that would be of use in the analyses of high-resolution, high-sensitivity data that are becoming available with new instruments. This is envisioned as a cross-disciplinary effort with a number of collaborators.

Kashyap, V.↗