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Results for “Directed Molecular Evolution”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 109 records · Page 6
All sourcesNASA NTRSDOE OSTI
NASA NTRS2000

Molecular and Higher Precision Isotopic Measurements of the Mars Atmosphere and Subsurface Volatiles

In response to the question 'what to do next' at Mars we explore the value of a high precision in situ measurement of isotopic and trace gas constituents in the atmosphere combined with a similar analysis of gas extracted from near surface rocks and soils. The scientific goals are to advance our understanding of the evolution of the Martian atmosphere and to search for fossils of past geochemical conditions. One element of this program that ties directly to the goals of the Astrobiology Program will be a sensitive search for simple or complex organic molecules contained in the atmosphere and in the solid phase. The broad chemical and isotopic analysis planned insures that a highly successful program will be carried out even if no organics are detected. We will demonstrate that the technology to carry out this Program is presently in hand.

Mahaffy, P. R.↗
DOE OSTI2024

Effects of processing temperature, pressure, and fiber volume fraction on mechanical and morphological behaviors of fully-recyclable uni-directional thermoplastic polymer-fiber-reinforced polymers

This work explores a type of composite called thermoplastic polymer-fiber-reinforced polymers (PFRPs), often referred to as self-reinforced composites (SRCs). A representative PFRP was exemplified using unidirectional (UD) ultra-high-molecular-weight polyethylene (UHMWPE) fibers embedded in a high-density polyethylene (HDPE) matrix. The effects of compression molding temperature and pressure on the mechanical and morphological behaviors of the filament-wound PFRPs with various fiber volume fractions (V f ) were experimentally investigated. The results elucidate the evolution of morphologies and tensile properties of the PFRPs due to thermal melting, fiber misalignment from pressure, and (V f )-induced structural variance, which has not been comprehensively reported yet. The highest specific tensile strength and modulus of the PFRP laminae reach 600 MPa/(g/cm 3 ) and 31 GPa/(g/cm 3 ), respectively. These properties are comparable to glass-/aramid-fiber-reinforced polymers (GFRPs, GFRTPs, AFRPs, and AFRTPs), with PFRPs exhibiting better ductility (specific strain at peak load ≈ 4%/(g/cm 3 )) than other common polymer composites. The motivation for this work was the high recyclability of PFRPs, which can be recycled by melting both the fibers and the matrix, and then reshaped them for re-manufacturing composites to maximize the efficiency in material reuse. This process simplifies the implementation of closed-loop recycling, re-manufacturing, and reuse to support sustainability in composites. This work aims to contribute to advancing thermoplastic PFRPs for their potential applications in various industries.

36 MATERIALS SCIENCE↗
NASA NTRS1992

The standard model and some new directions

A 'standard' model of Active Galactic Nuclei (AGN), based upon a massive black hole surrounded by a thin accretion disk, is defined. It is argued that, although there is good evidence for the presence of black holes and orbiting gas, most of the details of this model are either inadequate or controversial. Magnetic field may be responsible for the confinement of continuum and line-emitting gas, for the dynamical evolution of accretion disks and for the formation of jets. It is further argued that gaseous fuel is supplied in molecular form and that this is responsible for thermal re-radiation, equatorial obscuration and, perhaps, the broad line gas clouds. Stars may also supply gas close to the black hole, especially in low power AGN and they may be observable in discrete orbits as probes of the gravitational field. Recent observations suggest that magnetic field, stars, dusty molecular gas and orientation effects must be essential components of a complete description of AGN. The discovery of quasars with redshifts approaching 5 is an important clue to the mechanism of galaxy formation.

Blandford, R. D.↗
DOE OSTI2026

Single-shot ultrafast dynamics of nanosecond pulsed plasmas: Transition from ps–ns nonequilibrium to near-full ionization

The ultrafast multi-stage evolution of state-defining properties in atmospheric-pressure nanosecond pulsed plasmas is quantified using single-discharge, jitter-free, continuous streak-sweep spectroscopy of N 2 (C → B) molecular and N + /O + ionic species with a single-shot time resolution as short as ∼160 ps. An early period of extreme nonequilibrium is observed with vibrational temperatures [T V (C)] dropping from ∼8000 K at <200 ps after plasma breakdown to <4000 K within ∼1 ns, with near-ambient rotational temperatures [T R (C)] ∼ 300 K due to limited collisional energy transfer. This early-time T V (C) trend is representative of a direct and unquenched look into the high-energy tail of the electron energy distribution function; thus, it tracks real-time changes in the mean electron energy via the N2(C) emission signatures. This is followed by the rapid onset of N + /O + ionic emission after a distinct time delay of ∼14.9 ns due to multistep chemical kinetics. The ionic emission enables determination of electron densities (n e ) >2 × 10 19 cm −3 and electron temperatures (T e ) >36 000 K, indicating the transition to a nearly fully ionized regime. The ps–ns temporal dynamics are also compared between air and N 2 plasmas to assess the influence of collisional partners, as well as across the anode, cathode, and central gap regions to identify spatial variations in plasma behavior. Finally, this work demonstrates versatile continuously probing approach capable of spectro-temporal and spatially resolved single-shot measurements of key state variables in the ps–ns evolution of atmospheric-pressure nanosecond pulsed plasmas.

Electric discharges↗
NASA NTRS2024

Analysis of Ryugu Fluid Inclusions: An Update

The most direct and convincing evidence for the presence of water and organic molecules on protoplanetary bodies is provided by fluid inclusions trapped in secondary minerals. Our previous work has demonstrated that early solar system fluids have survived as fluid inclusions in a Ryugu pyrrhotite crystal [2]. We hypothesize that the bulk molecular and isotopic composition of individual Ryugu fluid inclusions can be measured to provide ground truth for exploring and thermochemical modeling of the compositional and isotopic evolution of fluids in protoplanetary bodies including asteroids, comets and icy moons. This presentation is an update on our efforts to make measurements of elemental, molecular and, in particular, isotopic compositions of individual aqueous fluid inclusions in Ryugu samples. The measurements we plan will permit us to (1) understand elemental composition of the aqueous fluids present on Ryugu’s progenitor body, (2) track changes in the chemical and stable isotopic composition of altering fluids in small bodies over time, (3) verify the presence of organics in Ryugu fluids, (4) verify the reported significant CO 2 in Ryugu fluids, (5) measure O and H isotopes in preserved Ryugu fluids, (6) provide constraints on temperature range calculations for the mineralizing reactions being performed by other groups using mineral pairs, (7) measure sulfur/chloride and chloride/phosphorus ratios of Ryugu fluids. We note here that recent results from Enceladus reveal the importance of phosphorus in small body aqueous brines, indicating that our proposed research will benefit studies of all current ocean worlds.

Andrei Dolocan↗
DOE OSTI2025

Statistical evaluation of microscale stress conditions leading to void nucleation in the weak shock regime

Here, we investigate the heterogeneity of the stress state driven by anisotropic deformation response at the single crystal level through five statistical volume element (SVE) calculations of polycrystalline BCC tantalum. This work focuses on grain boundaries as a prominent material defect type prone to void nucleation based upon experimental observations of predominantly intergranular void nucleation in this material. The SVEs are constructed to be statistically representative of larger volumes of material and are meshed such that mean and standard deviation of grain size and orientation information is reconstructed. The computational meshes feature hexahedral (brick) elements and smooth conformal grain boundaries where significant stress concentration is known to occur, a tail effect of interest in the extreme events process of dynamic ductile damage. An existing micromechanical crystallographic plasticity model shown to capture the single crystal behavior of BCC tantalum well is used to perform the polycrystal calculations. The model includes representation of the non-Schmid effect of non-planar screw dislocation kinetics in tantalum. A three-dimensional stress state time profile predicted by damage modeling of a flyer plate impact experiment is applied as boundary conditions to each SVE. Resulting grain boundary stress state statistics are strongly non-Gaussian. Significant structural evolution is observed within the compressive hold before unloading into tension in the stress profile. Strong angular dependence of grain boundary traction magnitude with shock direction is observed. Non-Schmid effects continue to suggest their influence on propensity of microstructural defect types to nucleate voids. A general void nucleation criterion is proposed using probability theory. The general framework is specified to polycrystalline BCC tantalum in the weak shock regime to include the SVE calculations and literature molecular dynamics calculations of grain boundary void nucleation strength. Probability density functions (PDFs) are used to describe the interaction between the local stress state heterogeneity and the distributed grain boundary void nucleation strength state. A causation entropy maximization procedure removes the requirement for ad hoc selection of a PDF functional form and provides a rigorous procedure for data-based PDF determination. The resulting physically informed PDF describes the spatial appearance frequency of nucleated voids as a function of applied macroscale pressure. Lower length scale physics are thus packaged in a precise and computationally efficient way to provide computational plasticity insight to macroscale dynamic ductile damage models.

36 MATERIALS SCIENCE↗
NASA NTRS1995

Galileo NIMS Direct Observations of the SL-9 Fireballs

The Galileo spacecraft was situated 1.8 AU from Jupiter, at a phase angle of 51 deg, providing a direct view of the impacts of the comet fragments with the planet. Low resolution infrared spectra in the 1 to 5 micron range were recorded for several of the events, which can be used to study the early evolution of the fireballs. Preliminary analysis of the data received for the G event show an initial fireball temperature of greater than 5000 K and an effective source diameter of less than 10 km. These spectra show absorption by molecular hydrogen and methane which place the upper emitting surface in the stratosphere, above the ammonia cloud level. As time progresses, the fireball cools and the effective diameter of the radiating area increases at roughly 2 km/sec. In 30 seconds, the fireball cools to approximately 1000 k and exhibits a diameter of about 100 km.

NIMS↗
NASA NTRS1995

Insights to primitive replication derived from structures of small oligonucleotides

Available information on the structure of small oligonucleotides is surveyed. It is observed that even small oligomers typically exhibit defined structures over a wide range of pH and temperature. These structures rely on a plethora of non-standard base-base interactions in addition to the traditional Watson-Crick pairings. Stable duplexes, though typically antiparallel, can be parallel or staggered and perfect complementarity is not essential. These results imply that primitive template directed reactions do not require high fidelity. Hence, the extensive use of Watson-Crick complementarity in genes rather than being a direct consequence of the primitive condensation process, may instead reflect subsequent selection based on the advantage of accuracy in maintaining the primitive genetic machinery once it arose.

Review↗
NASA NTRS2001

Spectroscopic diagnostics of organic chemistry in the protostellar environment

A combination of astronomical observations, laboratory studies, and theoretical modelling is necessary to determine the organic chemistry of dense molecular clouds. We present spectroscopic evidence for the composition and evolution of organic molecules in protostellar environments. The principal reaction pathways to complex molecule formation by catalysis on dust grains and by reactions in the interstellar gas are described. Protostellar cores, where warming of dust has induced evaporation of icy grain mantles, are excellent sites in which to study the interaction between gas phase and grain-surface chemistries. We investigate the link between organics that are observed as direct products of grain surface reactions and those which are formed by secondary gas phase reactions of evaporated surface products. Theory predicts observable correlations between specific interstellar molecules, and also which new organics are viable for detection. We discuss recent infrared observations obtained with the Infrared Space Observatory, laboratory studies of organic molecules, theories of molecule formation, and summarise recent radioastronomical searches for various complex molecules such as ethers, azaheterocyclic compounds, and amino acids.

Ethers/analysis/chemical synthesis/chemistry↗
NASA NTRS1994

The sequence, and its evolutionary implications, of a Thermococcus celer protein associated with transcription

Through random search, a gene from Thermococcus celer has been identified and sequenced that appears to encode a transcription-associated protein (110 amino acid residues). The sequence has clear homology to approximately the last half of an open reading frame reported previously for Sulfolobus acidocaldarius [Langer, D. & Zillig, W. (1993) Nucleic Acids Res. 21, 2251]. The protein translations of these two archaeal genes in turn are homologs of a small subunit found in eukaryotic RNA polymerase I (A12.2) and the counterpart of this from RNA polymerase II (B12.6). Homology is also seen with the eukaryotic transcription factor TFIIS, but it involves only the terminal 45 amino acids of the archaeal proteins. Evolutionary implications of these homologies are discussed.

Non-NASA Center↗
DOE OSTI2024

Photocatalytic Semi‐Hydrogenation of Acetylene to Polymer‐Grade Ethylene with Molecular and Metal–Organic Framework Cobaloximes

Abstract The semi‐hydrogenation of acetylene in ethylene‐rich gas streams is a high‐priority industrial chemical reaction for producing polymer‐grade ethylene. Traditional thermocatalytic routes for acetylene reduction to ethylene, despite progress, still require high temperatures and high H 2 consumption, possess relatively low selectivity, and use a noble metal catalyst. Light‐powered strategies are starting to emerge, given that they have the potential to use directly the abundant and sustainable solar irradiation, but are ineffective. Here an efficient, >99.9% selective, visible‐light powered, catalytic conversion of acetylene to ethylene is reported. The catalyst is a homogeneous molecular cobaloxime that operates in tandem with a photosensitizer at room temperature and bypasses the use of non‐environmentally friendly and flammable H 2 gas feed. The reaction proceeds through a cobalt‐hydride intermediate with ≈100% conversion of acetylene under competitive (ethylene co‐feed) conditions after only 50 min, and with no evolution of H 2 or over‐hydrogenation to ethane. The cobaloxime is further incorporated as a linker in a metal–organic framework; the result is a heterogeneous catalyst for the conversion of acetylene under competitive (ethylene co‐feed) conditions that can be recycled up to six times and remains catalytically active for 48 h, before significant loss of performance is observed.

Stone, Aaron E. B. S.↗
DOE OSTI2026

Learning Latent Representations to Bridge Coarse-Grained and Atomistic Resolutions in Polymer Simulations

We present a machine-learning-based framework for learning reduced-order representations of polymer chain conformations across coarse-grained (CG) and united-atom (UA) fidelities. By employing linear singular value decomposition and nonlinear autoencoders, we compress high-dimensional polymer configurations into latent spaces with minimal loss of structural accuracy. Crucially, we demonstrate a near-perfect linear mapping between CG and UA latent spaces, enabling an efficient super-resolution back-mapping procedure that reconstructs high-fidelity UA configurations from CG simulations. While minor structural inaccuracies occur, they are effectively corrected through a brief molecular dynamics relaxation, forming a practical hybrid machine learning−physics scheme. This approach establishes the key structural prerequisites for accelerated polymer dynamics simulations: a compact and accurate latent encoding of polymer chain conformations and a validated multi-fidelity mapping that permits reconstruction of UA structures from CG configurations. The extension of this framework to explicit time evolution within the latent space, enabling dynamics to be propagated at CG fidelity and decoded to UA resolution only when required, represents a natural and well-motivated direction for future work.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
NASA NTRS1989

Dissociative recombination in interstellar clouds

Molecular ions play a significant role in the chemistry and evolution of interstellar molecular clouds, even though these regions are overwhelmingly neutral. The dissociative recombination (DR) process governs the abundances of many of these ions and of related neutral species. The gas-phase ion-molecule chemistry of the simplest species is summarized, with emphasis on those problems which are most sensitive to uncertain rates or product branching ratios of DR processes. Examples of the kinds of information needed about DR processes are presented. The importance of the H3(+) ion and prospects for its direct observation are discussed.

Black, John H.↗
NASA NTRS1999

Nonenzymatic oligomerization reactions on templates containing inosinic acid or diaminopurine nucleotide residues

The template-directed oligomerization of nucleoside-5'-phosphoro-2-methyl imidazolides on standard oligonucleotide templates has been studied extensively. Here, we describe experiments with templates in which inosinic acid (I) is substituted for guanylic acid, or 2,6-diaminopurine nucleotide (D) for adenylic acid. We find that the substitution of I for G in a template is strongly inhibitory and prevents any incorporation of C into internal positions in the oligomeric products of the reaction. The substitution of D for A, on the contrary, leads to increased incorporation of U into the products. We found no evidence for the template-directed facilitation of oligomerization of A or I through A-I base pairing. The significance of these results for prebiotic chemistry is discussed.

NASA Discipline Exobiology↗
NASA NTRS1995

Collapse and fragmentation of molecular cloud cores. 2: Collapse induced by stellar shock waves

The standard scenario for low-mass star formation involves 'inside-out' collapse of a dense molecular cloud core following loss of magnetic field support through ambipolar diffusion. However, isotopic anomalies in presolar grains and meteoritical inclusions imply that the collapse of the presolar cloud may have been triggered by a stellar shock wave. This paper explores 'outside-in' collapse, that is, protostellar collapse initiated directly by the compression of quiescent dense cloud cores impacted by relatively slow stellar shock waves. A second-order accurate, gravitational hydrodynamics code has been used to study both the spherically symmetrical and three-dimensional evolution of initially centrally condensed, isothermal, self-gravitating, solar-mass cloud cores that are struck by stellar shock waves with velocities up to 25 km/s and postshock temperatures of 10 to 10,000 K. The models show that such mild shock waves do not completely shred and destroy the cloud, and that the dynamical ram pressure can compress the cloud to the verge of self-gravitational collapse. However, compression caused by a high postshock temperature is a considerably more effective means of inducing collapse. Shock-induced collapse produces high initial mass accretion rates (greater than 10(exp -4) solar mass/yr in a solar-mass cloud) that decline rapidly to much lower values, depending on the presence (approximately 10(exp -6) solar mass/yr) or absence (approximately 10(exp -8) to 10(exp -7) solar mass/yr) of an infinite reservoir of mass. Stellar mass accretion rates approximately 10(exp -7) solar mass/yr have been previously inferred from the luminosities of T Tauri stars; balanced mass accretion (stellar rate = envelope rate) at approximately 10(exp -7) solar mass/yr could then be possible if accretion occurs from a finite mass reservoir. Fluid tracers are used to determine what fraction of the stellar shock material is incorporated into the resulting protostellar object and disk; roughly half the impinging material is injected into the collapsing cloud core when there is a high postshock temperature. The models are consistent with a scenario where an AGB star wind triggered the collapse of the presolar cloud while injecting about 0.01 solar mass of matter derived from the AGB star envelope, as has been separately inferred on the basis of nucleosynthesis calculations.

Boss, Alan P.↗
DOE OSTI2025

RNAi and genome editing of sugarcane: Progress and prospects

SUMMARY Sugarcane, which provides 80% of global table sugar and 40% of biofuel, presents unique breeding challenges due to its highly polyploid, heterozygous, and frequently aneuploid genome. Significant progress has been made in developing genetic resources, including the recently completed reference genome of the sugarcane cultivar R570 and pan‐genomic resources from sorghum, a closely related diploid species. Biotechnological approaches including RNA interference (RNAi), overexpression of transgenes, and gene editing technologies offer promising avenues for accelerating sugarcane improvement. These methods have successfully targeted genes involved in important traits such as sucrose accumulation, lignin biosynthesis, biomass oil accumulation, and stress response. One of the main transformation methods—biolistic gene transfer or Agrobacterium ‐mediated transformation—coupled with efficient tissue culture protocols, is typically used for implementing these biotechnology approaches. Emerging technologies show promise for overcoming current limitations. The use of morphogenic genes can help address genotype constraints and improve transformation efficiency. Tissue culture‐free technologies, such as spray‐induced gene silencing, virus‐induced gene silencing, or virus‐induced gene editing, offer potential for accelerating functional genomics studies. Additionally, novel approaches including base and prime editing, orthogonal synthetic transcription factors, and synthetic directed evolution present opportunities for enhancing sugarcane traits. These advances collectively aim to improve sugarcane's efficiency as a crop for both sugar and biofuel production. This review aims to discuss the progress made in sugarcane methodologies, with a focus on RNAi and gene editing approaches, how RNAi can be used to inform functional gene targets, and future improvements and applications.

Brant, Eleanor [Agronomy Department, Plant Molecul↗
NASA NTRS2001

The sugar model: catalysis by amines and amino acid products

Ammonia and amines (including amino acids) were shown to catalyze the formation of sugars from formaldehyde and glycolaldehyde, and the subsequent conversion of sugars to carbonylcontaining products under the conditions studied (pH 5.5 and 50 degrees C). Sterically unhindered primary amines were better catalysts than ammonia, secondary amines, and sterically hindered primary amines (i.e. alpha-aminoisobutyric acid). Reactions catalyzed by primary amines initially consumed formaldehyde and glycolaldehyde about 15-20 times faster than an uncatalyzed control reaction. The amine-catalyzed reactions yielded aldotriose (glyceraldehyde), ketotriose (dihydroxyacetone), aldotetroses (erythrose and threose), ketotetrose (erythrulose), pyruvaldehyde, acetaldehyde, glyoxal, pyruvate, glyoxylate, and several unindentified carbonyl products. The concentrations of the carbonyl products, except pyruvate and ketotetrose, initially increased and then declined during the reaction, indicating their ultimate conversion to other products (like larger sugars or pyruvate). The uncatalyzed control reaction yielded no pyruvate or glyoxylate, and only trace amounts of pyruvaldehyde, acetaldehyde and glyoxal. In the presence of 15 mM catalytic primary amine, such as alanine, the rates of triose and pyruvaldehyde of synthesis were about 15-times and 1200-times faster, respectively, than the uncatalyzed reaction. Since previous studies established that alanine is synthesized from glycolaldehyde and formaldehyde via pyruvaldehyde as its direct precursor, the demonstration that the alanine catalyzes the conversion of glycolaldehyde and formaldehyde to pyruvaldehyde indicates that this synthetic pathway is capable of autocatalysis. The relevance of this synthetic process, named the Sugar Model, to the origin of life is discussed.

Acetaldehyde/analogs & derivatives/chemistry↗
NASA NTRS2007

Origin and Evolution of Nitrogen on Titan, Enceladus, Triton, and Pluto

Nitrogen, together with carbon, hydrogen, oxygen, phosphorus and sulfur (CHNOPS), plays a central role in life as we know it. Indeed, molecular nitrogen is the most abundant component of the terrestrial atmosphere, and second only to carbon dioxide on Mars and Venus. The Voyager and Cassini-Huygens observations show that copious nitrogen is present on Titan also, comprising some 95% by volume of this moon's 1500 millibar atmosphere. After water vapor, it may be the most abundant (4%) of the gases around tiny Enceladus, as revealed by the recent Cassini observations. A thin nitrogen atmosphere is found even on the coldest of the solar system bodies, Triton and Pluto. The available evidence on nitrogen isotopes and the heavy noble gases suggests that Titan acquired its nitrogen largely in the form of ammonia. Subsequent chemical evolution, beginning with the photolysis of NH3 on primordial Titan, led to the nitrogen atmosphere we see on Titan today. This is also the scenario for the origin of nitrogen on the terrestrial planets. Contrary to Titan, the colder outer solar system objects, Triton and Pluto, neither had the luxury of receiving much arnmonia in the first place, nor of photolyzing whatever little ammonia they did receive in the planetesimals that formed them. On the other hand, it is plausible the planetesimals were capable of trapping and delivering molecular nitrogen directly to Triton and Pluto, unlike Titan. The origin of nitrogen on Enceladus is somewhat enigmatic. A scenario similar to Titan's, but with a role for the interior processes, may be at work. In this paper, we will discuss the source and loss of nitrogen for the above objects, and why Ganymede, the largest moon in the solar system, is nitrogen starved.

Atreya, S. K.↗