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At least 109 records · Page 6

A File Archival System

ARCH, file archival system for DEC VAX, provides for easy offline storage and retrieval of arbitrary files on DEC VAX system. System designed to eliminate situations that tie up disk space and lead to confusion when different programers develop different versions of same programs and associated files.

Fanselow, J. L.↗

Design and implementation of I/O performance prediction scheme on HPC systems through large-scale log analysis

Abstract Large-scale high performance computing (HPC) systems typically consist of many thousands of CPUs and storage units used by hundreds to thousands of users simultaneously. Applications from large numbers of users have diverse characteristics, such as varying computation, communication, memory, and I/O intensity. A good understanding of the performance characteristics of each user application is important for job scheduling and resource provisioning. Among these performance characteristics, I/O performance is becoming increasingly important as data sizes rapidly increase and large-scale applications, such as simulation and model training, are widely adopted. However, predicting I/O performance is difficult because I/O systems are shared among all users and involve many layers of software and hardware stack, including the application, network interconnect, operating system, file system, and storage devices. Furthermore, updates to these layers and changes in system management policy can significantly alter the I/O behavior of applications and the entire system. To improve the prediction of the I/O performance on HPC systems, we propose integrating information from several different system logs and developing a regression-based approach to predict the I/O performance. Our proposed scheme can dynamically select the most relevant features from the log entries using various feature selection algorithms and scoring functions, and can automatically select the regression algorithm with the best accuracy for the prediction task. The evaluation results show that our proposed scheme can predict the write performance with up to 90% prediction accuracy and the read performance with up to 99% prediction accuracy using the real logs from the Cori supercomputer system at NERSC.

97 MATHEMATICS AND COMPUTING↗

Virtualizing Resources for the Application Services and Framework Team

Virtualization is an emerging technology that will undoubtedly have a major impact on the future of Information Technology. It allows for the centralization of resources in an enterprise system without the need to make any changes to the host operating system, file system, or registry. In turn, this significantly reduces cost and administration, and provides a much greater level of security, compatibility, and efficiency. This experiment examined the practicality, methodology, challenges, and benefits of implementing the technology for the Launch Control System (LCS), and more specifically the Application Services (AS) group of the National Aeronautics and Space Administration (NASA) at the Kennedy Space Center (KSC). In order to carry out this experiment, I used several tools from the virtualization company known as VMWare; these programs included VMWare ThinApp, VMWare Workstation, and VMWare ACE. Used in conjunction, these utilities provided the engine necessary to virtualize and deploy applications in a desktop environment on any Windows platform available. The results clearly show that virtualization is a viable technology that can, when implemented properly, dramatically cut costs, enhance stability and security, and provide easier management for administrators.

Varner, Justin T.↗

KNBD: A Remote Kernel Block Server for Linux

I am developing a prototype of a Linux remote disk block server whose purpose is to serve as a lower level component of a parallel file system. Parallel file systems are an important component of high performance supercomputers and clusters. Although supercomputer vendors such as SGI and IBM have their own custom solutions, there has been a void and hence a demand for such a system on Beowulf-type PC Clusters. Recently, the Parallel Virtual File System (PVFS) project at Clemson University has begun to address this need (1). Although their system provides much of the functionality of (and indeed was inspired by) the equivalent file systems in the commercial supercomputer market, their system is all in user-space. Migrating their 10 services to the kernel could provide a performance boost, by obviating the need for expensive system calls. Thanks to Pavel Machek, the Linux kernel has provided the network block device (2) with kernels 2.1.101 and later. You can configure this block device to redirect reads and writes to a remote machine's disk. This can be used as a building block for constructing a striped file system across several nodes.

Becker, Jeff↗

Application Crash Consistency and Performance with CCFS

Recent research has shown that applications often incorrectly implement crash consistency. In this paper, we present the Crash-Consistent File System (ccfs), a file system that improves the correctness of application-level crash consistency protocols while maintaining high performance. A key idea in ccfs is the abstraction of a stream. Within a stream, updates are committed in program order, improving correctness; across streams, there are no ordering restrictions, enabling scheduling flexibility and high performance. We empirically demonstrate that applications running atop ccfs achieve high levels of crash consistency. Further, we show that ccfs performance under standard file-system benchmarks is excellent, in the worst case on par with the highest performing modes of Linux ext4, and in some cases notably better. Finally, overall, we demonstrate that both application correctness and high performance can be realized in a modern file system.

97 MATHEMATICS AND COMPUTING↗

Rethinking key–value store for parallel I/O optimization

Key-value stores are being widely used as the storage system for large-scale internet services and cloud storage systems. However, they are rarely used in HPC systems, where parallel file systems are the dominant storage solution. In this study, we examine the architecture differences and performance characteristics of parallel file systems and key-value stores. We propose using key-value stores to optimize overall Input/Output (I/O) performance, especially for workloads that parallel file systems cannot handle well, such as the cases with intense data synchronization or heavy metadata operations. We conducted experiments with several synthetic benchmarks, an I/O benchmark, and a real application. We modeled the performance of these two systems using collected data from our experiments, and we provide a predictive method to identify which system offers better I/O performance given a specific workload. The results show that we can optimize the I/O performance in HPC systems by utilizing key-value stores.

Hyperdex↗

VerifyIO: Ensuring Correctness of Consistency Semantics in Parallel I/O

Abstract—High-performance computing (HPC) applications generate and consume substantial amounts of data, typically managed by parallel file systems. These applications access file systems either through the POSIX interface or by using highlevel I/O libraries. While the POSIX consistency model remains dominant in HPC, emerging file systems and popular I/O libraries increasingly adopt alternative consistency models that relax semantics in various ways, creating significant challenges for correctness and portability. This paper addresses these challenges by proposing a trace-driven I/O consistency verification workflow, implemented in our open-source tool, VerifyIO, which collects execution traces, detects data conflicts, and verifies proper synchronization against specified consistency models. Our extensive evaluation of 91 test case executions across three widely used I/O libraries with four I/O consistency models reveals critical consistency issues at both application and implementation levels.

Consistency Semantics↗

Direct-FUSE

The Direct-FUSE framework supports multiple FUSE file systems as well as other, custom user-level file systems in user space without the need to cross the user/kernel boundary into the FUSE kernel module. All layers of Direct-FUSE are in user space, and applications can directly use pre-defined unified file system calls to interact with different user-defined file systems. Our performance results show that Direct- FUSE can outperform some native FUSE file systems by 11.9% on average and does not add significant overhead over backend file systems.

SATO,, KENTO↗

ZFS on RBODs - Leveraging RAID Controllers for Metrics and Enclosure Management

Traditionally, the Lustre file system has relied on the ldiskfs file system with reliable RAID (Redundant Array of Independent Disks) storage underneath. As of Lustre 2.4, ZFS was added as a backend file system, with built-in software RAID, thereby removing the need of expensive RAID controllers. ZFS was designed to work with JBOD (Just a Bunch Of Disks) storage enclosures under the Solaris Operating System, which provided a rich device management system. Long time users of the Lustre file system have relied on the RAID controllers to provide metrics and enclosure monitoring and management services, with rich APIs and command line interfaces. This paper will study a hybrid approach using an advanced full featured RAID enclosure which is presented to the host as a JBOD, This RBOD (RAIDed Bunch Of Disks) allows ZFS to do the RAID protection and error correction, while the RAID controller handles management of the disks and monitors the enclosure. It was hoped that the value of the RAID controller features would offset the additional cost, and that performance would not suffer in this mode. The test results revealed that the hybrid RBOD approach did suffer reduced performance.

97 MATHEMATICS AND COMPUTING↗

Marsviewer

Marsviewer is a multi-platform application designed to aid in quality control, browsing, and analysis of original science product images (Experiment Data Records, or EDRs) and derived image data products (Reduced Data Records, or RDRs) returned by the Mars Explorer Rover (MER) mission. Marsviewer offers an abstraction of the products organization via a file finder. For example, the application understands the file structure and filename conventions of the MER Operational Storage Server, helping the user to navigate this complex file system to find desired images. Marsviewer also works with a flat file system, remote-operations file systems, image-archive file systems, and others. All EDRs found for a given solar day (Sol) are displayed in a list, optionally with thumbnail images. Once the user selects an image from the list, a tabbed pane conveniently displays the original source image and all associated RDRs. Marsviewer provides the option of overlaying derived images upon the source image, resulting in an easier-to-interpret color representation of the data. Display manipulations such as zoom, data range adjustment, contrast enhancement, and contour control are available. Image metadata (labels) from the current image can be displayed and searched. The architecture of the program is extensible: new types of RDRs can be installed and new file finders can be added to adapt the program to different file structures and different filename conventions. This keeps the application flexible and provides an opportunity for reuse with future rover missions.

Toole, Nicholas↗

Measurements and analytics of wide-area file transfers over dedicated connections

Distributed scientific and big-data computations are becoming increasingly dependent on access to remote files. Wide-area file transfers are supported by two basic schemes: (i) application-level tools, such as GridFTP, that provide transport services between file systems housed at geographically separated sites, and (ii) file systems mounted over wide-area networks, using mechanisms such as LNet routers that make them transparently available. In both cases, the file transfer performance critically depends on the configuration consisting of host, file, IO, and disk subsystems, which are complex by themselves, as well as on their complex compositions implemented using buffers and IO-network data transitions. We present extensive file transfer rate measurements collected over dedicated 10 Gbps connections with 0-366 ms round-trip times, using GridFTP and XDD file transfer tools, and Lustre file system extended over wide-area networks using LNet routers. Our test configurations are composed of: three types of host systems; XFS, Lustre, and ext3 file systems; and Ethernet and SONET wide-area connections. We present analytics based on the convexity-concavity of throughput profiles which provide insights into throughput and its superior or inferior trend compared to linear interpolations. We propose the utilization-concavity coefficient, a scalar metric that characterizes the overall performance of any file transfer method consisting of specific configuration and scheme. Our results enable performance optimizations by highlighting the significant roles of (i) buffer sizes and parallelism in GridFTP and XDD, and (ii) buffer utilization and credit mechanism in LNet routers.

Rao, Nageswara↗